DK949582 |
Clone id |
TST38A01NGRL0006_F23 |
Library |
TST38 |
Length |
667 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_F23. 5' end sequence. |
Accession |
DK949582 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL98Contig1 |
Sequence |
CCAGTGCAGTGGAGAGCAGATCTGTGTGCTCAAGCAGCCATGGCGGAGCAGACGGAACGC GCTTTCCTTAAGCAGCCGAAGGTCTTTCTCTGCGGCAAAACTTCTGGAAAAGGAAGGGCT CCTGGCAAGCGAGGAAATCGATTCTATAAGAACATTGGTTTGGGGTTTAAGACACCAAGA GAAGCTATTGAAGGTACATACATTGACAAGAAGTGCCCTTTTACGGGCAACGTTTCTATC CGAGGGCGCATTTTGACTGGGACTGTTAACTGCGCAAAAATGACGAGGACAATAACTGTC AGGAGGGACTACTTGCATTTCGTGAAGAAATATCAAAGGTATGAGAAGAGGCATTCGAAT TTGTCTGCCCACGTGTCTCCTTGCTTCCGTGTGAAAGAGGGGGACAAGGTTATTATCGGG CAGTGCCGGCCTCTTTCAAAGACTGTAAGATTCAACGTCTTGAAGGTCTTTCCTATGGGA GCCGCAGAGGGTGGCAAGAAGGCATTCACTGCAATGTAGTGTACCGTAGTTTTCCATCGA ACCTAATTTTTGTCTAAATTTCATGGGTACCTTGGACTCTTGTGCGAAGGTCACTATTTT GTGAAGCTAATGTTCACTGTCGCTTCCAAGAGCTGAGTTTTTTCAACGCAACATTTTTAC ATGTTTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O65569 |
Definition |
sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis thaliana |
Align length |
159 |
Score (bit) |
271.0 |
E-value |
2.0e-72 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S6F7 |
Definition |
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
160 |
Score (bit) |
281.0 |
E-value |
3.0e-74 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949582|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_F23, 5' (667 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 281 3e-74 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 281 3e-74 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 279 1e-73 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 275 1e-72 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 275 1e-72 tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 275 2e-72 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 274 4e-72 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 273 7e-72 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 273 7e-72 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 271 4e-71 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 268 2e-70 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 268 2e-70 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 268 2e-70 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 268 2e-70 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 266 9e-70 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 265 2e-69 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 265 3e-69 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 262 2e-68 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 261 2e-68 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 261 2e-68 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 261 3e-68 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 261 4e-68 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 261 4e-68 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 260 6e-68 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 255 2e-66 tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 233 6e-60 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 233 1e-59 tr|Q209Q5|Q209Q5_9CHLO 40S ribosomal protein S11 OS=Chlamydomona... 226 1e-57 tr|A3BQN0|A3BQN0_ORYSJ Putative uncharacterized protein OS=Oryza... 225 2e-57 tr|Q7SFZ2|Q7SFZ2_NEUCR Putative uncharacterized protein OS=Neuro... 215 2e-54
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 281 bits (719), Expect = 3e-74 Identities = 136/160 (85%), Positives = 148/160 (92%), Gaps = 1/160 (0%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTE++FLKQPKVFL K S KG+A GK G RF+KN+GLGFKTPREAIEGTYIDKKCP Sbjct: 1 MAEQTEKSFLKQPKVFLSTKASSKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTG+VSIRGRILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKE Sbjct: 61 FTGDVSIRGRILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 516 GDKVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 121 GDKVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 281 bits (719), Expect = 3e-74 Identities = 136/160 (85%), Positives = 148/160 (92%), Gaps = 1/160 (0%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTE++FLKQPKVFL K S KG+A GK G RF+KN+GLGFKTPREAIEGTYIDKKCP Sbjct: 1 MAEQTEKSFLKQPKVFLSTKASAKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTG+VSIRGRILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKE Sbjct: 61 FTGDVSIRGRILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 516 GDKVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 121 GDKVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 279 bits (713), Expect = 1e-73 Identities = 133/159 (83%), Positives = 144/159 (90%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTERAFLKQPKVFLC K SGKG+ PGK GNRF+KNIGLGFKTPREAIEGTYIDKKCP Sbjct: 1 MAEQTERAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTGNVSIRGRIL GT + AKM RTI VRR+YLH+V+KYQRYEKRHSN++AH+SPCFRVKE Sbjct: 61 FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVRKYQRYEKRHSNIAAHISPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 516 GD VIIGQCRPLSKTVRFNVLKV P G+ GGKKAF A+ Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKGGGKKAFAAV 159
