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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949639
Clone id TST38A01NGRL0006_I13
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_I13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCCGATTCTTTCTTCAAAATTCCAGATGATGACAGCAGTGAGAATGTTGAAGGTTCTGAG
GCACTGCCTCAGGGGAAAGTTTTACTGGTTGAAGACAAAGCAGCCAATGATGGCATTTAT
CGTGGTGAGAATGTCAACATGGGTACCATTGTTGTTGCTGAAGTCCAAAGCAGAGCACTG
GTGGAAGGCAGACCCGTTCTGACTTGTAGAAGATTGGCACGGAGTCTTGCATTTGTACGA
ATTGAACAGATAATGAGAACTGGGGAGCCCATTCAGATGGAGATCAATCAGAGCAATGAT
GGAGGTCTCCAGGGTTATGTGGAGGGTGTGCGAGCTTTTCTTCCCAGATCAGAGCTTCTC
AGAAGGCCAGAGAGCAGTGCTGCGCTGCAAGACTATATTGGAAAGACACTGAGGGTGGCA
ATATTACAGGCAGAGGAGTACTCTTCAAATGTCATCATAAGTGAAGCTAAACTTTGGATG
AGCGAGAACTTACTACTTGGAACTGTGCATGACTTGGTCATCACGAGGTTGTATCCTTAC
GGGATGCAGGTCGAAGTTATTGGCACAAGGATCAGAGGTTTTATACATATCTCAAGCATT
TCAAGGGGTTATGTCACCTCCCTTGCCACATTTTT
■■Homology search results ■■ -
sp_hit_id P74142
Definition sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803)
Align length 152
Score (bit) 79.7
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949639|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_I13, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synec...    80   1e-14
sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus el...    70   9e-12
sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=P...    69   2e-11
sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=P...    69   3e-11
sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=S...    66   2e-10
sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp...    61   4e-09
sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tu...    59   2e-08
sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synec...    58   4e-08
sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening...    57   1e-07
sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillu...    55   4e-07
sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium le...    54   7e-07
sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate re...    52   2e-06
sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidic...    49   3e-05
sp|Q895G2|ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate re...    49   3e-05
sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillu...    47   8e-05
sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexner...    47   1e-04
sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli...    47   1e-04
sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli...    47   1e-04
sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli...    47   1e-04
sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas...    45   3e-04
sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus infl...    45   3e-04
sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeru...    45   4e-04
sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia murida...    44   7e-04
sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium melilo...    44   0.001
sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumo...    44   0.001
sp|P50889|RS1_LEULA 40S ribosomal protein S1 OS=Leuconostoc lact...    43   0.001
sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia tracho...    43   0.001
sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus h...    43   0.002
sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burneti...    42   0.002
sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidic...    42   0.003

>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B
           OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3
           SV=1
          Length = 305

 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 42/152 (27%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
 Frame = +1

Query: 184 EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLR 363
           EG+  L+ R+L    ++  + ++  +G+ ++M +  +N GG+ G VEG+R F+PRS L+ 
Sbjct: 90  EGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMH 149

Query: 364 RPESSAALQDYIGKTLRVAILQAEEYSSNVIISEAKLWMSEN---LLLGTVHDLVITRLY 534
           +    A     +G+ L+  IL+A + ++ +++++ ++  +E+   +  G +++  + ++ 
Sbjct: 150 KDNMDA----LVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQ 205

Query: 535 PYGMQVEVIGTRIRGFIHISSISRGYVTSLAT 630
           PYG+ VE+ G  + G +H+S +S   V SL T
Sbjct: 206 PYGVFVEIEG--VTGLLHVSQVSGTRVDSLNT 235


>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus
           elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1
          Length = 295

 Score = 70.1 bits (170), Expect = 9e-12
 Identities = 43/150 (28%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
 Frame = +1

Query: 184 EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLR 363
           +G+  ++ R LA   A+ R+ ++   G+ +Q+++  SN GG+   +EG+RAF+PRS L  
Sbjct: 89  DGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNE 148

Query: 364 RPESSAALQDYIGKTLRVAILQAEEYSSNVIISE---AKLWMSENLLLGTVHDLVITRLY 534
           + +    L    GKTL VA L+       +++SE   A+  +   + +G + +  +T L 
Sbjct: 149 KED----LDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLK 204

