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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949655
Clone id TST38A01NGRL0006_J06
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_J06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGATAACGTCATCAGTCAAGGATGTGTGCAAGAAAGCTCCCACTGAACGAGTATTTTTG
GAGAAGTATGGGAAAGTGTGCCTGTGTCTTGATGAGATAGTTTTTCAGGGGACATTAGAG
CATACAGACAAAGATCGCATTCGACGATTGACTCGGCTCAAACCCCTTGCTGATTGATGA
ATCTTCAAGGAAATTGTGGATTGAGGCCCTTTAAACAGATGCAAGTTAAAAAGACCTGCA
AAACTTTTCAGATTTACAAACTCTAAAAAAGATTTCTTTTGGCCGTACACAAAACCGTTT
TATTTTTTTAGACTGCCCGGATTGGTAGAGTCAAATTTAGTACTCATTTTGGTTTTGACT
TTGTACACCTTGCCGTTTCTGATCCAAGATATATCATGCAATTGTTAAGGCTTTCCGGAT
TTGGGTACATCTATTCATCTATTTTATCCAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P27229
Definition sp|P27229|VE6_HPV42 Protein E6 OS=Human papillomavirus type 42
Align length 44
Score (bit) 33.1
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949655|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_J06, 5'
         (449 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27229|VE6_HPV42 Protein E6 OS=Human papillomavirus type 42 G...    33   0.56 
sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyo...    31   2.1  
sp|P48454|PP2BC_HUMAN Serine/threonine-protein phosphatase 2B ca...    30   3.6  
sp|Q4ZQC6|MSRB_PSEU2 Peptide methionine sulfoxide reductase msrB...    30   3.6  
sp|P76692|YZGL_ECOLI Putative uncharacterized protein yzgL OS=Es...    29   8.0  
sp|Q8N6G2|CM026_HUMAN Uncharacterized protein C13orf26 OS=Homo s...    29   8.0  

>sp|P27229|VE6_HPV42 Protein E6 OS=Human papillomavirus type 42
           GN=E6 PE=3 SV=1
          Length = 150

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = -2

Query: 154 ESIVECDLCLYALMSPEKLSHQDTGTLSHTSPKILVQWELSCTH 23
           E  + C LC   L   EK  H DTGT       IL QW   CTH
Sbjct: 99  EQQIRCALCQKPLSQSEKNHHIDTGTRFQF---ILCQWTGRCTH 139


>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B
           OS=Dictyostelium discoideum GN=copzb PE=3 SV=1
          Length = 178

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +1

Query: 43  TERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKPLAD 174
           T++ FLE Y  + L +DEIV  G +   D++ I  L R+ P+AD
Sbjct: 113 TKKTFLENYALIRLYIDEIVSDGIIFEVDEETI--LNRV-PIAD 153


>sp|P48454|PP2BC_HUMAN Serine/threonine-protein phosphatase 2B
           catalytic subunit gamma isoform OS=Homo sapiens
           GN=PPP3CC PE=2 SV=2
          Length = 502

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 188 LKIHQSARGLSRVNRRM--RSLSVCSNVP*KTISSRHRH 78
           ++  + ARGL R+N RM  R  S+ +  P K+++S H H
Sbjct: 451 IRSFEEARGLDRINERMPPRKDSIHAGGPMKSVTSAHSH 489


>sp|Q4ZQC6|MSRB_PSEU2 Peptide methionine sulfoxide reductase msrB
           OS=Pseudomonas syringae pv. syringae (strain B728a)
           GN=msrB PE=3 SV=1
          Length = 131

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
 Frame = +1

Query: 22  DVCKKAPTERVFLEKYGKV-------CLCLDEIVFQGT 114
           +VC+   TER F  KY KV       C+C DE +F  T
Sbjct: 21  NVCRLKGTERPFSGKYDKVKTDGIYHCICCDEPLFDST 58


>sp|P76692|YZGL_ECOLI Putative uncharacterized protein yzgL
           OS=Escherichia coli (strain K12) GN=yzgL PE=5 SV=2
          Length = 93

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 252 IYKL*KRFLLAVHKTVLFF*TARIGRVKFSTHFGFDFVHLAV 377
           IY L K F+LA+   +LFF + R+G V    + G+D V  AV
Sbjct: 51  IYLLLKIFMLALGALMLFF-SGRVGNVPEFCYVGYDGVGFAV 91


>sp|Q8N6G2|CM026_HUMAN Uncharacterized protein C13orf26 OS=Homo
           sapiens GN=C13orf26 PE=2 SV=1
          Length = 289

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 389 SWIRNGKVYKVKTKMSTKFDSTNPGSLKK*NGFVYGQKKSFLEFVNLK 246
           S++RN +  K +T   + +D T P  L   N F   Q K +L+ ++ K
Sbjct: 222 SYLRNQEHTKKQTTYQSDYDKTYPDFLMLLNSFTSSQVKEYLQSLSYK 269
tr_hit_id A9RE27
Definition tr|A9RE27|A9RE27_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 103.0
E-value 4.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949655|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_J06, 5'
         (449 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RE27|A9RE27_PHYPA Predicted protein OS=Physcomitrella paten...   103   4e-21
tr|A7QIQ0|A7QIQ0_VITVI Chromosome chr9 scaffold_104, whole genom...    95   2e-18
tr|A9P8V7|A9P8V7_POPTR Putative uncharacterized protein OS=Popul...    93   6e-18
tr|Q9XI32|Q9XI32_ARATH F9L1.32 protein (Putative uncharacterized...    92   1e-17
tr|B4FEL3|B4FEL3_MAIZE Putative uncharacterized protein OS=Zea m...    91   2e-17
tr|Q75IP8|Q75IP8_ORYSJ Putative chloroplastic RNA-binding protei...    91   3e-17
tr|B8ANR6|B8ANR6_ORYSI Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|A2XP92|A2XP92_ORYSI Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|Q2HUA7|Q2HUA7_MEDTR Longin-like OS=Medicago truncatula GN=Mtr...    88   2e-16
tr|Q700A4|Q700A4_CICAR Putative uncharacterized protein (Fragmen...    87   5e-16
tr|A8JHN4|A8JHN4_CHLRE Zeta2-COP OS=Chlamydomonas reinhardtii GN...    51   3e-05
tr|B0G0Z3|B0G0Z3_DICDI WD40 repeat-containing protein OS=Dictyos...    33   7.2  

