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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949710
Clone id TST38A01NGRL0006_L14
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_L14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGGCCCAAATGCAAAAGAGAGGTGTGCACTCTCTTCTTCAGCTAGCGGGAAGACTCGGAG
GCAGGGCGCGTGTTGAAAATGCGCCAGCACGATCACTGAATGGGCGATGGGCGATGCTCC
CTCCCGTTCCTGTTGTTCCTAAGAGCAATGGCTTACTTGTTTGCTTGGAGAAGCGCAAGC
CACTGATTGCCATAGCCTGGCTGAAGCAGTGCTGCCCGCTAATCTCTCAAAATGATGCCG
AAACTCTGTTCCGCACAGGCCAGGTGAAAATTCATTTGGGAGCCTCTGAAGCAAGCGACC
CTGAAAAATTTCAACTTAAGAAAATAACTAGGAGGAAGGTTCTTGCAGAAGGAACGATTC
TCTGTTTGCCAACTCGCTCTCTGCAGTTGGTGAATGAAAGCCGTGCAGCAACGAGACTAA
ACACCATATCTGAGGTTGGTGAAACTATTTCAGAAAAGGACGAGGACTGAAGCATTGATG
TTTGCTCAGTCAAAGTGCTGAATGCCCTAAAAAAGTGGGGGTGAGTTGATTCACGAGGGT
ACCACGGTAGGTGGTAGCAGTTAAGTATGTTTGATGTCTTGGTTGAT
■■Homology search results ■■ -
sp_hit_id A6LPD5
Definition sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
Align length 100
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949710|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_L14, 5'
         (587 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase OS=Clost...    33   1.1  

>sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase
           OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=proA PE=3 SV=1
          Length = 414

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +3

Query: 141 KSNGLLVCLEKRKPLIAIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEASDPEKFQLK 320
           + NGL +  +KR PL  I  + +  P ++ + A    +TG   I  G SEA +  K  +K
Sbjct: 101 RPNGLQIG-QKRVPLGVIGIIYEARPNVTCDAAGLCIKTGNAVILRGGSEAINSNKAIVK 159

Query: 321 KITRRKVLAEGTILCLPTRSLQLVNES--RAATRLNTISE 434
            +T + +   G    LP  S+QLV ++    AT +  ++E
Sbjct: 160 ALT-KGIERSG----LPKASVQLVEDTSREVATEMMRLNE 194
tr_hit_id B6U2M4
Definition tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays
Align length 65
Score (bit) 40.4
E-value 0.074
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949710|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_L14, 5'
         (587 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1       40   0.074
tr|Q69K07|Q69K07_ORYSJ Os09g0103500 protein OS=Oryza sativa subs...    40   0.097
tr|B8BCS6|B8BCS6_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.097
tr|A8MQT1|A8MQT1_HUMAN Putative uncharacterized protein CSAG4 (F...    35   3.1  
tr|A7APG7|A7APG7_BABBO Radical SAM domain containing protein OS=...    35   4.1  
tr|B4LL75|B4LL75_DROVI GJ21695 OS=Drosophila virilis GN=GJ21695 ...    34   5.3  
tr|Q9LT72|Q9LT72_ARATH Similarity to unknown protein (At3g19440)...    34   7.0  
tr|A3BVX6|A3BVX6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.0  
tr|B4KI41|B4KI41_DROMO GI10553 OS=Drosophila mojavensis GN=GI105...    33   9.1  

>tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1
          Length = 439

 Score = 40.4 bits (93), Expect = 0.074
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +3

Query: 189 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEASDPE----KFQLKKITRRKVLAEGT 356
           AI W++ CCP +  +  + LFR  +VK +L  ++ S  +    + +L++++ +  L  G 
Sbjct: 83  AIRWVRHCCPHVPASLVQKLFRLRKVKKNLVTADTSSTDSITLQLRLRRVSAKDELVPGD 142

Query: 357 ILCLP 371
           IL LP
Sbjct: 143 ILFLP 147


>tr|Q69K07|Q69K07_ORYSJ Os09g0103500 protein OS=Oryza sativa subsp.
           japonica GN=P0414D03.35 PE=4 SV=1
          Length = 448

 Score = 40.0 bits (92), Expect = 0.097
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 189 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLKKITRRKVLAEGT 356
           AI W+++CCP +  +  + LFR  +VK ++  +E S      E+ +L++++ +  L  G 
Sbjct: 86  AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGD 145

Query: 357 ILCLP 371
           IL LP
Sbjct: 146 ILFLP 150


>tr|B8BCS6|B8BCS6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30347 PE=4 SV=1
          Length = 465

 Score = 40.0 bits (92), Expect = 0.097
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +3

