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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949680
Clone id TST38A01NGRL0006_K07
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_K07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCAGCAGAGGCGAATGGCGGCCACAGTTCGATCCCCACGGTTGGCAGCTCTGTGACTCCA
CCTTCTCAACATCAGATTGGCGTCCAAGCTGCAAACAATGGTACAACATGTGGCTTCCGT
TGCGTTGTTTATCGCTCTGGTACTGGTGGTACTTGGATTGCCTTGGCTCCTTCACTCATT
GACGGCTCCTCCCGCGCTTCTTTCCATCTTGCCCATCATCGTTCTCCTTGTCCTCATTGT
TGCTCTCGGATTCTTGTAGGTCCCCGTTCAACTAATTATCCCTTGCTATGACGCTCAAAA
TTCTTCCATATGTAACACTACAGTCCCGCAAGGCACATATTTGAGAATGAGTTCAACAAA
GATATGAGGTGGTTTTCGCAGCATGCCATATTGTTCAAATCATCACTTATTACTTATGGT
TCATTTCATGAAGAAATAGCATTGGCTCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7T2B3
Definition sp|Q7T2B3|CT094_DANRE UPF0492 protein C20orf94 homolog OS=Danio rerio
Align length 48
Score (bit) 29.6
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949680|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_K07, 5'
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7T2B3|CT094_DANRE UPF0492 protein C20orf94 homolog OS=Danio ...    30   5.7  
sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial OS=Oen...    29   7.5  
sp|O19113|CTGF_PIG Connective tissue growth factor OS=Sus scrofa...    29   9.8  

>sp|Q7T2B3|CT094_DANRE UPF0492 protein C20orf94 homolog OS=Danio
           rerio GN=zgc:64090 PE=2 SV=1
          Length = 499

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -1

Query: 159 KEPRQSKYHQYQSDKQRNGSHMLYHCLQLGRQSDVEKVESQSCQPWGS 16
           ++ ++SK  Q Q+DK+ NGS  + H  ++ +Q++ +  +SQ  Q + S
Sbjct: 258 QDDQESKSGQVQADKEENGSGDVLH--KIAKQTNTQPPQSQDDQEFKS 303


>sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial
           OS=Oenothera bertiana GN=RPS13 PE=3 SV=2
          Length = 114

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 162 VKEPRQSKYHQYQSDKQRNGSHMLYHCLQLGRQSDVEKVESQSC 31
           +K    +KY   Q ++ R   H+++  L+ G ++D+E+  S SC
Sbjct: 41  IKRKELTKYQIDQIEQMRGQDHVVHWELKRGERADIERFISISC 84


>sp|O19113|CTGF_PIG Connective tissue growth factor OS=Sus scrofa
           GN=CTGF PE=2 SV=1
          Length = 349

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 48  PSQHQIGVQAANNGTTCGFRCVVYRSG 128
           P+  +IGV  A +G  C F   VYRSG
Sbjct: 87  PANRKIGVCTAKDGAPCVFGGTVYRSG 113
tr_hit_id A4HF28
Definition tr|A4HF28|A4HF28_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis
Align length 145
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949680|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_K07, 5'
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4HF28|A4HF28_LEIBR Putative uncharacterized protein OS=Leish...    35   1.9  
tr|B4IGI0|B4IGI0_DROSE GM11577 OS=Drosophila sechellia GN=GM1157...    34   4.1  
tr|B3NXA6|B3NXA6_DROER GG17733 OS=Drosophila erecta GN=GG17733 P...    34   4.1  
tr|Q8Y1X9|Q8Y1X9_RALSO Type 4 fimbrial pilin signal peptide prot...    33   7.1  
tr|Q6Z8Z8|Q6Z8Z8_ORYSJ Putative zinc-finger protein OS=Oryza sat...    33   7.1  
tr|A3A2B8|A3A2B8_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A2WZZ7|A2WZZ7_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|Q5RI33|Q5RI33_DANRE Connective tissue growth factor OS=Danio ...    33   9.2  
tr|Q567D8|Q567D8_DANRE Ctgf protein (Fragment) OS=Danio rerio GN...    33   9.2  
tr|Q3B7E1|Q3B7E1_DANRE Ctgf protein (Fragment) OS=Danio rerio GN...    33   9.2  

>tr|A4HF28|A4HF28_LEIBR Putative uncharacterized protein OS=Leishmania
            braziliensis GN=LbrM26_V2.1750 PE=4 SV=1
          Length = 2404

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
 Frame = +3

Query: 33   SSVTPPSQHQIGVQ-AANNGTTCGFR----CVVYRSGTGGTWIALAPSLIDGSSRASFHL 197
            S+ +P SQHQ   Q AAN+G    F     C   + GT G    ++ +   GSS     L
Sbjct: 1488 STPSPTSQHQHHHQRAANSGGASRFATSPDCASQQGGTSGPGNNMSNTY--GSSHHVNSL 1545