>tr|A9RE27|A9RE27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_174107 PE=4 SV=1
          Length = 146

 Score =  103 bits (257), Expect = 4e-21
 Identities = 47/57 (82%), Positives = 54/57 (94%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKPLAD 174
           +TSSVK+VC+K P+ER+FLEKYGKVCLCLDEI+ QG LEHTDKDRIRRLTRLKPLA+
Sbjct: 90  VTSSVKEVCRKDPSERLFLEKYGKVCLCLDEIISQGALEHTDKDRIRRLTRLKPLAE 146


>tr|A7QIQ0|A7QIQ0_VITVI Chromosome chr9 scaffold_104, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000350001
           PE=4 SV=1
          Length = 147

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 44/55 (80%), Positives = 50/55 (90%)
 Frame = +1

Query: 1   VITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           VI SSVKDVC K PTER+FL+KYGK+CLCLDEIV++G LE+ DKDRIRRLTRLKP
Sbjct: 89  VIISSVKDVCGKPPTERLFLDKYGKICLCLDEIVWKGMLENADKDRIRRLTRLKP 143


>tr|A9P8V7|A9P8V7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 147

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 41/54 (75%), Positives = 51/54 (94%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS++KDVC K PTER+FL+KYGK+CLCLDEIV++G LE+TDK+R+RRLTRLKP
Sbjct: 90  ITSALKDVCGKPPTERLFLDKYGKICLCLDEIVWKGLLENTDKERVRRLTRLKP 143


>tr|Q9XI32|Q9XI32_ARATH F9L1.32 protein (Putative uncharacterized
           protein At1g15370/F9L1_32) (Putative uncharacterized
           protein At1g15370) OS=Arabidopsis thaliana
           GN=At1g15370/F9L1_32 PE=2 SV=1
          Length = 147

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 41/55 (74%), Positives = 50/55 (90%)
 Frame = +1

Query: 1   VITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           +IT++VKDVC K PTERVFL+KYG++CLCLDEIV+ G LE+TDKDRI+RL RLKP
Sbjct: 89  IITAAVKDVCGKPPTERVFLDKYGRICLCLDEIVWNGLLENTDKDRIKRLIRLKP 143


>tr|B4FEL3|B4FEL3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 147

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 40/54 (74%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS+VKDVC K PTER+FL+KYG++CLCLDEIV++G LE+T+KDR+RRL RLKP
Sbjct: 90  ITSAVKDVCAKPPTERLFLDKYGRICLCLDEIVWKGLLENTEKDRVRRLIRLKP 143


>tr|Q75IP8|Q75IP8_ORYSJ Putative chloroplastic RNA-binding protein,
           with alternative splicing isoforms (Putative
           uncharacterized protein) (Pentatricopeptide, putative,
           expressed) OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g63910 PE=4 SV=1
          Length = 884

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/54 (74%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS+VKDVC K PTER+FL+KYG++CLCLDEIV++G LE+T+KDR+RRL RLKP
Sbjct: 827 ITSAVKDVCGKPPTERLFLDKYGRICLCLDEIVWKGLLENTEKDRVRRLIRLKP 880


>tr|B8ANR6|B8ANR6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14395 PE=4 SV=1
          Length = 147

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/54 (74%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS+VKDVC K PTER+FL+KYG++CLCLDEIV++G LE+T+KDR+RRL RLKP
Sbjct: 90  ITSAVKDVCGKPPTERLFLDKYGRICLCLDEIVWKGLLENTEKDRVRRLIRLKP 143


>tr|A2XP92|A2XP92_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14398 PE=4 SV=1
          Length = 119

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/54 (74%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS+VKDVC K PTER+FL+KYG++CLCLDEIV++G LE+T+KDR+RRL RLKP
Sbjct: 62  ITSAVKDVCGKPPTERLFLDKYGRICLCLDEIVWKGLLENTEKDRVRRLIRLKP 115


>tr|Q2HUA7|Q2HUA7_MEDTR Longin-like OS=Medicago truncatula
           GN=MtrDRAFT_AC149206g17v2 PE=4 SV=1
          Length = 147

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 40/54 (74%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS+VKDVC K PTER FL+KYG++CLCLDEIV++G LE+T+KDRI+RL RLKP
Sbjct: 90  ITSAVKDVCGKPPTERRFLDKYGRICLCLDEIVWKGYLENTEKDRIKRLIRLKP 143


>tr|Q700A4|Q700A4_CICAR Putative uncharacterized protein (Fragment)
           OS=Cicer arietinum PE=2 SV=1
          Length = 139

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 39/54 (72%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   ITSSVKDVCKKAPTERVFLEKYGKVCLCLDEIVFQGTLEHTDKDRIRRLTRLKP 165
           ITS+VKDVC K PTER FL+KYG++CLCLDEIV++G LE+T+K+RI+RL RLKP
Sbjct: 82  ITSAVKDVCGKPPTERRFLDKYGRICLCLDEIVWKGYLENTEKERIKRLIRLKP 135