DK949611 |
Clone id |
TST38A01NGRL0006_H06 |
Library |
TST38 |
Length |
710 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_H06. 5' end sequence. |
Accession |
DK949611 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1620Contig1 |
Sequence |
GAGATCAGTAGGGTTTAGCTCCGCGATGAGGACTGCAGCTCTGCTCCGCCCTGTCTCAAG GCTTCTTCACCGCGTTGCTGCTACAGAAAGTTTATCTAGAGAGAGCTTTGCAGAAGTAGC AGGGAGGGCTGCAGCGATCTATGGAAGGCAAGAGAGCAGAGTAGCGATGCAACTGGGAGG TTTGCGCGCTCTTCGGCGAGAGCCCATCTCTCAGGCGCAGGTGCAAGCAGAGATGGAAGA AGAGGCAAAGAACATAGACCTTGCCCCGCACAAGCTCTTGCAGAAAGGTGATCCGGGCAC TCAGCAGGCCATCATCAAGGATGTCATCCCTGTTGGGTACTTTGTCACTATGCCTAGCGG CAAGGAGGCCTATCTTCCTGCTCAGGATCTTGGTTTCACAGGTGGGCTCGCCATACTCGA GCGTCTTTTCAAAGTGGGTCAAGAGATCACAGTGCGTGTTGCCTCCATTGGAGGCGGAGG GCGAGAAATTCTTTCTATCAAGAAACCGGAGCATGCGCCTCCAGAGAGGAAGTTCACTGT CAGCACAAATACCACCAATCGCTATGGTTCTAGGTACTGATTTGGTCTTATTGATCTGCT TGGGCATTAGCAACCTCTTTAGTAGCTCAGGTAAGTGCAACCTTTTCAGTTTATCTGCAT TAGCTGTCATGCCCCAAATGCACATACAGGTCATCACATTTTTGGTCTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3AM38 |
Definition |
sp|Q3AM38|PNP_SYNSC Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. (strain CC9605) |
Align length |
63 |
Score (bit) |
38.1 |
E-value |
0.047 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PEK9 |
Definition |
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
72 |
Score (bit) |
39.7 |
E-value |
0.19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949611|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_H06, 5' (710 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom... 40 0.19 tr|Q05WJ4|Q05WJ4_9SYNE Polyribonucleotide nucleotidyltransferase... 39 0.25 tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte... 39 0.33 tr|A3Z644|A3Z644_9SYNE Polyribonucleotide nucleotidyltransferase... 39 0.33 tr|A9RZ32|A9RZ32_PHYPA Elongation factor Ts (Fragment) OS=Physco... 39 0.33 tr|O24288|O24288_PEA Polynucleotide phosphorylase OS=Pisum sativ... 39 0.43 tr|A9BBJ7|A9BBJ7_PROM4 Polyribonucleotide nucleotidyltransferase... 38 0.57 tr|Q05YW2|Q05YW2_9SYNE RNA binding S1 OS=Synechococcus sp. BL107... 38 0.57 tr|A4CRM4|A4CRM4_SYNPV Polyribonucleotide nucleotidyltransferase... 38 0.57 tr|B1X3J9|B1X3J9_PAUCH Polyribonucleotide nucleotidyltransferase... 38 0.57 tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein OS=Exiguoba... 38 0.74 tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas... 38 0.74 tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct... 37 0.97 tr|Q2IFT4|Q2IFT4_ANADE Ribosomal protein S1 OS=Anaeromyxobacter ... 37 1.3 tr|Q08WR4|Q08WR4_STIAU RNA binding S1 OS=Stigmatella aurantiaca ... 37 1.3 tr|Q2QP54|Q2QP54_ORYSJ Elongation factor Ts OS=Oryza sativa subs... 37 1.3 tr|A2ZLC1|A2ZLC1_ORYSI Elongation factor Ts OS=Oryza sativa subs... 37 1.3 tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 37 1.6 tr|A8F7S1|A8F7S1_THELT RNA binding S1 domain protein OS=Thermoto... 37 1.6 tr|Q3Y178|Q3Y178_ENTFC RNA binding S1 OS=Enterococcus faecium DO... 37 1.6 tr|B7DTL3|B7DTL3_9BACL RNA binding S1 domain protein OS=Alicyclo... 37 1.6 tr|B2QDR6|B2QDR6_9BACL RNA binding S1 domain protein OS=Exiguoba... 37 1.6 tr|B4UDY4|B4UDY4_ANASK RNA binding S1 domain protein OS=Anaeromy... 36 2.2 tr|A9SG13|A9SG13_PHYPA Elongation factor Ts OS=Physcomitrella pa... 36 2.2 tr|A9SG12|A9SG12_PHYPA Predicted protein OS=Physcomitrella paten... 36 2.2 tr|A3Z0V4|A3Z0V4_9SYNE Polyribonucleotide nucleotidyltransferase... 36 2.8 tr|Q839B4|Q839B4_ENTFA S1 RNA-binding domain protein OS=Enteroco... 35 3.7 tr|B1HSW7|B1HSW7_LYSSC Hypothetical yabR protein OS=Lysinibacill... 35 3.7 tr|A7QRH7|A7QRH7_VITVI Chromosome chr8 scaffold_150, whole genom... 35 3.7 tr|Q0BTC6|Q0BTC6_GRABC Ribonuclease E OS=Granulibacter bethesden... 35 4.8
>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001 PE=4 SV=1 Length = 553
Score = 39.7 bits (91), Expect = 0.19 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +2
Query: 305 QAIIKDVIPVGYFVTMPSGKEAYLPAQDLGFTG-GLAILERLFKVGQEITVRVASIGGGG 481 + +K++ G F+++P G+E +LP + G G + +VGQE++VRV I G Sbjct: 267 EGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVLRI-SRG 325
Query: 482 REILSIKKPEHA 517 + L++KK E A Sbjct: 326 QVTLTMKKEEDA 337
