DK949726 |
Clone id |
TST38A01NGRL0006_M06 |
Library |
TST38 |
Length |
669 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_M06. 5' end sequence. |
Accession |
DK949726 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL162Contig1 |
Sequence |
CGGAAATTGTGTGTCTTTGTGTGAGGCGAACAAGCTGCTGAGCCGCCGCTCTTCCTTTCC TCTTATCTGTGTGTGCAGTGAAGAAGGCGATGGAGTACCATCCAGGCCCAGGTCGGAATC AGCTCTTTGTGCCAGGGCCCGTGAATGTCCCCGAGCAAGTTCTGCGCGCCATGAACCGCA ACAATGAAGACTACCGCTCCCCCGCCATGCCTACCCTCTCCAAGTCCGTTCTTGAGGATA TCAAACGCATCTTCAAGACCACAACAGCTACTTCCTTCATCATTCCCACCACAGGAACTG GTGCTTGGTAGAGTGCTCTAACCAACACCCTGTCTCCAAGGGACAAAATCCTCACCTTCA GGCTGGGGCAATTCAGTCTTCTATGGGTAGACCAGATGCAGCGGCTCAATTTTGATGTTG ATGTGGTGGATGTGGAATGGGGTGCTGGTGTTGACCTCTCAGTGCTTCGAGCAAAGCTTC AGTCTGACACCAAACATGAAATTAAGGCTGTGTGCGTAGTTCACAATGAGACAGCAACAG GCGTTACCAATGATCTTGCTGGGATTCGCAATGTCATAGATGCATGCCAGCATCCAGCTC TCTTTCTTGTGGATGGTGTATCATCTATTTGTGCGCTAGACTTTCGAATGGATGAGTGGT GCATAGATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56YA5 |
Definition |
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana |
Align length |
193 |
Score (bit) |
268.0 |
E-value |
2.0e-71 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949726|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_M06, 5' (669 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arab... 268 2e-71 sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyph... 187 3e-47 sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Meth... 172 1e-42 sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anaba... 98 5e-20 sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synec... 79 2e-14 sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=... 76 1e-13 sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus ... 76 2e-13 sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyo... 53 1e-06 sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo s... 50 1e-05 sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochon... 49 3e-05 sp|P09139|SPYA_RAT Serine--pyruvate aminotransferase, mitochondr... 44 6e-04 sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase OS=Orycto... 42 0.002 sp|P31029|SPYA_CALJA Serine--pyruvate aminotransferase, mitochon... 42 0.002 sp|P41689|SPYA_FELCA Serine--pyruvate aminotransferase, mitochon... 42 0.003 sp|Q6HLM0|PHNW_BACHK 2-aminoethylphosphonate--pyruvate transamin... 40 0.009 sp|Q63E45|PHNW_BACCZ 2-aminoethylphosphonate--pyruvate transamin... 40 0.009 sp|Q81TE0|PHNW_BACAN 2-aminoethylphosphonate--pyruvate transamin... 40 0.009 sp|B1HPR6|PHNW_LYSSC 2-aminoethylphosphonate--pyruvate transamin... 40 0.011 sp|A6L4N0|PHNW_BACV8 2-aminoethylphosphonate--pyruvate transamin... 40 0.011 sp|A0RBE9|PHNW_BACAH 2-aminoethylphosphonate--pyruvate transamin... 40 0.011 sp|Q73BH8|PHNW_BACC1 2-aminoethylphosphonate--pyruvate transamin... 40 0.015 sp|Q8RLU1|PHNW_BACCE 2-aminoethylphosphonate--pyruvate transamin... 39 0.025 sp|Q81G81|PHNW_BACCR 2-aminoethylphosphonate--pyruvate transamin... 38 0.056 sp|A7H804|ISCS_ANADF Cysteine desulfurase OS=Anaeromyxobacter sp... 37 0.073 sp|Q9KLY7|PHNW_VIBCH 2-aminoethylphosphonate--pyruvate transamin... 37 0.095 sp|A5F049|PHNW_VIBC3 2-aminoethylphosphonate--pyruvate transamin... 37 0.095 sp|Q57SD3|PHNW_SALCH 2-aminoethylphosphonate--pyruvate transamin... 37 0.095 sp|Q4K9L8|PHNW_PSEF5 2-aminoethylphosphonate--pyruvate transamin... 37 0.095 sp|Q9I434|PHNW_PSEAE 2-aminoethylphosphonate--pyruvate transamin... 37 0.095 sp|P96060|PHNW_SALTY 2-aminoethylphosphonate--pyruvate transamin... 37 0.12
>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 Length = 401
Score = 268 bits (685), Expect = 2e-71 Identities = 124/193 (64%), Positives = 154/193 (79%) Frame = +3
Query: 90 MEYHPGPGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXX 269 M+Y GPGR+ LFVPGPVN+PE V+RAMNRNNEDYRSPA+P L+K++LED+K+IFK Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 270 XXXXXXXXXXGAW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAG 449 GAW SALTNTLSP D+I++F +GQFSLLW+DQ +RLNF+VDVV+ +WG G Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 450 VDLSVLRAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSI 629 +L VL +KL D H IKA+C+VHNETATGVTND++ +R ++D +HPAL LVDGVSSI Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 630 CALDFRMDEWCID 668 CALDFRMDEW +D Sbjct: 181 CALDFRMDEWGVD 193