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 275 bits (704), Expect = 1e-72 Identities = 132/158 (83%), Positives = 141/158 (89%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTERAFLKQPKVFLC K SGKG+ PGK GNRF+KNIGLGFKTPREAIEGTYIDKKCP Sbjct: 1 MAEQTERAFLKQPKVFLCPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTG VSIRGRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKE Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 513 GD VIIGQCRPLSKTVRFNV+KV P G+ GGKKAF A Sbjct: 121 GDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIA 158
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 275 bits (704), Expect = 1e-72 Identities = 132/160 (82%), Positives = 144/160 (90%), Gaps = 1/160 (0%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTE+AFLKQPKVFLC K SGKG+ PGK GNRF+K++GLGFKTPREAI+GTYIDKKCP Sbjct: 1 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTGNVSIRGRIL GT + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKE Sbjct: 61 FTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 GD VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 275 bits (702), Expect = 2e-72 Identities = 131/159 (82%), Positives = 142/159 (89%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTE+AFLKQPKVFL SGKG+ PGK GNRF+KNIGLGFKTPR+AIEGTYIDKKCP Sbjct: 1 MAEQTEKAFLKQPKVFLSSNKSGKGKRPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTGNVSIRGRIL GT + AKM RTI VRR+YLH++KKYQRYEKRHSN+ AHVSPCFRVKE Sbjct: 61 FTGNVSIRGRILAGTCHSAKMQRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 516 GD VIIGQCRP+SKTVRFNVLKV P GAA GGKKAFT + Sbjct: 121 GDHVIIGQCRPISKTVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 274 bits (700), Expect = 4e-72 Identities = 132/160 (82%), Positives = 143/160 (89%), Gaps = 1/160 (0%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTE+AFLKQPKVFLC K SGKG+ PGK GNRF+K++GLGFKTPREA EGTYIDKKCP Sbjct: 1 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTGNVSIRGRIL GT + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKE Sbjct: 61 FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 GD VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 163
Score = 273 bits (698), Expect = 7e-72 Identities = 132/160 (82%), Positives = 144/160 (90%), Gaps = 1/160 (0%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTERAFLKQPKVFLC K SGKG+ PGK GNRF+K+IGLGFKTPREAIEG Y+DKKCP Sbjct: 1 MAEQTERAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGAYVDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTGNVSIRGRIL GT + AKM RTI VRR+YLH+VKKYQRYEKRHSN++AH+SPCFRVKE Sbjct: 61 FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIAAHISPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 GD VIIGQCRPLSKTVRFNVLKV P G+ G GKKAFTA+ Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKGGSGKKAFTAI 160
>tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 160
Score = 273 bits (698), Expect = 7e-72 Identities = 132/160 (82%), Positives = 143/160 (89%), Gaps = 1/160 (0%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTERAFLKQPKVFL K SGKG+ PGK GNRF+KN+GLGFKTP+EA++GTYIDKKCP Sbjct: 1 MAEQTERAFLKQPKVFLSSKKSGKGKRPGKGGNRFFKNVGLGFKTPKEAVQGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTGNVSIRGRIL GT AKMTRTI VRRDYLHFVKKYQRYEKRHSN+ AH+SPCFRVKE Sbjct: 61 FTGNVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 GD VIIGQCRPLSKTVRFNVLKV P G++ G KKAFTA+ Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGSAKKAFTAI 160
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 271 bits (692), Expect = 4e-71 Identities = 130/158 (82%), Positives = 141/158 (89%) Frame = +1
Query: 40 MAEQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCP 219 MAEQTE+AFLKQPKVFL K SGKG+ PGK GNRF+K+IGLGFKTPREAIEGTYIDKKCP Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 220 FTGNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKE 399 FTG VSIRGRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKE Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
Query: 400 GDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 513 GD VIIGQCRPLSKTVRFNV+KV P G+A GKKAFTA Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
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