Query: 535 PYGMQVEVIGTRIRGFIHISSISRGYVTSL 624
           P+G+ V++ G      + I+ IS+ +V  +
Sbjct: 205 PFGVFVDLGGA--TALLPINQISQKFVADV 232


>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic
           OS=Porphyra yezoensis GN=rps1 PE=3 SV=2
          Length = 263

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 48/187 (25%), Positives = 99/187 (52%), Gaps = 8/187 (4%)
 Frame = +1

Query: 67  PQGKVLLVEDKAANDGIYRGENVNMGT-----IVVAEVQSRALVEGRPVLTCRRLARSLA 231
           P    L +++ ++N  +    ++N+       ++   +QS+ L+     L+ RRL    A
Sbjct: 49  PISAYLPIQEVSSNQDLNNFTSLNINDTREFFLLDYNIQSKQLI-----LSIRRLEYIRA 103

Query: 232 FVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAALQDYIGKTL 411
           + RI Q++     + + I   N GG+   +EG+  F+P S L    +S    + +  K +
Sbjct: 104 WKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKS----EQFNNKFI 159

Query: 412 RVAILQAEEYSSNVIISEAKLWMSE---NLLLGTVHDLVITRLYPYGMQVEVIGTRIRGF 582
           ++ +L  EE S+N+I+S  +  +S+   NL++G + + +I ++ PYG+ ++V    ++G 
Sbjct: 160 KLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKV--GNLKGL 217

Query: 583 IHISSIS 603
           +HIS I+
Sbjct: 218 VHISEIN 224


>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic
           OS=Porphyra purpurea GN=rps1 PE=3 SV=1
          Length = 263

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 48/187 (25%), Positives = 98/187 (52%), Gaps = 8/187 (4%)
 Frame = +1

Query: 67  PQGKVLLVEDKAANDGIYRGENVNMGT-----IVVAEVQSRALVEGRPVLTCRRLARSLA 231
           P    L +++ ++N  +    ++N+       ++   V+SR L+     L+ RRL    A
Sbjct: 49  PVSAYLPIQEVSSNQELNNFNSLNINDTREFFLLDYNVESRQLI-----LSIRRLEYIRA 103

Query: 232 FVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAALQDYIGKTL 411
           + RI Q++     + + I   N GG+   +EG+  F+P S L    +++++   +I    
Sbjct: 104 WKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFI---- 159

Query: 412 RVAILQAEEYSSNVIISEAKLWM---SENLLLGTVHDLVITRLYPYGMQVEVIGTRIRGF 582
           ++ +L  EE S+N+I+S  +  +   S NL++G + + VI ++ PYG+ ++     ++G 
Sbjct: 160 KLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIK--AGNLKGL 217

Query: 583 IHISSIS 603
           +HIS I+
Sbjct: 218 VHISEIN 224


>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic
           OS=Spinacia oleracea GN=RPS1 PE=1 SV=1
          Length = 411

 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 46/179 (25%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
 Frame = +1

Query: 115 IYRGENVNMGTIVVAEVQSRALV-----EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQM 279
           IYR +NV    I+    +   ++     +   +L+ R++   LA+ R  Q+      ++ 
Sbjct: 130 IYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKG 189

Query: 280 EINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAALQDYIGKTLRVAILQAEEYSSNVII 459
           +I  +N GG+   VEG+R F+P S++     S ++ ++ + K + +  ++ +E  S +++
Sbjct: 190 KIVGANKGGVVALVEGLRGFVPFSQI----SSKSSAEELLEKEIPLKFVEVDEEQSRLVM 245

Query: 460 SEAKLWMSE--NLLLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSISRGYVTSLAT 630
           S  K        L +G+V    +  L PYG  +++ G  I G +H+S IS   V+ +AT
Sbjct: 246 SNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGG--INGLLHVSQISHDRVSDIAT 302


>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA
           PE=1 SV=4
          Length = 307

 Score = 61.2 bits (147), Expect = 4e-09
 Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
 Frame = +1

Query: 184 EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLR 363
           +G+  L+ RR+    A+ R+ Q+      ++ E+  +N GG    +EG+R F+P S +  
Sbjct: 93  DGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHIST 152

Query: 364 RPESSAALQDYIGKTLRVAILQAEEYSSNVIISEAKLWMS---ENLLLGTVHDLVITRLY 534
           R     A +D +G+ L +  L+ +E  + +++S  +  +      L +G V    +  + 
Sbjct: 153 R----KAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIK 208