>tr|Q05WJ4|Q05WJ4_9SYNE Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. RS9916 GN=RS9916_33752 PE=4 SV=1 Length = 721
Score = 39.3 bits (90), Expect = 0.25 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +2
Query: 314 IKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREIL 493 I +IP+G FV + GKE + L + +E + KVG E+TVRV I GR L Sbjct: 638 ITRIIPIGAFVEILPGKEGMIHISQLS-EARVEKVEDVVKVGDEVTVRVREIDNRGRINL 696
Query: 494 SIK----KPEHAPPE 526 +++ E A PE Sbjct: 697 TLRGVPQNGEEAAPE 711
>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512 PE=4 SV=1 Length = 150
Score = 38.9 bits (89), Expect = 0.33 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = +2
Query: 335 GYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREILSIKKPEH 514 G FV++P GK + ++ ++ + + L K GQE+ V+V I GR LSIKK Sbjct: 20 GAFVSLPEGKSGLVHISEIAYSYVNDVKDYL-KEGQEVKVKVIGIDENGRINLSIKKAMD 78
Query: 515 APP 523 PP Sbjct: 79 PPP 81
>tr|A3Z644|A3Z644_9SYNE Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. RS9917 GN=RS9917_08821 PE=4 SV=1 Length = 691
Score = 38.9 bits (89), Expect = 0.33 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%) Frame = +2
Query: 314 IKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREIL 493 I +IP+G FV + GKE + L + +E + KVG E+TVRV I GR L Sbjct: 608 ITRIIPIGAFVEILPGKEGMIHISQLS-EARVEKVEDVVKVGDEVTVRVREIDNRGRINL 666
Query: 494 SIK---------KPEHAP 520 +++ +PE AP Sbjct: 667 TLRGVPQNGEDAEPEPAP 684
>tr|A9RZ32|A9RZ32_PHYPA Elongation factor Ts (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_21938 PE=3 SV=1 Length = 854
Score = 38.9 bits (89), Expect = 0.33 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +2
Query: 314 IKDVIPVGYFVTMPS-GKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGG 478 +K++I G F+ P G+EA+L ++ G +E L VGQE+TVRV I G Sbjct: 158 VKNIIRNGAFIEFPEQGEEAFLRGSEVTEGGENVPIENLLTVGQEVTVRVLKIERG 213
>tr|O24288|O24288_PEA Polynucleotide phosphorylase OS=Pisum sativum GN=pnp PE=2 SV=1 Length = 897
Score = 38.5 bits (88), Expect = 0.43 Identities = 23/61 (37%), Positives = 33/61 (54%) Frame = +2
Query: 314 IKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREIL 493 IK ++P G FV + G+E +L +G LA E +FKVG I V++ I G+ L Sbjct: 767 IKSIVPYGVFVEIAPGREGLCYISELS-SGWLAKAEDVFKVGDHIDVKLTEINEKGQLRL 825
Query: 494 S 496 S Sbjct: 826 S 826
>tr|A9BBJ7|A9BBJ7_PROM4 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=P9211_12781 PE=4 SV=1 Length = 722
Score = 38.1 bits (87), Expect = 0.57 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = +2
Query: 314 IKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREIL 493 I +IP+G FV + GKE + L + +E + KVG E+TVRV I GR L Sbjct: 638 ITRIIPIGAFVEILPGKEGMIHISQLS-EARVEKVEDVVKVGDEVTVRVREIDNRGRINL 696
Query: 494 SIK 502 +++ Sbjct: 697 TLR 699
>tr|Q05YW2|Q05YW2_9SYNE RNA binding S1 OS=Synechococcus sp. BL107 GN=BL107_09621 PE=4 SV=1 Length = 721
Score = 38.1 bits (87), Expect = 0.57 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = +2
Query: 314 IKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREIL 493 I +IP+G FV + GKE + L + +E + KVG E+TVRV I GR L Sbjct: 638 ITRIIPIGAFVEILPGKEGMIHISQLS-EARVEKVEDVVKVGDEVTVRVREIDNRGRINL 696
Query: 494 SIK 502 +++ Sbjct: 697 TLR 699
>tr|A4CRM4|A4CRM4_SYNPV Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. (strain WH7805) GN=WH7805_13363 PE=4 SV=1 Length = 721
Score = 38.1 bits (87), Expect = 0.57 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = +2
Query: 314 IKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGGGREIL 493 I +IP+G FV + GKE + L + +E + KVG E+TVRV I GR L Sbjct: 638 ITRIIPIGAFVEILPGKEGMIHISQLS-EARVEKVEDVVKVGDEVTVRVREIDNRGRINL 696
Query: 494 SIK 502 +++ Sbjct: 697 TLR 699
>tr|B1X3J9|B1X3J9_PAUCH Polyribonucleotide nucleotidyltransferase OS=Paulinella chromatophora GN=pnp PE=4 SV=1 Length = 724
Score = 38.1 bits (87), Expect = 0.57 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Frame = +2
Query: 299 TQQAIIKDVIPVGYFVTMPSGKEAYLPAQDLGFTGGLAILERLFKVGQEITVRVASIGGG 478 T Q + +IP+G FV + GKE + L + ++ + KVG ++TVRV I Sbjct: 633 TFQGAVTRIIPIGAFVEILPGKEGMIHISQLS-ESRVEKVDDVVKVGDKVTVRVREIDNR 691
Query: 479 GREILSIK----KPEHAPPERKFTVSTN 550 GR L+++ H+ E +S+N Sbjct: 692 GRINLTLRGVPQDNSHSTQEPIVNISSN 719
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