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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949688
Clone id TST38A01NGRL0006_K15
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_K15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTTTTGGGCTCGTTGCAGAGAGCGAGCAAGAAGAAAGTGTTGTTGAAGTGGGTGTAGCTC
GTCAGCCTGCTCGATGCAGCCTCAATGGCGAGGCCCACTTCAAAGCTGGCGGCGGCACTG
CGAGCTCTGCAGACACGGACGCCTGCATTGGACAAACAAAGACGACTACCCGATGTTTTA
GACTTGTGGGTCGTGAAGCAAAAGGGTGTGGCGTACACAGGAAGGTGTGAAGGAAATTGG
ATCAGCAGGCGCCATTGCCACGGCTACGTTGAACCCTTTTCTCAAGTGAAGCTTGCCCCC
AAACGTCTGAGCCTGCGCATAATTAGTAGCAAAACCGAGGCTGATGTCTCCAAGCAGCAG
GAAAATCCACATGAAGAGCAAGTTAACGCTGGAGCATCTTCCTCCTCCCGCGATGAACGG
AATCCGTTTAGTGGTGGTGTTAAATACAGTGTAATCAGAATCAATGACATTGGCACTTGG
GAGCCTCTCATCCTGAACACATCTGAACTGGGTGTACATGCAAAGGACTTGGACCTTCTC
GCCGGTAATTTTTTTATTCCGAAGCGGTCTGCTATTGCTGTAAGAAACAATCAGATTCTT
ATCAGAATGGAAAACGTACGGGCCTTAATTTGCAAAAATCATTGTTTATTGTTTGATGCT
■■Homology search results ■■ -
sp_hit_id Q5R447
Definition sp|Q5R447|MRS2_PONAB Magnesium transporter MRS2 homolog, mitochondrial OS=Pongo abelii
Align length 51
Score (bit) 32.0
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949688|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_K15, 5'
         (660 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R447|MRS2_PONAB Magnesium transporter MRS2 homolog, mitocho...    32   3.0  
sp|Q4R4M1|MRS2_MACFA Magnesium transporter MRS2 homolog, mitocho...    32   3.0  
sp|Q9HD23|MRS2_HUMAN Magnesium transporter MRS2 homolog, mitocho...    32   3.0  
sp|Q59S85|LPE10_CANAL Mitochondrial inner membrane magnesium tra...    32   3.0  
sp|A6H5F7|RPOC2_CYCTA DNA-directed RNA polymerase subunit beta''...    31   5.1  
sp|P13836|AVRC_PSESG Avirulence protein C OS=Pseudomonas syringa...    31   6.7  
sp|O99824|NU1M_RHISA NADH-ubiquinone oxidoreductase chain 1 OS=R...    30   8.7  
sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium tran...    30   8.7  
sp|Q64610|ENPP2_RAT Ectonucleotide pyrophosphatase/phosphodieste...    30   8.7  

>sp|Q5R447|MRS2_PONAB Magnesium transporter MRS2 homolog,
           mitochondrial OS=Pongo abelii GN=MRS2 PE=2 SV=1
          Length = 443

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 505 ELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFD 657
           ELG+ A+DL             +I VRNN+I++RME ++A+I     L+ D
Sbjct: 110 ELGLQARDLRF-------QHVMSITVRNNRIIMRMEYLKAVITPECLLILD 153


>sp|Q4R4M1|MRS2_MACFA Magnesium transporter MRS2 homolog,
           mitochondrial OS=Macaca fascicularis GN=MRS2 PE=2 SV=1
          Length = 408

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 505 ELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFD 657
           ELG+ A+DL             +I VRNN+I++RME ++A+I     L+ D
Sbjct: 110 ELGLQARDLRF-------QHVMSITVRNNRIIMRMEYLKAVITPECLLILD 153


>sp|Q9HD23|MRS2_HUMAN Magnesium transporter MRS2 homolog,
           mitochondrial OS=Homo sapiens GN=MRS2 PE=2 SV=1
          Length = 443

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 505 ELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFD 657
           ELG+ A+DL             +I VRNN+I++RME ++A+I     L+ D
Sbjct: 110 ELGLQARDLRF-------QHVMSITVRNNRIIMRMEYLKAVITPECLLILD 153


>sp|Q59S85|LPE10_CANAL Mitochondrial inner membrane magnesium
           transporter LPE10 OS=Candida albicans GN=LPE10 PE=3 SV=1
          Length = 453

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +1

Query: 394 ASSSSRDERNPFSGGVKYSVIRINDIG---TWEPLILNTSELGVHAKDLDLLAGNFFIPK 564
           +SSSS       SG  K S +  +      T   L L+ S LG  + ++D++        
Sbjct: 114 SSSSSSSAGQTSSGTSKSSSLSSSSSSPHSTISALSLSNSSLG-SSTNVDIVPN------ 166