Query: 535 PYGMQVEVIGTRIRGFIHISSISRGYV 615
           PYG  +++ G  + G +HIS IS  ++
Sbjct: 209 PYGAFIDIGG--VSGLLHISEISHDHI 233


>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium
           tuberculosis GN=rpsA PE=3 SV=1
          Length = 481

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 12/171 (7%)
 Frame = +1

Query: 127 ENVNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGG 306
           E V++G  V A V ++   EGR +L+ +R     A+  IE +    E ++  + +   GG
Sbjct: 78  EVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGG 137

Query: 307 LQGYVEGVRAFLPRSEL-LRRPESSAALQDYIGKTLRVAILQAEEYSSNVIISEAKLWMS 483
           L   + G+R FLP S + +RR      LQ YIGK +   I++ ++  +NV++S  + W+ 
Sbjct: 138 LILDI-GLRGFLPASLVEMRRVRD---LQPYIGKEIEAKIIELDKNRNNVVLSR-RAWLE 192

Query: 484 E-----------NLLLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSIS 603
           +           NL  GT+   V++ +  +G  V++ G  + G +H+S +S
Sbjct: 193 QTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGG--VDGLVHVSELS 241


>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A
           OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3
           SV=1
          Length = 328

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
 Frame = +1

Query: 184 EGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLR 363
           +G+  L+ RR+    A+ R+ Q+      ++  +  +N GG    +EG+R F+P S +  
Sbjct: 92  DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISA 151

Query: 364 RPESSAALQDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENLLLGTVHDLV---ITRLY 534
           R     A +D +G+ L +  L+ +E  + +++S  +  +   +    V  +V   +  + 
Sbjct: 152 R----EAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIK 207

Query: 535 PYGMQVEVIGTRIRGFIHISSISRGYV 615
           PYG  +++ G  + G +HIS IS  ++
Sbjct: 208 PYGAFIDIGG--VSGLLHISEISHDHI 232


>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria
           meningitidis serogroup B GN=rpsA PE=1 SV=1
          Length = 561

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
 Frame = +1

Query: 133 VNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQ 312
           V +G  V   ++S     G   L+  +  R+  ++ +E+ M  G+ +   IN    GGL 
Sbjct: 63  VKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLT 122

Query: 313 GYVEGVRAFLPRSELLRRPESSAALQDYIGKTLRVAILQAEEYSSNVIIS---------- 462
             +  +RAFLP S +  RP    +   + GK +   +++ ++  +NV++S          
Sbjct: 123 VMISSIRAFLPGSLVDVRPVKDTS--HFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLG 180

Query: 463 EAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSIS 603
           E +  + ENL  G+V   ++  +  YG  V++ G  I G +HI+ ++
Sbjct: 181 EERKALLENLQEGSVIKGIVKNITDYGAFVDLGG--IDGLLHITDLA 225


>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus
           subtilis GN=ypfD PE=1 SV=1
          Length = 382

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
 Frame = +1

Query: 43  NVEGSEALPQGKVLLVEDKAANDGIYRGENVNMGTIVVAEVQSRALVEGRPVLTCRRLAR 222
           NV+ S  +P  ++  +  + A+D +   + +++    V +V+  AL+     L+ R +  
Sbjct: 37  NVKQSGIIPISELSSLHVEKASDVVKVDDELDLK---VTKVEDDALI-----LSKRAVDA 88

Query: 223 SLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAALQDYIG 402
             A+  +E+   T E  + E+     GGL   + GVR F+P S  L          DY G
Sbjct: 89  DRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPAS--LVEAHFVEDFTDYKG 145

Query: 403 KTLRVAILQAEEYSSNVIISEAKLWMSE----------NLLLGTVHDLVITRLYPYGMQV 552
           KTL + +++ +   + VI+S   +  SE          +L +G+V D  + RL  +G  V
Sbjct: 146 KTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFV 205