Query: 189 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLKKITRRKVLAEGT 356
           AI W+++CCP +  +  + LFR  +VK ++  +E S      E+ +L++++ +  L  G 
Sbjct: 86  AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGD 145

Query: 357 ILCLP 371
           IL LP
Sbjct: 146 ILFLP 150


>tr|A8MQT1|A8MQT1_HUMAN Putative uncharacterized protein CSAG4
           (Fragment) OS=Homo sapiens GN=CSAG4 PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 206 LQPGYGNQWLALLQANK*AIALRNNRNGREHRPSPIQ*SCWRIFNTRPASESSR 45
           L+ G G  + A   + K +I +R++R  R  RP P   S W   N+R   E+SR
Sbjct: 53  LRNGVGQHYPATPTSQKNSIKMRHSRTTRARRPPPSPVSLWAASNSRARPETSR 106


>tr|A7APG7|A7APG7_BABBO Radical SAM domain containing protein
           OS=Babesia bovis GN=BBOV_III008940 PE=4 SV=1
          Length = 336

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 586 STKTSNILNCYHLPWYPRESTHPHFFRAFSTLTEQTS 476
           S K+SN L  YH+P + RE  H HF  +  +L   TS
Sbjct: 38  SAKSSNYLEMYHIPKHVREELHDHFGGSLLSLKPTTS 74


>tr|B4LL75|B4LL75_DROVI GJ21695 OS=Drosophila virilis GN=GJ21695
           PE=4 SV=1
          Length = 660

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
 Frame = -2

Query: 532 ESTHPHFFRAFSTLTEQTSMLQSSSFSEIVSPTSDMVFSLVAAR-------LSFTNCRER 374
           +ST     + F TL +  S L SSS +E  + T D  F L AAR        S  N ++R
Sbjct: 373 DSTEQKLDKFFKTLEKSDSGLSSSSGNETPAATQDESFRLTAARKSKEVRLTSVLNMQQR 432

Query: 373 VGKQRIVPSARTFL 332
           V +Q  VP  RT L
Sbjct: 433 VERQCHVP-LRTIL 445


>tr|Q9LT72|Q9LT72_ARATH Similarity to unknown protein (At3g19440)
           (Putative uncharacterized protein At3g19440)
           OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1
          Length = 477

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
 Frame = +3

Query: 102 GRWAMLPPVPVVPKSNGLLVCLE------------KRKPLIAIAWLKQCCPLISQNDAET 245
           G+W  LPP    P  +G  V  +                  A+ W+ +C P + +   + 
Sbjct: 53  GKWLTLPPFS--PTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQK 110

Query: 246 LFRTGQVKIHLGAS-EASDPEKFQLKKITRRKVLAEGTILCLP 371
           LFR  QV+  +  S +  + ++ QLK++  ++ L  G  + LP
Sbjct: 111 LFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLP 153


>tr|A3BVX6|A3BVX6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027198 PE=4 SV=1
          Length = 473

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
 Frame = +3

Query: 189 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLK--------KITR 332
           AI W+++CCP +  +  + LFR  +VK ++  +E S      E+ +L+        K++ 
Sbjct: 86  AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRYVTYFCFKVSA 145

Query: 333 RKVLAEGTILCLP 371
           +  L  G IL LP
Sbjct: 146 KDQLMPGDILFLP 158


>tr|B4KI41|B4KI41_DROMO GI10553 OS=Drosophila mojavensis GN=GI10553
           PE=4 SV=1
          Length = 2389

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 1/177 (0%)
 Frame = -3

Query: 585 QPRHQTYLTATTYRGTLVNQLTPTFLGHSAL*LSKHQCFSPRPFLK*FHQPQIWCLVSLL 406
           QP+ Q  L + +    L NQ         A+ L   Q        +  HQ Q    +  +
Sbjct: 438 QPQQQQMLLSPSSNANLYNQAPAPHRFQHAVALRHQQ--------QQVHQQQRHHQMQGI 489

Query: 405 HG-FHSPTAESELANRESFLLQEPSS*LFS*VEIFQGRLLQRLPNEFSPGLCGTEFRHHF 229
           H  F  P  + +   ++ FL Q+ ++  F+ + + Q +  Q   ++   GL     + H 
Sbjct: 490 HQRFIPPQQQQQQQQQQQFLGQQQATDCFTNINLQQSQQQQLRQHQIRAGLPPPHPQQH- 548

Query: 228 ERLAGSTASARLWQSVACASPSKQVSHCS*EQQEREGASPIAHSVIVLAHFQHAPCL 58
           +RL           S+  +SP  Q      +     GASPIAHS     H  H+P +
Sbjct: 549 QRL----------MSMPLSSPQTQ------QFMSHGGASPIAHSPASSHHSMHSPLM 589