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NBDC - LSDB Archive
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DK949672
Clone id TST38A01NGRL0006_J23
Library
Length 642
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_J23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ACTCTATGCAGAAGGTTCAAAATCGAATGTTGAAAGCTGCTCTCATGGTAGCTGACACTT
CCTCTCGTTCGGCGCGGTGAGGAACGTGACGTCTTCTGCGCTGATTGTCTTGCAGACACA
GACCAGGTTTTGGTTATGGCTTTGGAGTTTGTCAGCCCAGAAGGACTTCGTTTAGATGGC
CGCCGTCCAACTGAGATGCGTCAATTACGGGCAAAATTAGGCGTCGTGGATAAAGCGGAC
GGGTCGGCCACATTTGAGATGGGCAACACGAAGGTGATTGCAGCTGTTTATGGACCTCAT
GAGGTGCAAAATAGGGGCCAGCAGCTTTTTGATCAAGCTTTGGTAAGATGTGAATATAGC
ATGGCAAATTTCAGCACTGGTGACCGCAGGAGGAAACAAAAGGGAGACCGACGCTCTGTC
GAGATTTCACTCGTAATCCGTCAAAGCATGGAGGCTGCAATCTTGACAAATCTCATGCCC
CGCACACAGATTGATATATTTGTGCATGTACTTCAAGCTGATGGAGGAACTCGATCTGCT
TGCATAAATGCAGCATCCCTTGCATTGGCAGATGCAGGCATCCCAATGCGGGACATTGTA
GCATCCTGTGCTTCAGGCTACCTCAATAACACTCCTTTGCTA
■■Homology search results ■■ -
sp_hit_id Q921I9
Definition sp|Q921I9|EXOS4_MOUSE Exosome complex exonuclease RRP41 OS=Mus musculus
Align length 167
Score (bit) 182.0
E-value 1.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949672|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_J23, 5'
         (642 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q921I9|EXOS4_MOUSE Exosome complex exonuclease RRP41 OS=Mus m...   182   1e-45
sp|Q9NPD3|EXOS4_HUMAN Exosome complex exonuclease RRP41 OS=Homo ...   182   2e-45
sp|Q7YRA3|EXOS4_BOVIN Exosome complex exonuclease RRP41 OS=Bos t...   182   2e-45
sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=S...   159   1e-38
sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=M...   159   1e-38
sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=S...   154   3e-37
sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=S...   154   3e-37
sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=P...   153   8e-37
sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=P...   152   1e-36
sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=P...   152   1e-36
sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=M...   150   7e-36
sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=P...   149   9e-36
sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=P...   142   2e-33
sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex exonuclease RRP41...   141   3e-33
sp|Q17533|EXOS4_CAEEL Putative exosome complex exonuclease RRP41...   140   4e-33
sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=A...   140   4e-33
sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=A...   140   4e-33
sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=M...   139   1e-32
sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=T...   135   2e-31
sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=T...   134   4e-31
sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosa...   121   4e-27
sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharo...   110   5e-24
sp|Q6P0I8|EXOS6_DANRE Exosome complex exonuclease MTR3 OS=Danio ...    94   6e-19
sp|Q28F19|EXOS6_XENTR Exosome complex exonuclease MTR3 OS=Xenopu...    82   3e-15
sp|Q8BTW3|EXOS6_MOUSE Exosome complex exonuclease MTR3 OS=Mus mu...    80   1e-14
sp|Q5RKV6|EXOS6_HUMAN Exosome complex exonuclease MTR3 OS=Homo s...    76   1e-13
sp|Q9NQT4|EXOS5_HUMAN Exosome complex exonuclease RRP46 OS=Homo ...    72   2e-12
sp|Q2S8P0|RNPH_HAHCH Ribonuclease PH OS=Hahella chejuensis (stra...    70   7e-12
sp|Q9CRA8|EXOS5_MOUSE Exosome complex exonuclease RRP46 OS=Mus m...    70   9e-12
sp|A1T097|RNPH_PSYIN Ribonuclease PH OS=Psychromonas ingrahamii ...    70   1e-11

>sp|Q921I9|EXOS4_MOUSE Exosome complex exonuclease RRP41 OS=Mus
           musculus GN=Exosc4 PE=2 SV=3
          Length = 245

