DK949609
Clone id TST38A01NGRL0006_H04
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_H04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CACGCCTTTTACATCACAAAGTCTGCTCTCTCTCTCTCTCTCTCTCAGACCAACACACAC
ACACACACACAGTACACACACGCGCATGCACTCCCAAAATTTCGACACAGTAATCACTCC
AACCTCATCGATCCATTCTGCTAATCACACAAAATCGCCCATAATTGGTCGGGCTAATTT
CAGCCACAATTCGCCTGCAAAATAACCTCCCGTTCCTTAATTTCACCCGAATTACCCATT
ATCTGTAGCTGATCAGCACACTTTTAGATTTTCCAATCATATTGTACCTATCATAATTAG
CATTAAGGGCCCTTAATACATGGATCCCTTCACTCAGCTTCAATTCTCTGCATTTGGTCG
AGGCGCGGTCGAGGCGCGCTGCAATGGCAGCTGCTGACCAGCTTTGAGCTCCCATTCTCT
GCTCATGAGCATAATATAGAAGCTCGGCAGCTCGTCCAACAAATGTGGCTTGCGTGGAGA
AGACGAGACATGAACAAATTATTTGCAGGGCCGCCACACCCTCATCAGAAAATGATGATC
AGCCAGGGACGATGCGAATTTTCTTGTGGAGATAATGTCGCTTAATGCAGCTGCTGCCTC
TGGCATCACTAGGGTACATATTACATATTTCTTATATTGTCTTCACTCAACTTGAATTAC
AAAAAGGATTAATTAATACCACTGCTA
■■Homology search results ■■ -
sp_hit_id Q9BG98
Definition sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus cuniculus
Align length 57
Score (bit) 31.2
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949609|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_H04, 5'
(687 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subuni... 31 5.4

>sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit
alpha-1 OS=Oryctolagus cuniculus GN=KCNMA1 PE=2 SV=1
Length = 1179

Score = 31.2 bits (69), Expect = 5.4
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = -2

Query: 521 GCGGPANNLFMSRLLHASHICWTSCRASILCS*AENGSSKLVSSCHCSAPRPRLDQM 351
G GG + L MS +HASH+ S AS S + + SS SS S P++D +
Sbjct: 17 GGGGGGSGLRMSSNIHASHL---SLDASSSSSSSSSSSSSSSSSSSSSVHEPKMDAL 70


tr_hit_id Q4S1E9
Definition tr|Q4S1E9|Q4S1E9_TETNG Chromosome 13 SCAF14769, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 66
Score (bit) 34.3
E-value 7.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK949609|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_H04, 5'
(687 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4S1E9|Q4S1E9_TETNG Chromosome 13 SCAF14769, whole genome sho... 34 7.7
tr|Q4FR26|Q4FR26_PSYA2 Putative sugar efflux transporter, Major ... 34 10.0
tr|Q1Q9B7|Q1Q9B7_PSYCK Major facilitator superfamily MFS_1 OS=Ps... 34 10.0

>tr|Q4S1E9|Q4S1E9_TETNG Chromosome 13 SCAF14769, whole genome
shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00025587001 PE=4 SV=1
Length = 522

Score = 34.3 bits (77), Expect = 7.7
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = -3

Query: 226 VKLRNGRLFCRRIVAEISPTNYGRFCVISRMDR*GWSDYCVEILGVHARVCTVCVCVCWS 47
+K+ + R F I AEI+ Y C S R ++ Y + +VCVCVC
Sbjct: 253 LKMNSIRSFIEAIRAEIA--QYWEKCFYSPEQRKAFAPYHTG----ESSATSVCVCVCVC 306

Query: 46 ERERER 29
ERERER
Sbjct: 307 ERERER 312


>tr|Q4FR26|Q4FR26_PSYA2 Putative sugar efflux transporter, Major
facilitator superfamily (MFS) OS=Psychrobacter arcticus
(strain DSM 17307 / 273-4) GN=Psyc_1684 PE=4 SV=1
Length = 454

Score = 33.9 bits (76), Expect = 10.0
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1

Query: 307 GPLIHGSLHSASILCIWSRRGRGALQWQLLTSFELPFSAHEHNIEARQLVQQMWLAWRRR 486
GPL+ GSL + + W G L LL P +HN++ + + QQ+ +
Sbjct: 150 GPLLVGSLGISGLF--WLTAGFAVLAMLLLLFVPTPLRVLKHNLDNKSIGQQLATVLKIG 207

Query: 487 DMNKLFAG 510
D+N+L G
Sbjct: 208 DLNRLHIG 215


>tr|Q1Q9B7|Q1Q9B7_PSYCK Major facilitator superfamily MFS_1
OS=Psychrobacter cryohalolentis (strain K5)
GN=Pcryo_1959 PE=4 SV=1
Length = 454

Score = 33.9 bits (76), Expect = 10.0
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1

Query: 307 GPLIHGSLHSASILCIWSRRGRGALQWQLLTSFELPFSAHEHNIEARQLVQQMWLAWRRR 486
GPL+ GSL + + W G L LL P +HN++ + + QQ+ +
Sbjct: 150 GPLLVGSLGISGLF--WLTAGFAVLAMLLLLFVPTPLRVLKHNLDNKSIGQQLATVLKIG 207

Query: 487 DMNKLFAG 510
D+N+L G
Sbjct: 208 DLNRLHIG 215