Query: 565 RSAIAVRNNQILIRMENVRALICKNHCLLFD 657
              I +R N IL+++ N+RALI  +  ++FD
Sbjct: 167 ---ITIRRNSILVQLLNIRALINHDQLIIFD 194


>sp|A6H5F7|RPOC2_CYCTA DNA-directed RNA polymerase subunit beta''
           OS=Cycas taitungensis GN=rpoC2 PE=3 SV=1
          Length = 1339

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
 Frame = +1

Query: 430 SGGVKYSVIRINDIGTWEPLILNTSELGVHAKDLDLLAGNF-FIPKR-------SAIAVR 585
           SG +KY  I+++ IG  E  + +    G  +KD  +  G F FIP+        S+I V+
Sbjct: 629 SGIIKYGTIKVDSIGNKENYLGDQRARGFRSKD-KMKGGRFLFIPEEVHILYESSSIMVQ 687

Query: 586 NNQIL 600
           NN I+
Sbjct: 688 NNSII 692


>sp|P13836|AVRC_PSESG Avirulence protein C OS=Pseudomonas syringae
           pv. glycinea GN=avrC PE=4 SV=1
          Length = 352

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 325 SSKTEADVSKQQENPHEEQVNAGASSSSRDERNPFSGGVKYSVIRINDIG 474
           S  + A   +  E P +  ++AG  SSS   R+   G  K+S++ +++IG
Sbjct: 20  SEFSTASPVRTSERPSDASLDAGLESSSACHRSGLRGPAKHSMLSLDEIG 69


>sp|O99824|NU1M_RHISA NADH-ubiquinone oxidoreductase chain 1
           OS=Rhipicephalus sanguineus GN=ND1 PE=3 SV=1
          Length = 313

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 387 VNLLFMWIFLLLGDISLGFATNYAQAQTFGGKLHLRKGFNVAVAMAPADPIS 232
           +N ++ +I +L+  +S+ F T     + F G  H+RKG N   AM    PIS
Sbjct: 3   LNFIYYFILILMVLLSIAFFT--LMERKFLGYCHIRKGPNKTGAMGLLQPIS 52


>sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium
           transporter mrs2 OS=Schizosaccharomyces pombe GN=mrs2
           PE=2 SV=1
          Length = 422

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
 Frame = +1

Query: 487 LILNTSELGVHA---------KDLDLLAGNFFIPKR------------SAIAVRNNQILI 603
           L++N +E   H          K +DL   N  +P+               I VR   ILI
Sbjct: 78  LLMNCTEFDDHGNVRVISGDFKKMDLCKQNGLLPRDLRKLNTSINSIVPVILVREGSILI 137

Query: 604 RMENVRALICKNHCLLFD 657
            + ++RALI  N  LLFD
Sbjct: 138 NLLHIRALIKANSVLLFD 155


>sp|Q64610|ENPP2_RAT Ectonucleotide
           pyrophosphatase/phosphodiesterase family member 2
           OS=Rattus norvegicus GN=Enpp2 PE=1 SV=2
          Length = 887

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 256 CHGYVEPFSQVKLAPKRLSLRIISSKTEADVSKQQENPHEEQVNAGASSSSRDERNPFSG 435
           C   VEP ++++   KRL  +     TEA+  K + + HE + N   S   R ER+   G
Sbjct: 568 CDDKVEPKNKLEELNKRLHTK---GSTEAETGKFRGSKHENKKNLNGSVEPRKERHLLYG 624
tr_hit_id A9THK8
Definition tr|A9THK8|A9THK8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 94.0
E-value 8.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949688|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_K15, 5'
         (660 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9THK8|A9THK8_PHYPA Predicted protein OS=Physcomitrella paten...    94   8e-18
tr|Q86H97|Q86H97_DICDI Similar to putative mitochondrial rna spl...    38   0.49 
tr|Q553K8|Q553K8_DICDI Putative uncharacterized protein OS=Dicty...    38   0.49 
tr|A9TBD5|A9TBD5_PHYPA Predicted protein OS=Physcomitrella paten...    37   1.1  
tr|Q9FXX5|Q9FXX5_ARATH Genomic DNA, chromosome 5, P1 clone: MTH1...    36   2.4  
tr|Q8H1G8|Q8H1G8_ARATH MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 ...    36   2.4  
tr|Q8H1G7|Q8H1G7_ARATH MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8 ...    36   2.4  
tr|Q682I2|Q682I2_ARATH MRNA, complete cds, clone: RAFL21-82-H21 ...    36   2.4  
tr|Q3E9J2|Q3E9J2_ARATH Uncharacterized protein At5g09690.2 OS=Ar...    36   2.4  
tr|Q304A0|Q304A0_ARATH Mg2+ transporter protein MGT7 OS=Arabidop...    36   2.4  
tr|Q303Z9|Q303Z9_ARATH Uncharacterized protein At5g09690.3 (Puta...    36   2.4  
tr|Q206Z2|Q206Z2_ARATH Truncated Mg2+ transporter protein MGT7 O...    36   2.4  
tr|B0CU41|B0CU41_LACBS Predicted protein OS=Laccaria bicolor (st...    35   3.2  
tr|A0LU88|A0LU88_ACIC1 FHA domain containing protein OS=Acidothe...    35   4.1  
tr|Q4BWK0|Q4BWK0_CROWT Putative uncharacterized protein OS=Croco...    34   7.1  
tr|A8IUC0|A8IUC0_CHLRE Mg2+ transporter protein, CorA-like prote...    34   9.2  