 Score =  182 bits (462), Expect = 1e-45
 Identities = 91/167 (54%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQ-NRG 318
           LE +S +G R+DGRR  E+R+++A++GV  +ADGSA  E GNTK +A VYGPHE++ +R 
Sbjct: 4   LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63

Query: 319 QQLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDI 498
           + L D+ALV C+YS A FST            S E+ L +RQ+ EAAILT L PR+QIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 499 FVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPL 639
           +V VLQADGGT +AC+NAA+LA+ DAGIPMRD V +C++G+++ T L
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTAL 170


>sp|Q9NPD3|EXOS4_HUMAN Exosome complex exonuclease RRP41 OS=Homo
           sapiens GN=EXOSC4 PE=1 SV=3
          Length = 245

 Score =  182 bits (461), Expect = 2e-45
 Identities = 91/167 (54%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQ-NRG 318
           LE +S +G R+DGRR  E+R+++A++GV  +ADGSA  E GNTK +A VYGPHE++ +R 
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 319 QQLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDI 498
           + L D+ALV C+YS A FST            S E+ L +RQ+ EAAILT L PR+QIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 499 FVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPL 639
           +V VLQADGGT +AC+NAA+LA+ DAGIPMRD V +C++G+++ T L
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTAL 170


>sp|Q7YRA3|EXOS4_BOVIN Exosome complex exonuclease RRP41 OS=Bos
           taurus GN=EXOSC4 PE=2 SV=3
          Length = 245

 Score =  182 bits (461), Expect = 2e-45
 Identities = 91/167 (54%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQ-NRG 318
           LE +S +G R+DGRR  E+R+++A++GV  +ADGSA  E GNTK +A VYGPHE++ +R 
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 319 QQLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDI 498
           + L D+ALV C+YS A FST            S E+ L +RQ+ EAAILT L PR+QIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 499 FVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPL 639
           +V VLQADGGT +AC+NAA+LA+ DAGIPMRD V +C++G+++ T L
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTAL 170


>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1
           OS=Sulfolobus tokodaii GN=ST0443 PE=3 SV=1
          Length = 247

 Score =  159 bits (402), Expect = 1e-38
 Identities = 85/152 (55%), Positives = 106/152 (69%)
 Frame = +1

Query: 163 GLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQQLFDQAL 342
           GLRLDGR+P EMR ++ +LGV+  ADGSA FEMGNTKVIAAVYGP E+  R   L D+A+
Sbjct: 18  GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 77

Query: 343 VRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIFVHVLQAD 522
           +R  Y M  FST             +E+S VIR+++E+ IL  L PRT ID+F+ VLQAD
Sbjct: 78  LRVRYHMTPFST-DERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 136

Query: 523 GGTRSACINAASLALADAGIPMRDIVASCASG 618
            GTR   + AAS+ALADAGIPMRD++A  A G
Sbjct: 137 AGTRLVSLMAASMALADAGIPMRDLIAGVAVG 168


>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1
           OS=Methanopyrus kandleri GN=MK0381 PE=3 SV=1
          Length = 239

 Score =  159 bits (402), Expect = 1e-38
 Identities = 86/164 (52%), Positives = 114/164 (69%)
 Frame = +1

Query: 151 VSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQQLF 330
           +S +GLRLDGR+P EMR L+ + GV+ +ADGSA  E+G  K++AAVYGP E+  R +Q  
Sbjct: 9   ISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKP 68

Query: 331 DQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIFVHV 510
           D+A+VR  Y+MA FS             S+EIS + ++++E AI T   PRT IDIFV V
Sbjct: 69  DRAVVRFRYNMAPFSVDERKRPGPDRR-SIEISKLSKEALEPAIFTEYYPRTAIDIFVEV 127

Query: 511 LQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           LQAD GTR A I+AAS+ALADAGI MRD+VA+CA+G +    +L
Sbjct: 128 LQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVL 171


>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1
           OS=Sulfolobus solfataricus GN=SSO0735 PE=1 SV=1
          Length = 248

 Score =  154 bits (390), Expect = 3e-37
 Identities = 81/166 (48%), Positives = 109/166 (65%)
 Frame = +1

