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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949664
Clone id TST38A01NGRL0006_J15
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_J15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TTTGGAAATAGCTTTGCTACGCTTAGTGGGCGACTCGTTGAAAATACAAATTTTTGCCCG
TGAAAGAAAAGACGCTAAATGAAAGTGAAAGTTAAACCCATCCTTTTGTTGATCAGTATT
CAATAGACAAGCCCTGAATGCACGGGAAAATTAAAACTTCTTTCACGACACAAACTTTCT
TTCTCTTTCCATCCGTAGAAAATTTTTCTATGGAAAAGCCGGAATCAGGAAGCACTGTAA
TAGTAGTTCAACGGAAATTTGAGGAACTAAGATATCTCAGATTTTTTCCTCGCGAACTAG
TCCTATGGTTAATTGTCTAACTCTTAAAATATTACGTAATGTAGGATGACTACTAAAAGT
CAGGGGAGAGCTTTGAGTCGACTAATACTGGGAACGCCGACTCAATAAAACTGAGATAGA
ATGGAGTACGTACAGCTTCGTTGTCGAAAGAGAGAACCTAAACGTCTGCTCAAAAAGATT
GAAACAACGAGCAAACTTCCGAATCTGATTCAACAGTGAATAGTGAGATCTGGTAGTTGG
GATGGCGAGGGAAGCTGACAGTTTTTTCTTTGGATCTGACAAGAAAAAAAAAAGTAAAGC
TCACTCT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949664|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_J15, 5'
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id B0ABM1
Definition tr|B0ABM1|B0ABM1_9CLOT Putative uncharacterized protein OS=Clostridium bartlettii DSM 16795
Align length 117
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949664|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_J15, 5'
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0ABM1|B0ABM1_9CLOT Putative uncharacterized protein OS=Clost...    35   2.6  
tr|Q4DKM0|Q4DKM0_TRYCR Retrotransposon hot spot (RHS) protein, p...    34   5.8  
tr|Q4DJA5|Q4DJA5_TRYCR Retrotransposon hot spot (RHS) protein, p...    34   5.8  
tr|Q4D5F9|Q4D5F9_TRYCR Retrotransposon hot spot (RHS) protein, p...    34   5.8  
tr|Q4D3Z2|Q4D3Z2_TRYCR Retrotransposon hot spot (RHS) protein, p...    34   7.5  
tr|Q4CKR2|Q4CKR2_TRYCR Retrotransposon hot spot (RHS) protein, p...    34   7.5  

>tr|B0ABM1|B0ABM1_9CLOT Putative uncharacterized protein
           OS=Clostridium bartlettii DSM 16795 GN=CLOBAR_01771 PE=4
           SV=1
          Length = 539

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
 Frame = -1

Query: 451 SFDNEAVRTPFYLSFIESAFP------VLVDSKLSPDF**SSYIT*YFKS*TINHRTSSR 290
           +FDNE V  P + + I+  +        L+D     DF   SY   Y ++     R  +R
Sbjct: 302 NFDNEIVTLPVFFTKIDGVYRDLDEYYCLLDKLQIKDF---SYFIDYDENIRPLSRPFTR 358

Query: 289 -GKNLRYLSSSNFR*TTITVLPDSGFSIEKFSTDGKRKKVCVVKEVLIFPC-IQGLS 125
            G NL +  S+ F+     ++ D GFSI   S   +   +  V+E ++    I+GLS
Sbjct: 359 EGYNLSFYISNTFKINQKAIIKDGGFSISNLSLKWQETILSKVEETILSDMFIEGLS 415


>tr|Q4DKM0|Q4DKM0_TRYCR Retrotransposon hot spot (RHS) protein,
            putative OS=Trypanosoma cruzi GN=Tc00.1047053506843.40
            PE=4 SV=1
          Length = 974

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -2

Query: 591  FFFLSDPKKKLSASLAIPTTRSHYSLLNQIRKFARC----FNLFEQTFRFSLSTTKLYVL 424
            FFF+  P+K L   L + T   H+++ + +R+F  C    F  +E+  R  +S   +YV 
Sbjct: 866  FFFVDSPRKTL-VGLRMTTAGGHHTITSTVRQFTECLAEYFEGWEELSR-EMSWEMIYVQ 923

Query: 423  HSISVLL 403
            H  S ++
Sbjct: 924  HENSTMI 930


>tr|Q4DJA5|Q4DJA5_TRYCR Retrotransposon hot spot (RHS) protein,
           putative (Fragment) OS=Trypanosoma cruzi
           GN=Tc00.1047053506675.110 PE=4 SV=1
          Length = 306

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 588 FFLSDPKKKLSASLAIPTTRSHYSLLNQIRKFARC----FNLFEQTFRFSLSTTKLYVLH 421
           FF SD   K    L + T   H++  + +R+F  C    FN +E+ F   LS   +YV H
Sbjct: 199 FFFSDSNPKTLVGLRMTTAGGHHTTTSTVRQFTECLAAYFNGWEE-FSEGLSWEMIYVQH 257

Query: 420 SIS 412
           + S
Sbjct: 258 ADS 260


>tr|Q4D5F9|Q4D5F9_TRYCR Retrotransposon hot spot (RHS) protein,
           putative (Fragment) OS=Trypanosoma cruzi
           GN=Tc00.1047053508071.90 PE=4 SV=1
          Length = 553

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 588 FFLSDPKKKLSASLAIPTTRSHYSLLNQIRKFARC----FNLFEQTFRFSLSTTKLYVLH 421
           FF SD   K    L + T   H++  + +R+F  C    FN +E+ F   LS   +YV H
Sbjct: 441 FFFSDSNPKTLVGLRMATAGEHHTTTSTVRQFTECLAAYFNGWEE-FSEGLSWEMIYVQH 499

Query: 420 SIS 412
           + S
Sbjct: 500 AES 502


>tr|Q4D3Z2|Q4D3Z2_TRYCR Retrotransposon hot spot (RHS) protein,
           putative OS=Trypanosoma cruzi GN=Tc00.1047053508589.30
           PE=4 SV=1
          Length = 822

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 591 FFFLSDPKKKLSASLAIPTTRSHYSLLNQIRKFARC----FNLFEQTFRFSLSTTKLYVL 424
           FFF+  P+K L   L + T   H++  + +R+F  C    FN +E+  R  +S   +YV 
Sbjct: 728 FFFIESPQKTL-VGLRMATAGGHHTTTSTVRQFTECLAAYFNGWEELSR-EMSWEMIYVQ 785

Query: 423 HSIS 412
           H  S
Sbjct: 786 HENS 789


>tr|Q4CKR2|Q4CKR2_TRYCR Retrotransposon hot spot (RHS) protein,
           putative (Fragment) OS=Trypanosoma cruzi
           GN=Tc00.1047053412509.10 PE=4 SV=1
          Length = 321

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 591 FFFLSDPKKKLSASLAIPTTRSHYSLLNQIRKFARC----FNLFEQTFRFSLSTTKLYVL 424
           FFF+  P+K L   L + T   H++  + +R+F  C    FN +E+  R  +S   +YV 
Sbjct: 227 FFFIESPQKTL-VGLRMATAGGHHTTTSTVRQFTECLAAYFNGWEELSR-EMSWEMIYVQ 284

Query: 423 HSIS 412
           H  S
Sbjct: 285 HENS 288