Query: 553 EVIGTRIRGFIHISSISRGYV 615
           ++ G  I G +HIS +S  +V
Sbjct: 206 DIGG--IDGLVHISQLSHSHV 224
tr_hit_id Q5ZC75
Definition tr|Q5ZC75|Q5ZC75_ORYSJ cDNA clone:J013110C21, full insert sequence OS=Oryza sativa subsp. japonica
Align length 200
Score (bit) 134.0
E-value 4.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949639|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_I13, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ZC75|Q5ZC75_ORYSJ cDNA clone:J013110C21, full insert sequen...   134   4e-30
tr|B8AB36|B8AB36_ORYSI Putative uncharacterized protein OS=Oryza...   134   4e-30
tr|A7QRK4|A7QRK4_VITVI Chromosome undetermined scaffold_151, who...   127   7e-28
tr|A3B688|A3B688_ORYSJ Putative uncharacterized protein OS=Oryza...   122   2e-26
tr|Q0DGF0|Q0DGF0_ORYSJ Os05g0535800 protein OS=Oryza sativa subs...   117   6e-25
tr|Q9M9H4|Q9M9H4_ARATH F14O23.10 protein OS=Arabidopsis thaliana...   115   2e-24
tr|A2Y6W7|A2Y6W7_ORYSI Putative uncharacterized protein OS=Oryza...   111   3e-23
tr|A9RDY1|A9RDY1_PHYPA Predicted protein OS=Physcomitrella paten...   102   3e-20
tr|B8AB73|B8AB73_ORYSI Putative uncharacterized protein OS=Oryza...   101   4e-20
tr|A9TKV9|A9TKV9_PHYPA Predicted protein OS=Physcomitrella paten...   101   4e-20
tr|A9RXC5|A9RXC5_PHYPA Predicted protein OS=Physcomitrella paten...   100   6e-20
tr|Q6L5I7|Q6L5I7_ORYSJ Putative 30S ribosomal protein S1 OS=Oryz...    93   2e-17
tr|A2ZUW9|A2ZUW9_ORYSJ Putative uncharacterized protein OS=Oryza...    86   2e-15
tr|B7K791|B7K791_9CHRO RNA binding S1 domain protein OS=Cyanothe...    80   1e-13
tr|B7JUD6|B7JUD6_SYNP8 RNA binding S1 domain protein OS=Synechoc...    78   4e-13
tr|B4BX76|B4BX76_9CHRO RNA binding S1 domain protein OS=Cyanothe...    78   4e-13
tr|Q56XP0|Q56XP0_ARATH RIBOSOMAL PROTEIN OS=Arabidopsis thaliana...    76   1e-12
tr|A8G3P5|A8G3P5_PROM2 Ribosomal protein S1 OS=Prochlorococcus m...    75   3e-12
tr|Q0QKJ9|Q0QKJ9_9SYNE 30S ribosomal protein S1 homolog B OS=unc...    75   3e-12
tr|Q7U5G7|Q7U5G7_SYNPX 30S ribosomal protein S1 homolog B, putat...    75   3e-12
tr|A2BVJ2|A2BVJ2_PROM5 30S ribosomal protein S1 protein B, putat...    75   3e-12
tr|Q31C04|Q31C04_PROM9 SSU ribosomal protein S1P OS=Prochlorococ...    75   4e-12
tr|B7DUB2|B7DUB2_9BACL RNA binding S1 domain protein OS=Alicyclo...    74   6e-12
tr|B4WRF0|B4WRF0_9SYNE S1 RNA binding domain protein OS=Synechoc...    74   6e-12
tr|Q3ALN4|Q3ALN4_SYNSC RNA binding S1 OS=Synechococcus sp. (stra...    74   7e-12
tr|A3PBQ4|A3PBQ4_PROM0 30S ribosomal protein S1-like protein B, ...    74   7e-12
tr|Q0QKQ2|Q0QKQ2_9SYNE 30S ribosomal protein S1 homolog B OS=unc...    74   1e-11
tr|Q4C3R0|Q4C3R0_CROWT RNA binding S1 OS=Crocosphaera watsonii G...    73   1e-11
tr|Q0QKF1|Q0QKF1_9SYNE 30S ribosomal protein S1 homolog B OS=unc...    73   1e-11
tr|Q0QM09|Q0QM09_9SYNE 30S ribosomal protein S1-like protein B O...    73   2e-11

>tr|Q5ZC75|Q5ZC75_ORYSJ cDNA clone:J013110C21, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0415C01.8 PE=2 SV=1
          Length = 438

 Score =  134 bits (338), Expect = 4e-30
 Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 9/200 (4%)
 Frame = +1