Query: 145 EFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQQ 324
           + +  +G R DGR+P E+R ++ +LGV+  ADGSA FEMGNTK IAAVYGP E+  R   
Sbjct: 11  KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLS 70

Query: 325 LFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIFV 504
           L D+A++R  Y M  FST             +E+S VIR+++E+A+L  L PRT ID+F 
Sbjct: 71  LPDRAVLRVRYHMTPFST-DERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFT 129

Query: 505 HVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
            +LQAD G+R   + AASLALADAGIPMRD++A  A G  +   +L
Sbjct: 130 EILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIIL 175


>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1
           OS=Sulfolobus acidocaldarius GN=Saci_0610 PE=3 SV=1
          Length = 243

 Score =  154 bits (390), Expect = 3e-37
 Identities = 85/166 (51%), Positives = 110/166 (66%)
 Frame = +1

Query: 145 EFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQQ 324
           + +   GLR DGR+  E+R ++ +LGV+  ADGSA FEMGNTKVIAAVYGP E+  R   
Sbjct: 8   KLILENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLA 67

Query: 325 LFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIFV 504
           L D+A +R  Y M  FST             +E+S VIR+++E+ IL NL PRT IDIF+
Sbjct: 68  LPDKASLRVRYHMTPFSTDERKNPAPSRR-EIELSKVIREALESTILLNLFPRTVIDIFM 126

Query: 505 HVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
            VLQAD GTR   + AAS+ALADAGIPMRD++A  A G  + + +L
Sbjct: 127 EVLQADAGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVL 172


>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1
           OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1
          Length = 249

 Score =  153 bits (386), Expect = 8e-37
 Identities = 81/167 (48%), Positives = 113/167 (67%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           L+ +   G R+DGR+  E+R ++ ++GV+  ADGSA  E G  KV+AAVYGP E+  +  
Sbjct: 8   LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67

Query: 322 QLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIF 501
           Q  D+A++R  Y+MA FS             SVEIS VIR ++E A+L ++ PRT ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEERKKPGPDRR-SVEISKVIRGALEPALLLHMFPRTAIDVF 126

Query: 502 VHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           + +LQAD GTR A I AASLALADAGIPM+D+VA+CA+G ++   +L
Sbjct: 127 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVL 173


>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1
           OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1
          Length = 249

 Score =  152 bits (385), Expect = 1e-36
 Identities = 80/167 (47%), Positives = 112/167 (67%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           L+ +   G R+DGR+  E+R ++ K+GV+  A+GSA  E G  K+IAAVYGP E+ ++  
Sbjct: 8   LKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHL 67

Query: 322 QLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIF 501
           Q  D+A++R  Y+MA FS             S+EIS VI+ ++E A++  + PRT ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEERKKPGPDRR-SIEISKVIKGALEPALILEMFPRTSIDVF 126

Query: 502 VHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           + VLQAD GTR A I AASLALADAGIPMRD+VA+CA+G +    +L
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVL 173


>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1
           OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1
          Length = 250

 Score =  152 bits (385), Expect = 1e-36
 Identities = 81/167 (48%), Positives = 111/167 (66%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           L+ +   G RLDGR+  E+R ++ K+GV+  A+GSA  E G  K+IAAVYGP E+  +  
Sbjct: 8   LKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHL 67

Query: 322 QLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIF 501
           Q  D+A++R  Y+MA FS             S+EIS VIR ++E A++  + PRT ID+F
Sbjct: 68  QRPDRAILRVRYNMAPFSVEERKKPGPDRR-SIEISKVIRGALEPALILEMFPRTAIDVF 126

