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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949633
Clone id TST38A01NGRL0006_I06
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_I06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TGTAGCAGCGGGAACTCCAGAGTTTGTTGGCCGAGTCGAGTTTTCAATGCTGCAGGGGCC
TGTAGGTTGGATTTTCTCATCACGTGTGAAGTCTACGGGCGCAAAAGGGTCTGATGGGTA
GAGCTGCTAAAGCTGGGTCGGCAGAGCAGATGGCGAGTTCTTTATGTTAATCCTGCAATC
TCTGCATTCACCAGGTTACTTGTTGCGAAGGGTGTTGCCCGGCAGAAATCAGCATGGTTT
TGAGGGTCAAATTTTGACAGACTGAGGGTTTACATACTCGAGTAGGTTCACTTTTTCTGC
CAATTAAGAGTTTTTAGCTACTAAGCGGTGAAGAATCCCTCTACATTCCTGCATTAACAT
GTTATTTTTTTTTCCCCCCCCCAGAAGGCAATGCACATTAGAACCCCAAATCTCTCATAC
CTTGAAGCTACCTGATCACGATGGCTGGCCCTTGGCATCATACCTTTTTAACAGAATTGG
AAGATGTCCAGGCTTTGAATGAGTGCAACGAATTCAATAACCAAGGGCCGAACTCTGGAG
GTCAGGTTACTGAAGCTCGTATATCAGCAAGACGGCTGCATAAGGCTGATCGGGAGAAGC
TGAGACGGGATAAATTGAACGAGCAGTTTACAGAGCTTGCAAATGCACTTGATCC
■■Homology search results ■■ -
sp_hit_id Q9LT23
Definition sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis thaliana
Align length 31
Score (bit) 45.4
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949633|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_I06, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsi...    45   3e-04
sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis...    45   3e-04
sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsi...    35   0.45 
sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis...    35   0.45 
sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsi...    33   1.3  
sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis...    33   1.3  
sp|Q54SU1|KBP_DICDI Protein KBP homolog OS=Dictyostelium discoid...    31   5.0  
sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I...    31   5.0  
sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis th...    30   8.5  
sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase OS=Ralstoni...    30   8.5  

>sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis
           thaliana GN=BHLH121 PE=2 SV=1
          Length = 337

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +3

Query: 561 ISARRLHKADREKLRRDKLNEQFTELANALD 653
           +SAR+  KA REKLRR+KLNE F EL N LD
Sbjct: 56  VSARKSQKAGREKLRREKLNEHFVELGNVLD 86


>sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis
           thaliana GN=BHLH11 PE=2 SV=2
          Length = 286

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 516 NNQGPNSGG--QVTEARISARRLHKADREKLRRDKLNEQFTELANALD 653
           ++ G N  G   V E +  A    KA+REKLRRDKL EQF EL NALD
Sbjct: 25  SSSGQNLRGAEMVVEVKKEAVCSQKAEREKLRRDKLKEQFLELGNALD 72


>sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis
           thaliana GN=BHLH115 PE=2 SV=1
          Length = 226

 Score = 34.7 bits (78), Expect = 0.45
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +3

Query: 582 KADREKLRRDKLNEQFTELANALD 653
           KA REK RRD+LN++FTEL++ L+
Sbjct: 71  KACREKQRRDRLNDKFTELSSVLE 94


>sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis
           thaliana GN=BHLH47 PE=2 SV=1
          Length = 240

 Score = 34.7 bits (78), Expect = 0.45
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = +3

Query: 570 RRLHKADREKLRRDKLNEQFTELANALD 653
           +R++KA RE+L+R+ LNE F ELA+ L+
Sbjct: 28  KRINKAVRERLKREHLNELFIELADTLE 55


>sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsis
           thaliana GN=BHLH104 PE=2 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +3

Query: 582 KADREKLRRDKLNEQFTELANALD 653
           KA RE+LRR+KLNE+F +L++ L+
Sbjct: 135 KACRERLRREKLNERFMDLSSVLE 158


>sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis
           thaliana GN=BHLH34 PE=2 SV=1
          Length = 320

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +3

Query: 582 KADREKLRRDKLNEQFTELANALD 653
           KA REKLRR+KLN++F +L++ L+
Sbjct: 167 KACREKLRREKLNDKFMDLSSVLE 190


>sp|Q54SU1|KBP_DICDI Protein KBP homolog OS=Dictyostelium discoideum
           GN=kbp PE=3 SV=1
          Length = 626

