DK949652 |
Clone id |
TST38A01NGRL0006_J03 |
Library |
TST38 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_J03. 5' end sequence. |
Accession |
DK949652 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL615Contig1 |
Sequence |
GTGGAACTGACTTCCTTACTTGACCTTGTTCCACAGCCTTTAAGCTAGGGAGAGCTGATG AAGTAGCTCGCTGTTCAGGCTTACCCTTGGAACACAAGAATGGGGTGCTCTCTCGCATTT CTACTTCAGCAGTTGATTCAGATGTGGATTCAGGAGTCCCGAATTCAGATGTATGTCCCT GGACACAAGATACAGGCAGCTCTGACAAGCTATTGCCAGATCTCCACGAAGCTGGAAGCG TTTCTGGGAGGAGAATTGATGAGATCAGTAAACCTGTTTCTGATCCTACTCCTGAATATT TTTACAATGATAGGGGTGAGCATTATGGAGAAAGAGTCAATGGGCATCATAGAAGTGTAA GTGTGGGTAGCGGTTTGAATGCGTGGAAGAGTGGTTCAATGACTGATGGCAGAGGTAATC GACGGAGACTCATATCTGTTCAGATCCCCTCCAACAGGTTAAATTTCTGGGCCATTTTTT CCAAAGTACGCCATGCAAGGAAATTCAAAAGTGGCCTGAAAAGATGGAAAGATGGAGATA CCAATCCAAGGGACAGTGAGATGCTTTCATTATTGCAGGGAATACAAGACATTGAGCAGG GAAATCAAACTTCTTGTTTTGGAGCAAAACCAGATTGCTTAAGCAGAAGTGCCTTTGGCG A |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3YYZ8 |
Definition |
sp|Q3YYZ8|PUR4_SHISS Phosphoribosylformylglycinamidine synthase OS=Shigella sonnei (strain Ss046) |
Align length |
84 |
Score (bit) |
32.7 |
E-value |
1.7 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949652|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_J03, 5' (661 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q3YYZ8|PUR4_SHISS Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q32D15|PUR4_SHIDS Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q31XT0|PUR4_SHIBS Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q1R8H7|PUR4_ECOUT Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|P15254|PUR4_ECOLI Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q8FF26|PUR4_ECOL6 Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q0TET1|PUR4_ECOL5 Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q8XA46|PUR4_ECO57 Phosphoribosylformylglycinamidine synthase ... 33 1.7 sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-... 32 2.3 sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-... 32 3.0 sp|Q5PIG8|PUR4_SALPA Phosphoribosylformylglycinamidine synthase ... 32 3.9 sp|P74881|PUR4_SALTY Phosphoribosylformylglycinamidine synthase ... 31 5.1 sp|Q8Z4L6|PUR4_SALTI Phosphoribosylformylglycinamidine synthase ... 31 5.1 sp|Q57LE6|PUR4_SALCH Phosphoribosylformylglycinamidine synthase ... 31 5.1 sp|O88689|PCDA4_MOUSE Protocadherin alpha-4 OS=Mus musculus GN=P... 31 5.1 sp|Q7SYR6|LMBD1_XENLA Probable lysosomal cobalamin transporter O... 31 5.1 sp|P06868|PLMN_BOVIN Plasminogen OS=Bos taurus GN=PLG PE=1 SV=2 31 6.6 sp|P40967|PME17_HUMAN Melanocyte protein Pmel 17 OS=Homo sapiens... 31 6.7 sp|O96785|HUNB_CLOAL Protein hunchback (Fragment) OS=Clogmia alb... 31 6.7 sp|Q6D238|PUR4_ERWCT Phosphoribosylformylglycinamidine synthase ... 30 8.6 sp|Q5U2T6|PLAG1_RAT Zinc finger protein PLAG1 OS=Rattus norvegic... 30 8.7 sp|Q9QYE0|PLAG1_MOUSE Zinc finger protein PLAG1 OS=Mus musculus ... 30 8.7 sp|Q6DJT9|PLAG1_HUMAN Zinc finger protein PLAG1 OS=Homo sapiens ... 30 8.7 sp|P40091|PEA2_YEAST Protein PEA2 OS=Saccharomyces cerevisiae GN... 30 8.7 sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-... 30 8.7 sp|Q3TLH4|BA2D1_MOUSE BAT2 domain-containing protein 1 OS=Mus mu... 30 8.7
>sp|Q3YYZ8|PUR4_SHISS Phosphoribosylformylglycinamidine synthase OS=Shigella sonnei (strain Ss046) GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q32D15|PUR4_SHIDS Phosphoribosylformylglycinamidine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q31XT0|PUR4_SHIBS Phosphoribosylformylglycinamidine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q1R8H7|PUR4_ECOUT Phosphoribosylformylglycinamidine synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|P15254|PUR4_ECOLI Phosphoribosylformylglycinamidine synthase OS=Escherichia coli (strain K12) GN=purL PE=1 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q8FF26|PUR4_ECOL6 Phosphoribosylformylglycinamidine synthase OS=Escherichia coli O6 GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q0TET1|PUR4_ECOL5 Phosphoribosylformylglycinamidine synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q8XA46|PUR4_ECO57 Phosphoribosylformylglycinamidine synthase OS=Escherichia coli O157:H7 GN=purL PE=3 SV=3 Length = 1295
Score = 32.7 bits (73), Expect = 1.7 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = +3
Query: 177 PWTQDTGSSDKLLP--DLHEAGSVSGRRID-EISKPVSDPTPEYFYNDRGEHYGERVNGH 347 PW +D G ++++ D+ G + G + E +P + + H GE + G+ Sbjct: 348 PWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGY 407
Query: 348 HRSVSVGSGLNAWKSGSMTDGRGN 419 H+ + + G+ ++ + G N Sbjct: 408 HKPIMLAGGIGNIRADHVQKGEIN 431
>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2 Length = 1478
Score = 32.3 bits (72), Expect = 2.3 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = -1
Query: 289 VGSETGLLISSILLPETLPASW--RSGNSLSELPVSCVQGHTSEFGTPESTSESTAEVEM 116 V S + ++SS+ P + P SW R GN ELP + G TS P S+S S ++ Sbjct: 898 VRSRSSDIVSSVRRPMSDP-SWNRRPGNEERELPPAAAIGATSLVAAPHSSSSSPSKDSS 956
Query: 115 REST 104 R T Sbjct: 957 RGET 960
>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1 Length = 1413
Score = 32.0 bits (71), Expect = 3.0 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = -1
Query: 289 VGSETGLLISSILLPETLPASW--RSGNSLSELPVSCVQGHTSEFGTPESTSESTAEVEM 116 V S + ++SS+ P + P SW R GN ELP + G TS P S+S S ++ Sbjct: 878 VRSRSSDVVSSVRRPMSDP-SWNRRPGNEERELPPAAAIGATSLVAAPHSSSSSPSKDSS 936
Query: 115 REST 104 R T Sbjct: 937 RGET 940
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQV3 |
Definition |
tr|B8LQV3|B8LQV3_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
73 |
Score (bit) |
52.8 |
E-value |
2.0e-05 |
Report |
|