Query: 502 VHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           + VLQAD GTR A I AASLALADAGIPMRD+VA+C++G +    +L
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVL 173
tr_hit_id A9PK13
Definition tr|A9PK13|A9PK13_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 167
Score (bit) 254.0
E-value 2.0e-66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949672|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_J23, 5'
         (642 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PK13|A9PK13_POPJC Putative uncharacterized protein OS=Popul...   254   2e-66
tr|A5BIU1|A5BIU1_VITVI Putative uncharacterized protein (Chromos...   253   5e-66
tr|A9TY02|A9TY02_PHYPA Predicted protein OS=Physcomitrella paten...   237   5e-61
tr|B8BDD9|B8BDD9_ORYSI Putative uncharacterized protein OS=Oryza...   228   3e-58
tr|Q9SP08|Q9SP08_ARATH Exonuclease RRP41 OS=Arabidopsis thaliana...   224   3e-57
tr|B4FDA8|B4FDA8_MAIZE Putative uncharacterized protein OS=Zea m...   224   3e-57
tr|B6T763|B6T763_MAIZE Exosome complex exonuclease RRP41 OS=Zea ...   224   5e-57
tr|A8J275|A8J275_CHLRE 3'-5' exoribonuclease PH component of the...   202   2e-50
tr|B5X813|B5X813_SALSA Exosome complex exonuclease RRP41 OS=Salm...   187   5e-46
tr|Q6PBZ8|Q6PBZ8_DANRE Exosc4 protein (Exosome complex exonuclea...   187   6e-46
tr|A7S1D9|A7S1D9_NEMVE Predicted protein OS=Nematostella vectens...   187   6e-46
tr|Q542B0|Q542B0_MOUSE Putative uncharacterized protein OS=Mus m...   182   2e-44
tr|B7P8R1|B7P8R1_IXOSC Exosomal 3'-5' exoribonuclease complex, s...   180   8e-44
tr|Q5PQ94|Q5PQ94_XENLA LOC495942 protein OS=Xenopus laevis GN=LO...   179   1e-43
tr|B6M505|B6M505_BRAFL Putative uncharacterized protein OS=Branc...   179   1e-43
tr|B6LWQ9|B6LWQ9_BRAFL Putative uncharacterized protein OS=Branc...   179   1e-43
tr|Q6K293|Q6K293_ORYSJ Putative exosome component 4 OS=Oryza sat...   178   2e-43
tr|Q28H58|Q28H58_XENTR Exosome component 4 (LOC549190 protein) O...   177   5e-43
tr|B3RL48|B3RL48_TRIAD Putative uncharacterized protein OS=Trich...   168   3e-40
tr|Q54EU6|Q54EU6_DICDI Putative uncharacterized protein OS=Dicty...   163   7e-39
tr|A3DMU9|A3DMU9_STAMF Ribosomal RNA-processing protein RRP41/SK...   160   8e-38
tr|Q4SLK0|Q4SLK0_TETNG Chromosome 15 SCAF14556, whole genome sho...   158   3e-37
tr|A8A8Z2|A8A8Z2_IGNH4 Ribosomal RNA-processing protein RRP41/SK...   156   9e-37
tr|Q0J367|Q0J367_ORYSJ Os09g0252000 protein OS=Oryza sativa subs...   154   3e-36
tr|A0B8W3|A0B8W3_METTP Ribosomal RNA-processing protein RRP41/SK...   154   3e-36
tr|Q16KB4|Q16KB4_AEDAE Exosome complex exonuclease RRP41, putati...   154   4e-36
tr|B0XII7|B0XII7_CULQU Exosome complex exonuclease RRP41 OS=Cule...   154   6e-36
tr|A8PTK4|A8PTK4_BRUMA Putative exosome complex exonuclease RRP4...   154   6e-36
tr|B5IEJ8|B5IEJ8_9EURY Exosome complex exonuclease 1 OS=Acidulip...   153   8e-36
tr|B6YSI2|B6YSI2_THEON 3'-5' exoribonuclease OS=Thermococcus onn...   153   1e-35

>tr|A9PK13|A9PK13_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 241

 Score =  254 bits (650), Expect = 2e-66
 Identities = 129/167 (77%), Positives = 143/167 (85%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           +EFV+PEGLRLDGRRP EMRQLRA++G V KADGSA FEMGNTKVIAAVYGP EVQNR Q
Sbjct: 1   MEFVNPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 322 QLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIF 501
           Q+ DQALVRCEYSMANFST            S EISLVIRQ+ME  ILTNLMPR+QIDI+
Sbjct: 61  QINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIY 120

Query: 502 VHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           V VLQADGGTRSACINAA+LALADAGIPMRD+V SC++G+LN+TPLL
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLL 167