Query: 55  SEALPQ--GKVLLVEDKAANDGIYR-GEN------VNMGTIVVAEVQSRALVEGRPVLTC 207
           +EA P   G V  V   AA +G  + GE       V  GT+V AEV  R L  GRP+L+ 
Sbjct: 131 AEAAPPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTL-SGRPLLSA 189

Query: 208 RRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAAL 387
           RRL R LA+ R  Q+M+  EPI+++I + N GGL   +EG+RAFLP+ EL+ R  +   L
Sbjct: 190 RRLFRRLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDL 249

Query: 388 QDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGT 567
           ++ +G ++RV I + +E ++++IISE K W    L  GT+   ++ +++PYG QV + GT
Sbjct: 250 KNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPYGAQVRIAGT 309

Query: 568 RIRGFIHISSISRGYVTSLA 627
              G +HIS+ISRG V S++
Sbjct: 310 NRSGLLHISNISRGRVLSVS 329


>tr|B8AB36|B8AB36_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02640 PE=4 SV=1
          Length = 361

 Score =  134 bits (338), Expect = 4e-30
 Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 9/200 (4%)
 Frame = +1

Query: 55  SEALPQ--GKVLLVEDKAANDGIYR-GEN------VNMGTIVVAEVQSRALVEGRPVLTC 207
           +EA P   G V  V   AA +G  + GE       V  GT+V AEV  R L  GRP+L+ 
Sbjct: 131 AEAAPPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTL-SGRPLLSA 189

Query: 208 RRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAAL 387
           RRL R LA+ R  Q+M+  EPI+++I + N GGL   +EG+RAFLP+ EL+ R  +   L
Sbjct: 190 RRLFRRLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDL 249

Query: 388 QDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGT 567
           ++ +G ++RV I + +E ++++IISE K W    L  GT+   ++ +++PYG QV + GT
Sbjct: 250 KNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPYGAQVRIAGT 309

Query: 568 RIRGFIHISSISRGYVTSLA 627
              G +HIS+ISRG V S++
Sbjct: 310 NRSGLLHISNISRGRVLSVS 329


>tr|A7QRK4|A7QRK4_VITVI Chromosome undetermined scaffold_151, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005394001 PE=4 SV=1
          Length = 507

 Score =  127 bits (318), Expect = 7e-28
 Identities = 70/195 (35%), Positives = 118/195 (60%), Gaps = 2/195 (1%)
 Frame = +1

Query: 49  EGSEALPQGKVLLV--EDKAANDGIYRGENVNMGTIVVAEVQSRALVEGRPVLTCRRLAR 222
           +  E +  GK+ +V  +D  +   +     V  GT++ AEV  R L  GRP+L+ RR  R
Sbjct: 215 DAEEFMVHGKMSIVRNDDALSRVPMQGSPVVETGTVLFAEVLGRTL-SGRPLLSTRRFFR 273

Query: 223 SLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAALQDYIG 402
            +A+ R+ QI +  EPI++ I + N GGL   +EG+RAFLP++ELL R +S   L++ +G
Sbjct: 274 RIAWHRVRQIKQLNEPIEVRITEWNTGGLLTRIEGLRAFLPKAELLNRVKSFTELKENVG 333

Query: 403 KTLRVAILQAEEYSSNVIISEAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGTRIRGF 582
           + L V I + +E  +++I+SE   W   +L  GT+ +  + +++PYG Q+ +  +   G 
Sbjct: 334 RRLYVQITRIDEAKNDLILSEKDAWEKSHLQEGTLLEGTVKKIFPYGAQIMIGESNRSGL 393

Query: 583 IHISSISRGYVTSLA 627
           +HIS+I+R  VTS++
Sbjct: 394 LHISNITRARVTSVS 408


>tr|A3B688|A3B688_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018560 PE=4 SV=1
          Length = 598

 Score =  122 bits (306), Expect = 2e-26
 Identities = 63/164 (38%), Positives = 105/164 (64%)
 Frame = +1

Query: 133 VNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQ 312
           + +GT+V  EV  R L  GRP+L+ RRL R +A+ R+ QI +   PI+++I + N GGL 
Sbjct: 191 LGVGTVVFTEVLGRTL-GGRPLLSARRLFRRVAWHRVRQIKQLNVPIKVKIFEWNAGGLL 249