Query: 198  AHHRSPCPHCCSRILVGPRSTN------YPLL*RSKFFHM*HYSPARHIFENEFNKDMRW 359
            AHHR P P   +    G    N      YP+L  ++  ++  Y   + +   EF+  MR+
Sbjct: 1546 AHHRYPSPTHPNGYFTGGSQINLQAGGHYPML-GARPPYIYEYHVGQELLLEEFHAAMRF 1604

Query: 360  FSQHAILFKSSLITYGSFHEEIALA 434
               +A  F +      +F  ++ +A
Sbjct: 1605 ---NAATFGNIACLVDAFSPQVPVA 1626


>tr|B4IGI0|B4IGI0_DROSE GM11577 OS=Drosophila sechellia GN=GM11577
            PE=4 SV=1
          Length = 1076

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 126  QSDKQRNGSHMLYHCLQLGRQSDVEKVESQSCQPWGSNCG 7
            +  +Q+  S  L+   QL +QS  ++    SC PWG  CG
Sbjct: 924  EPQQQQQVSQQLHQLQQLQQQSQQQQSFEASCDPWGGECG 963


>tr|B3NXA6|B3NXA6_DROER GG17733 OS=Drosophila erecta GN=GG17733 PE=4
            SV=1
          Length = 1676

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 126  QSDKQRNGSHMLYHCLQLGRQSDVEKVESQSCQPWGSNCG 7
            +  +Q+  S  L+   QL +QS  ++    SC PWG  CG
Sbjct: 1073 EPQQQQQVSQQLHQLQQLQQQSQQQQSFEASCDPWGGECG 1112


>tr|Q8Y1X9|Q8Y1X9_RALSO Type 4 fimbrial pilin signal peptide protein
           OS=Ralstonia solanacearum GN=pilA PE=3 SV=1
          Length = 168

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 24  TVGSSVTPPSQHQIGVQAANNGTTCGFRCVVYRSGTGGTWIALAPS 161
           +VGSSV  P+++   +  A  GT  G   V Y +  GG  +AL P+
Sbjct: 73  SVGSSVFTPTKNVANLTIAGTGTVPGQITVTYTTAAGGGTLALVPT 118


>tr|Q6Z8Z8|Q6Z8Z8_ORYSJ Putative zinc-finger protein OS=Oryza sativa
           subsp. japonica GN=P0501G04.7 PE=4 SV=1
          Length = 454

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 63  IGVQAANNGTTCGFRCVVYRSGTGGTWIALAPSLIDGSSRASFHLAHHRSPCP 221
           I   ++NN T   F CV ++S   G+ +  + ++ DG  + + H+      CP
Sbjct: 336 IDTNSSNNNTGSEFPCVNFQSSNTGSLLGGSSNMFDGQDQQTSHIVLPEKSCP 388


>tr|A3A2B8|A3A2B8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004940 PE=4 SV=1
          Length = 262

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 63  IGVQAANNGTTCGFRCVVYRSGTGGTWIALAPSLIDGSSRASFHLAHHRSPCP 221
           I   ++NN T   F CV ++S   G+ +  + ++ DG  + + H+      CP
Sbjct: 144 IDTNSSNNNTGSEFPCVNFQSSNTGSLLGGSSNMFDGQDQQTSHIVLPEKSCP 196


>tr|A2WZZ7|A2WZZ7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05537 PE=4 SV=1
          Length = 431

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 63  IGVQAANNGTTCGFRCVVYRSGTGGTWIALAPSLIDGSSRASFHLAHHRSPCP 221
           I   ++NN T   F CV ++S   G+ +  + ++ DG  + + H+      CP
Sbjct: 313 IDTNSSNNNTGSEFPCVNFQSSNTGSLLGGSSNMFDGQDQQTSHIVLPEKSCP 365


>tr|Q5RI33|Q5RI33_DANRE Connective tissue growth factor OS=Danio
           rerio GN=ctgf PE=2 SV=1
          Length = 345

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 48  PSQHQIGVQAANNGTTCGFRCVVYRSG 128
           PS  +IGV  A +G TC F  +VYRSG
Sbjct: 83  PSNRRIGVCTARDGATCVFGGMVYRSG 109


>tr|Q567D8|Q567D8_DANRE Ctgf protein (Fragment) OS=Danio rerio
           GN=ctgf PE=2 SV=1
          Length = 249

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 48  PSQHQIGVQAANNGTTCGFRCVVYRSG 128
           PS  +IGV  A +G TC F  +VYRSG
Sbjct: 83  PSNRRIGVCTARDGATCVFGGMVYRSG 109


>tr|Q3B7E1|Q3B7E1_DANRE Ctgf protein (Fragment) OS=Danio rerio
           GN=ctgf PE=2 SV=1
          Length = 249

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 48  PSQHQIGVQAANNGTTCGFRCVVYRSG 128
           PS  +IGV  A +G TC F  +VYRSG
Sbjct: 83  PSNRRIGVCTARDGATCVFGGMVYRSG 109