>tr|A5BIU1|A5BIU1_VITVI Putative uncharacterized protein (Chromosome
           chr15 scaffold_40, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00026977001 PE=4 SV=1
          Length = 241

 Score =  253 bits (647), Expect = 5e-66
 Identities = 128/167 (76%), Positives = 143/167 (85%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           +EFVSPEGLRLDGRRP EMRQ+R ++G V KADGSA FEMGNTKVIAAVYGP EV+NR Q
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 322 QLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIF 501
           Q+ DQALVRCEY+MANFST            S EISLVIRQ+MEA ILT+LMPR+QIDIF
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 502 VHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           V VLQADGGTRSACINAA+LALADAGIPMRD+V SC++GYLN+TPLL
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLL 167


>tr|A9TY02|A9TY02_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_110596 PE=4 SV=1
          Length = 246

 Score =  237 bits (604), Expect = 5e-61
 Identities = 119/169 (70%), Positives = 138/169 (81%)
 Frame = +1

Query: 136 MALEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNR 315
           MA EFVSPEGLRLDGRRP EMR L A +GVV  ADGSA F MGNT+V+A VYGPHEV N+
Sbjct: 1   MATEFVSPEGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNK 60

Query: 316 GQQLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQID 495
             QL D+ALVRCEYSMA FST            + E+SLVI Q++EAAI+T+L+PR+QID
Sbjct: 61  AHQLHDKALVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQID 120

Query: 496 IFVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           I+V VLQADGGTR+ACINAAS+ALADAGIPMRD+V SCA+GYLN+TPLL
Sbjct: 121 IYVQVLQADGGTRAACINAASMALADAGIPMRDLVVSCAAGYLNSTPLL 169


>tr|B8BDD9|B8BDD9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30553 PE=4 SV=1
          Length = 242

 Score =  228 bits (580), Expect = 3e-58
 Identities = 119/169 (70%), Positives = 141/169 (83%), Gaps = 2/169 (1%)
 Frame = +1

Query: 142 LEFVSP-EGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRG 318
           +E+V+P  G R+DGRRP EMRQL+ ++GVV +ADGSA FEMGNT+VIAAVYGP EVQN+G
Sbjct: 1   MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG 60

Query: 319 QQLFDQ-ALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQID 495
           QQ+  + ALVRCEY MA+FST            S EISLVIRQ+MEA+ILT+LMPR+QID
Sbjct: 61  QQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID 120

Query: 496 IFVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           IFV VLQADGGTR+ACINAA+LALADAGIPMRDIV SC++GYL +TPLL
Sbjct: 121 IFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLL 169


>tr|Q9SP08|Q9SP08_ARATH Exonuclease RRP41 OS=Arabidopsis thaliana
           GN=RRP41 PE=2 SV=1
          Length = 241

 Score =  224 bits (572), Expect = 3e-57
 Identities = 118/168 (70%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           +E+V+PEGLRLDGRR  EMRQ+ A++GVV KADGSA FEMGNTKVIAAVYGP E+QN+ Q
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 322 QLF-DQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDI 498
           Q   D A+V CEYSMA FST            S E+SLVIRQ+MEA ILT LMP +QIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDRRRQKFDRR-STELSLVIRQTMEACILTELMPHSQIDI 119

Query: 499 FVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           F+ VLQADGGTRSACINAA+LALADAGIPMRD+  SC++GYLN+TPLL
Sbjct: 120 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLL 167


>tr|B4FDA8|B4FDA8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 242

 Score =  224 bits (571), Expect = 3e-57
 Identities = 117/169 (69%), Positives = 138/169 (81%), Gaps = 2/169 (1%)
 Frame = +1

Query: 142 LEFVSP-EGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRG 318
           +E+V+P  G R+DGRRP EMRQL+ ++GVV +ADGSA FEMGNT+VIAAVYGP EVQN+G
Sbjct: 1   MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG 60

Query: 319 QQLFD-QALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQID 495
           QQ+   +ALVRCEY MA FST            S EISLVIRQ+MEA+ILT+LMP +QID
Sbjct: 61  QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120

Query: 496 IFVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           I+V VLQADGGTRSACINAA+LALADAGIPMRDI  SC++GYL +TPLL
Sbjct: 121 IYVQVLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLL 169