Query: 313 GYVEGVRAFLPRSELLRRPESSAALQDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENL 492
             +EG+RAFLP+ E++ RP +   L++ +G+ + V I + +E ++ +IISE + W    L
Sbjct: 250 TRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEAWAMTYL 309

Query: 493 LLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSISRGYVTSL 624
             GT+    + +L+PYG Q+ +  T   G +H+S+I+RG +TS+
Sbjct: 310 REGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSV 353


>tr|Q0DGF0|Q0DGF0_ORYSJ Os05g0535800 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0535800 PE=4 SV=1
          Length = 592

 Score =  117 bits (293), Expect = 6e-25
 Identities = 63/164 (38%), Positives = 105/164 (64%)
 Frame = +1

Query: 133 VNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQ 312
           + +GT+V  EV  R L  GRP+L+ RRL R +A+ RI+Q+     PI+++I + N GGL 
Sbjct: 248 LGVGTVVFTEVLGRTL-GGRPLLSARRLFRRVAWHRIKQL---NVPIKVKIFEWNAGGLL 303

Query: 313 GYVEGVRAFLPRSELLRRPESSAALQDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENL 492
             +EG+RAFLP+ E++ RP +   L++ +G+ + V I + +E ++ +IISE + W    L
Sbjct: 304 TRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEAWAMTYL 363

Query: 493 LLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSISRGYVTSL 624
             GT+    + +L+PYG Q+ +  T   G +H+S+I+RG +TS+
Sbjct: 364 REGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSV 407


>tr|Q9M9H4|Q9M9H4_ARATH F14O23.10 protein OS=Arabidopsis thaliana
           GN=F14O23.10 PE=4 SV=1
          Length = 500

 Score =  115 bits (288), Expect = 2e-24
 Identities = 68/200 (34%), Positives = 118/200 (59%), Gaps = 7/200 (3%)
 Frame = +1

Query: 49  EGSEALPQGKVLLVEDKAANDGIYRGEN-------VNMGTIVVAEVQSRALVEGRPVLTC 207
           +  E L  GK+ +V+D   ++G+   E        V +GT+V AEV  R L  GRP+L+ 
Sbjct: 208 DAEEFLVNGKMGIVKDD--DEGVEIAEFARQGRPVVEIGTVVFAEVLGRTL-SGRPLLSS 264

Query: 208 RRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAAL 387
           RR  R +A+ R+ QI +  EPI+++I + N GGL   +EG+RAF+P+ EL+++  +   L
Sbjct: 265 RRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTEL 324

Query: 388 QDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGT 567
           ++ +G+   V I +  E  +++I+SE   W    L  GT+ +  + ++ PYG QV++  +
Sbjct: 325 KENVGRRFLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDS 384

Query: 568 RIRGFIHISSISRGYVTSLA 627
              G +HIS+I+R  + S++
Sbjct: 385 SRSGLLHISNITRRRIGSVS 404


>tr|A2Y6W7|A2Y6W7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20772 PE=4 SV=1
          Length = 536

 Score =  111 bits (278), Expect = 3e-23
 Identities = 65/184 (35%), Positives = 107/184 (58%), Gaps = 20/184 (10%)
 Frame = +1

Query: 133 VNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQI-----------MRTGE---- 267
           + +GT+V  EV  R L  GRP+L+ RRL R +A+ R+ Q+           MR  E    
Sbjct: 245 LGVGTVVFTEVLGRTL-GGRPLLSARRLFRRVAWHRVRQLISISISEKMRPMRKDEADTI 303

Query: 268 -----PIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAALQDYIGKTLRVAILQA 432
                PI+++I + N GGL   +EG+RAFLP+ E++ RP +   L++ +G+ + V I + 
Sbjct: 304 KQLNVPIKVKIFEWNAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRI 363

Query: 433 EEYSSNVIISEAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSISRGY 612
           +E ++ +IISE + W    L  GT+    + +L+PYG Q+ +  T   G +H+S+I+RG 
Sbjct: 364 DEKANELIISEKEAWAMTYLREGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQ 423

Query: 613 VTSL 624
           +TS+
Sbjct: 424 LTSV 427


>tr|A9RDY1|A9RDY1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64823 PE=4 SV=1
          Length = 558

 Score =  102 bits (253), Expect = 3e-20
 Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
 Frame = +1