>tr|A9THK8|A9THK8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_92861 PE=4 SV=1
          Length = 586

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 40/77 (51%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
 Frame = +1

Query: 433 GGVKYSVIRINDIGTWEPLILNTSELGVHAKDLDLLA-GNFFIPKRSAIAVRNNQILIRM 609
           GG K++V+RI+D G+W  L L TSE  +H +D+DLLA    F+P+R+ I+VRN ++++RM
Sbjct: 118 GGAKFNVVRIDDDGSWHHLSLRTSEFNIHPRDIDLLARSKSFVPQRATISVRNEKVIVRM 177

Query: 610 ENVRALICKNHCLLFDA 660
           ENVRAL+C++H +LF+A
Sbjct: 178 ENVRALVCRDHAILFEA 194


>tr|Q86H97|Q86H97_DICDI Similar to putative mitochondrial rna
           splicing protein OS=Dictyostelium discoideum PE=4 SV=1
          Length = 747

 Score = 38.1 bits (87), Expect = 0.49
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
 Frame = +1

Query: 286 VKLAPKRLSLRIISSKTEADVSKQQENPHEEQVNAGASSSSRDERNPFS---GGVK---Y 447
           + +  K+ + +I+S  T + +SK  +     + ++ +SSS  + +NP S    G+K    
Sbjct: 91  IDIINKQKNEKIVS--TTSTISKIFDEESFSKPSSSSSSSQNNNQNPSSFTTDGLKSLNV 148

Query: 448 SVIRINDIGTWEPLILNT--SELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVR 621
             I IN   + E     +  +EL + A+DL  +  +F  P+   I VR+  ILI +  VR
Sbjct: 149 LTIDINGNRSEERFYKGSLSNELKLQARDLRTIDPSF-PPQMPTILVRDKVILISIGCVR 207

Query: 622 ALICKNHCLLFD 657
           A++  N  LLFD
Sbjct: 208 AIVQYNRVLLFD 219


>tr|Q553K8|Q553K8_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0217667 PE=4 SV=1
          Length = 747

 Score = 38.1 bits (87), Expect = 0.49
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
 Frame = +1

Query: 286 VKLAPKRLSLRIISSKTEADVSKQQENPHEEQVNAGASSSSRDERNPFS---GGVK---Y 447
           + +  K+ + +I+S  T + +SK  +     + ++ +SSS  + +NP S    G+K    
Sbjct: 91  IDIINKQKNEKIVS--TTSTISKIFDEESFSKPSSSSSSSQNNNQNPSSFTTDGLKSLNV 148

Query: 448 SVIRINDIGTWEPLILNT--SELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVR 621
             I IN   + E     +  +EL + A+DL  +  +F  P+   I VR+  ILI +  VR
Sbjct: 149 LTIDINGNRSEERFYKGSLSNELKLQARDLRTIDPSF-PPQMPTILVRDKVILISIGCVR 207

Query: 622 ALICKNHCLLFD 657
           A++  N  LLFD
Sbjct: 208 AIVQYNRVLLFD 219


>tr|A9TBD5|A9TBD5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169118 PE=4 SV=1
          Length = 436

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +1

Query: 598 LIRMENVRALICKNHCLLFDA 660
           ++RMENVRAL+C++H LLF+A
Sbjct: 1   MVRMENVRALLCRDHVLLFEA 21


>tr|Q9FXX5|Q9FXX5_ARATH Genomic DNA, chromosome 5, P1 clone: MTH16
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 413

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 514 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 660
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100


>tr|Q8H1G8|Q8H1G8_ARATH MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7
           PE=2 SV=1
          Length = 386

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 514 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 660
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100


>tr|Q8H1G7|Q8H1G7_ARATH MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8
           PE=2 SV=1
          Length = 380

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 514 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 660
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 46  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAKEVLIQDS 92


>tr|Q682I2|Q682I2_ARATH MRNA, complete cds, clone: RAFL21-82-H21
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 294

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 514 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 660
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 46  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAKEVLIQDS 92


>tr|Q3E9J2|Q3E9J2_ARATH Uncharacterized protein At5g09690.2
           OS=Arabidopsis thaliana GN=At5g09690 PE=4 SV=1
          Length = 397

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 514 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 660
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 65  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 111


>tr|Q304A0|Q304A0_ARATH Mg2+ transporter protein MGT7 OS=Arabidopsis
           thaliana GN=MGT7 PE=2 SV=1
          Length = 386

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 514 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 660
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100