>tr|B6T763|B6T763_MAIZE Exosome complex exonuclease RRP41 OS=Zea
           mays PE=2 SV=1
          Length = 242

 Score =  224 bits (570), Expect = 5e-57
 Identities = 117/169 (69%), Positives = 138/169 (81%), Gaps = 2/169 (1%)
 Frame = +1

Query: 142 LEFVSP-EGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRG 318
           +E+V+P  G R+DGRRP EMRQL+ ++GVV +ADGSA FEMGNT+VIAAVYGP EVQN+G
Sbjct: 1   MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKG 60

Query: 319 QQLFD-QALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQID 495
           QQ+   +ALVRCEY MA FST            S EISLVIRQ+MEA+ILT+LMP +QID
Sbjct: 61  QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQID 120

Query: 496 IFVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           I+V VLQADGGTRSACINAA+LALADAGIPMRDI  SC++GYL +TPLL
Sbjct: 121 IYVQVLQADGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLL 169


>tr|A8J275|A8J275_CHLRE 3'-5' exoribonuclease PH component of the
           exosome OS=Chlamydomonas reinhardtii GN=RNPH1 PE=4 SV=1
          Length = 245

 Score =  202 bits (513), Expect = 2e-50
 Identities = 101/167 (60%), Positives = 126/167 (75%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQNRGQ 321
           +EFVSPEGLRLDGRRP E+R++  +L V+  ADGSA FEMGNTKV+AAV+GPH V  R +
Sbjct: 1   MEFVSPEGLRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSE 60

Query: 322 QLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDIF 501
              + ALV CEYSMA FST            S E+S+VIR ++E A++T L+PR+QID++
Sbjct: 61  LREEGALVVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVY 120

Query: 502 VHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPLL 642
           V VLQADGGTR A INAA LALA AG+P+RD+VA CA+GYL+ T LL
Sbjct: 121 VQVLQADGGTRCAAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALL 167


>tr|B5X813|B5X813_SALSA Exosome complex exonuclease RRP41 OS=Salmo
           salar GN=EXOS4 PE=2 SV=1
          Length = 245

 Score =  187 bits (475), Expect = 5e-46
 Identities = 90/167 (53%), Positives = 125/167 (74%), Gaps = 1/167 (0%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQ-NRG 318
           LE +S +G RLDGR+  E+R+++A++GV  +ADGSA  E GNTK +A VYGPHEV+ +R 
Sbjct: 4   LELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRS 63

Query: 319 QQLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDI 498
           + L D+A++ C+YSMA FST            S E+SL ++Q+ EAA+LTNL PR+QIDI
Sbjct: 64  KTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDI 123

Query: 499 FVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPL 639
           +V +LQ+DGG  SAC+NAA+LA+ DAGIPMRD V +C +G+++ TPL
Sbjct: 124 YVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPL 170


>tr|Q6PBZ8|Q6PBZ8_DANRE Exosc4 protein (Exosome complex exonuclease
           RRP41) OS=Danio rerio GN=exosc4 PE=2 SV=1
          Length = 245

 Score =  187 bits (474), Expect = 6e-46
 Identities = 90/167 (53%), Positives = 125/167 (74%), Gaps = 1/167 (0%)
 Frame = +1

Query: 142 LEFVSPEGLRLDGRRPTEMRQLRAKLGVVDKADGSATFEMGNTKVIAAVYGPHEVQ-NRG 318
           LE +S +G RLDGR+ TE+R+++A++ V  +ADGSA  E GNTK +A VYGPHE++ +R 
Sbjct: 4   LELLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRS 63

Query: 319 QQLFDQALVRCEYSMANFSTXXXXXXXXXXXXSVEISLVIRQSMEAAILTNLMPRTQIDI 498
           + L D+A++ C+YSMA FST            S E+SL ++Q+ EAA+LT L PR+QIDI
Sbjct: 64  KSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDI 123

Query: 499 FVHVLQADGGTRSACINAASLALADAGIPMRDIVASCASGYLNNTPL 639
           +V +LQADGG  SAC+NAA+LAL DAGIPMRD V +C++G++ +TPL
Sbjct: 124 YVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPL 170