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 465 FLTELEDVQALNECNEFNNQGPNSGGQ----VTEARISARRLHKADREKLRRDKL-NEQF 629
           FL    D++ LN C+  NN   N+  +      +  +S+  L    +EK + DKL NE  
Sbjct: 279 FLHFFRDIENLNHCHRVNNNNKNNNNENDIDFVQGGLSSISLSDKQKEKEKEDKLFNENQ 338

Query: 630 TELANALD 653
            +    LD
Sbjct: 339 IKKEKMLD 346


>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
           GN=ITGA3 PE=1 SV=2
          Length = 1066

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 194 LVNAEIAGLT*RTRHLLCRPSFSSSTHQTLLRP*TSHVMRKSNLQAPAALKT 39
           L+  E+ G+T  TR L  +   S+S+HQ  L+P T  +     LQA  +L T
Sbjct: 717 LIAFEVIGVTLHTRDLKAQLQLSTSSHQDNLQPMTLILQVDYTLQASLSLMT 768


>sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis
           thaliana GN=ILR3 PE=1 SV=1
          Length = 234

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 582 KADREKLRRDKLNEQFTELANALD 653
           KA REK RRD+LN++F EL   L+
Sbjct: 76  KACREKQRRDRLNDKFMELGAILE 99


>sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase OS=Ralstonia
           solanacearum GN=pepA PE=3 SV=1
          Length = 506

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 16  SRVCWPSRVFNAAGACRLDFLITCEVYGRKRV*WVELLKLG 138
           S +C P+ + N A     DF +  EV GRK+   +E LK+G
Sbjct: 206 SNICTPTYLANTARQIAKDFKLKVEVLGRKQ---IEALKMG 243
tr_hit_id B6UE48
Definition tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain containing protein OS=Zea mays
Align length 47
Score (bit) 52.4
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949633|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_I06, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain conta...    52   2e-05
tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|A9SY51|A9SY51_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome ...    52   4e-05
tr|A5BHC0|A5BHC0_VITVI Putative uncharacterized protein OS=Vitis...    52   4e-05
tr|A7QDX7|A7QDX7_VITVI Chromosome chr4 scaffold_83, whole genome...    51   7e-05
tr|A5B1V8|A5B1V8_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|Q0E1J5|Q0E1J5_ORYSJ Os02g0433200 protein OS=Oryza sativa subs...    49   3e-04
tr|A5B432|A5B432_VITVI Putative uncharacterized protein OS=Vitis...    49   3e-04
tr|Q67U21|Q67U21_ORYSJ Os02g0433600 protein OS=Oryza sativa subs...    49   3e-04
tr|B8AGP0|B8AGP0_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|A9SV25|A9SV25_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|B7FJ19|B7FJ19_MEDTR Putative uncharacterized protein OS=Medic...    44   0.011
tr|B8A2P8|B8A2P8_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.025
tr|B6T4L8|B6T4L8_MAIZE Amelogenin like protein OS=Zea mays PE=2 ...    42   0.025
tr|Q6XNP2|Q6XNP2_ORYSJ Putative transcription factor bHLH OS=Ory...    40   0.12 
tr|Q69V10|Q69V10_ORYSJ Os07g0628500 protein OS=Oryza sativa subs...    40   0.12 
tr|B8B4W8|B8B4W8_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.12 
tr|A7QI80|A7QI80_VITVI Chromosome chr17 scaffold_101, whole geno...    40   0.12 
tr|A3BMG0|A3BMG0_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.12 
tr|Q2R1K8|Q2R1K8_ORYSJ Helix-loop-helix DNA-binding domain conta...    40   0.16 
tr|A7PMT1|A7PMT1_VITVI Chromosome chr14 scaffold_21, whole genom...    40   0.16 
tr|B4FPI9|B4FPI9_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.21 
tr|A5BHW5|A5BHW5_VITVI Putative uncharacterized protein OS=Vitis...    39   0.21 
tr|B3SK43|B3SK43_ARALP At4g36060-like protein (Fragment) OS=Arab...    39   0.36 
tr|B3SK38|B3SK38_ARALP At4g36060-like protein (Fragment) OS=Arab...    39   0.36 
tr|B3SK34|B3SK34_ARALY At4g36060-like protein (Fragment) OS=Arab...    39   0.36 
tr|B3SK31|B3SK31_ARALY At4g36060-like protein (Fragment) OS=Arab...    39   0.36 
tr|B3SK30|B3SK30_ARALY At4g36060-like protein (Fragment) OS=Arab...    39   0.36 
tr|B3SK22|B3SK22_ARALP At4g36060-like protein (Fragment) OS=Arab...    39   0.36 

>tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 316

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
 Frame = +3

Query: 525 GPNSGGQVTEAR----ISARRLHKADREKLRRDKLNEQFTELANALD 653
           G + G Q  E +     SAR++ KADREK+RRDKLNEQF +L NALD
Sbjct: 11  GTHHGSQRAECKSQGSTSARKVQKADREKMRRDKLNEQFQDLGNALD 57


>tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71136 PE=4 SV=1
          Length = 514

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = +3

Query: 525 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELANALD 653
           GP+  G       S R++HKADREKLRRD+LNEQF ELA  LD
Sbjct: 99  GPSENGDAA----SVRKVHKADREKLRRDRLNEQFGELAGVLD 137


>tr|A9SY51|A9SY51_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167103 PE=4 SV=1
          Length = 645

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 26/43 (60%), Positives = 29/43 (67%)
 Frame = +3

Query: 525 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELANALD 653
           GP   G       S R++HKADREKLRRD+LNEQF ELA  LD
Sbjct: 195 GPTENGDTA----SVRKVHKADREKLRRDRLNEQFGELAGVLD 233


>tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036056001
           PE=4 SV=1
          Length = 329

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +3

Query: 561 ISARRLHKADREKLRRDKLNEQFTELANALD 653
           ++AR++ KADREKLRRD+LNEQF EL NALD
Sbjct: 43  VTARKVQKADREKLRRDRLNEQFIELGNALD 73


>tr|A5BHC0|A5BHC0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018451 PE=4 SV=1
          Length = 378

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +3

Query: 561 ISARRLHKADREKLRRDKLNEQFTELANALD 653
           ++AR++ KADREKLRRD+LNEQF EL NALD
Sbjct: 92  VTARKVQKADREKLRRDRLNEQFIELGNALD 122


>tr|A7QDX7|A7QDX7_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036779001
           PE=4 SV=1
          Length = 292

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 10/52 (19%)
 Frame = +3

Query: 528 PNSGGQVTEAR----------ISARRLHKADREKLRRDKLNEQFTELANALD 653
           P+S  ++ EAR          I+AR++ KADREKLRRD+LNE F EL N LD
Sbjct: 27  PSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTLD 78


>tr|A5B1V8|A5B1V8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019798 PE=4 SV=1
          Length = 332

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 10/52 (19%)
 Frame = +3

Query: 528 PNSGGQVTEAR----------ISARRLHKADREKLRRDKLNEQFTELANALD 653
           P+S  ++ EAR          I+AR++ KADREKLRRD+LNE F EL N L+
Sbjct: 26  PSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTLE 77


>tr|Q0E1J5|Q0E1J5_ORYSJ Os02g0433200 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0433200 PE=4 SV=1
          Length = 105

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +3

Query: 525 GPNSGGQV---TEARISARRLHKADREKLRRDKLNEQFTELANAL 650
           GP  GG+    T+  I+ R++ KADREK+RRD+LNEQF EL + L
Sbjct: 32  GPFLGGKTECKTQGSIATRKVQKADREKMRRDRLNEQFQELGSTL 76


>tr|A5B432|A5B432_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029413 PE=4 SV=1
          Length = 1086

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +3

Query: 561 ISARRLHKADREKLRRDKLNEQFTELANALD 653
           + AR++ KADREKL+RD+LNEQF EL NALD
Sbjct: 560 VIARKVQKADREKLKRDRLNEQFIELRNALD 590


>tr|Q67U21|Q67U21_ORYSJ Os02g0433600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0065F08.2 PE=2 SV=1
          Length = 343

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +3

Query: 549 TEARISARRLHKADREKLRRDKLNEQFTELANALD 653
           T+  I+ R++ KADREK+RRD+LNEQF EL + LD
Sbjct: 33  TQGSIATRKVQKADREKMRRDRLNEQFQELGSTLD 67