Query: 133 VNMGTIVVAEVQSRALVEGRPVLTCRRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQ 312
           V++GT++  EV       GR +L+ R+ A+ + + RI QI    EP ++ I   N  GL 
Sbjct: 335 VDIGTVLDMEVVG-ITTSGRALLSARKAAQRIEWNRIMQIKEEDEPFEITITGFNKAGLL 393

Query: 313 GYVEGVRAFLPRSELLRRPESSAA--LQDYIGKTLRVAILQAEEYSSNVIISEAKLWMSE 486
             VEG+RAFLP +EL+ +P+ S     + Y+G TL V+I  A+E   N+++SE   W+  
Sbjct: 394 ARVEGLRAFLPHAELVNQPDISKGENYEPYVGSTLWVSIAFAKEIEGNLVLSEKIAWIKR 453

Query: 487 NLLLGTVHDLVITRLYPYGMQVEV 558
            L +G++HD ++ +LYPYG  V+V
Sbjct: 454 RLQVGSLHDGIVAQLYPYGALVKV 477


>tr|B8AB73|B8AB73_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02634 PE=4 SV=1
          Length = 408

 Score =  101 bits (251), Expect = 4e-20
 Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 9/200 (4%)
 Frame = +1

Query: 55  SEALPQ--GKVLLVEDKAANDGIYR-GEN------VNMGTIVVAEVQSRALVEGRPVLTC 207
           +EA P   G V +V   A+ +G  + GE       V  GT+V AEV  R L  GRP+L+ 
Sbjct: 126 AEAAPPRPGSVGVVASPASGEGDRKPGERGGGRTLVPPGTVVFAEVLGRTL-SGRPLLSA 184

Query: 208 RRLARSLAFVRIEQIMRTGEPIQMEINQSNDGGLQGYVEGVRAFLPRSELLRRPESSAAL 387
           RRL R LA+ R  Q                         G+RAFLP+ EL+ R  + + L
Sbjct: 185 RRLFRRLAWHRARQ-------------------------GLRAFLPKFELMDRINTFSDL 219

Query: 388 QDYIGKTLRVAILQAEEYSSNVIISEAKLWMSENLLLGTVHDLVITRLYPYGMQVEVIGT 567
           ++ +G ++RV I + +E ++++IISE K W    L  GT+   ++ +++PYG Q+ + GT
Sbjct: 220 KNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVRKIFPYGAQIRIAGT 279

Query: 568 RIRGFIHISSISRGYVTSLA 627
              G +HIS+ISRG V S++
Sbjct: 280 NRSGLLHISNISRGSVLSVS 299


>tr|A9TKV9|A9TKV9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94086 PE=4 SV=1
          Length = 600

 Score =  101 bits (251), Expect = 4e-20
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 32/232 (13%)
 Frame = +1

Query: 28  DDSSENVE--GSEALPQGKVLLVEDKAANDGIYRGEN-----VNMGTIVVAEVQSRALVE 186
           D++ E  E  G    P+G   ++ D+     +Y  E+     V++GT++  EV  + +  
Sbjct: 264 DEAGEGNERGGLGTPPRGLPYVIHDEE----VYAYESPAPHCVDIGTVLEMEVVGKTMT- 318

Query: 187 GRPVLTCRRLARSLAFVRI-----------------------EQIMRTGEPIQMEINQSN 297
           G+P+L+ R+ A+ +A+ R+                       +QI    E I++EI    
Sbjct: 319 GKPLLSARKAAQRVAWDRVLQQCDDLFCEPIFCCLTSGVSWGDQIKDEHESIEVEIVDYG 378

Query: 298 DGGLQGYVEGVRAFLPRSELLRRPESSA--ALQDYIGKTLRVAILQAEEYSSNVIISEAK 471
             G+   VEG+RAFLP +E +  P++S   + +DY+G+ L V I  A E   N++ISE  
Sbjct: 379 KAGVIARVEGLRAFLPLTEFVIPPDTSKGESHKDYVGRKLWVCISFAREIRGNIVISEKD 438

Query: 472 LWMSENLLLGTVHDLVITRLYPYGMQVEVIGTRIRGFIHISSISRGYVTSLA 627
            W+  NL LG++HD  +T++  YG  V++  T I G IHIS++S   +  ++
Sbjct: 439 AWIQRNLKLGSLHDGTVTKIVNYGAYVQINRTNIGGIIHISNMSTARINRVS 490