>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 Length = 405
Score = 187 bits (476), Expect = 3e-47 Identities = 93/182 (51%), Positives = 116/182 (63%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 LF+PGP N+P+ V AMN ED RSP P + + ED+K+ FK G Sbjct: 7 LFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGTG 66
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 AW SA+ NTL+ DK+L R GQFSLLWVD +RL V+V D EWG GV + L Sbjct: 67 AWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADILA 126
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 662 D HEIKAV V HNETATGV++D+AG+R +DA +HPAL +VDGVSS+ +LD RM EW Sbjct: 127 KDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEWG 186
Query: 663 ID 668 +D Sbjct: 187 VD 188
>sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens GN=sgaA PE=3 SV=1 Length = 379
Score = 172 bits (436), Expect = 1e-42 Identities = 85/169 (50%), Positives = 108/169 (63%) Frame = +3
Query: 108 PGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXX 287 PGRN LFVPGP N+P++V+RAM +ED+RS P+L+K + ED K++F Sbjct: 2 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61
Query: 288 XXXXGAW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVL 467 G W SAL+NTL+ DK+L R GQFS LW+D QRL DV V + EWG G + Sbjct: 62 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 121
Query: 468 RAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVD 614 L++D HEIKAV VVHNETATGVT+++ +R IDA HPAL VD Sbjct: 122 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVD 170
>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 Length = 383
Score = 97.8 bits (242), Expect = 5e-20 Identities = 60/182 (32%), Positives = 93/182 (51%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 L +PGP VPE L A+ ++ +R+ + V +++K + + G Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDVLMLNVSGT-G 65
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 A + + N LSP D+IL G+F WV+ Q +V+ + EWG +D KLQ Sbjct: 66 AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 125
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 662 +DT EIKAV + H+ET+TGV NDL I + + AL +VD V+S+ A + +D Sbjct: 126 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKE-HGQALIIVDAVTSLGAYNVPVDALG 184
Query: 663 ID 668 +D Sbjct: 185 LD 186
>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 Length = 384
Score = 79.3 bits (194), Expect = 2e-14 Identities = 52/182 (28%), Positives = 85/182 (46%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 L +PGP VPE VL ++ ++ +RS + ++ IK + + G Sbjct: 7 LMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEVLILAASGT-G 65
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 A + + N LS D+++ G+F W + + + WG ++ +A L Sbjct: 66 AMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDFKAVLD 125
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 662 + KAV V H+ET+TGV NDL I + A AL +VD V+S+ A+ +DEW Sbjct: 126 GHRQKPSKAVIVTHSETSTGVINDLEAINRHVKA-HGQALIIVDAVTSLGAVSVPIDEWG 184
Query: 663 ID 668 +D Sbjct: 185 LD 186
>sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1 Length = 385
Score = 76.3 bits (186), Expect = 1e-13 Identities = 55/182 (30%), Positives = 88/182 (48%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 L +PGP VP +VL AM +R+ L + +E +K++F Sbjct: 10 LMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVF-ITENDTFLITGSGTA 68
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 A A++N + DK+L G F + + ++ + +DVEWG + ++ L Sbjct: 69 AMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPEAVKEIL- 127
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 662 D +IKAV VVHNET+TG N + I V+ + AL++VD VSS+ +D++ Sbjct: 128 -DKYDDIKAVTVVHNETSTGARNPIKEIGEVVK--DYDALYIVDTVSSLGGDYVNVDKFH 184
Query: 663 ID 668 ID Sbjct: 185 ID 186
>sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1 Length = 416
Score = 75.9 bits (185), Expect = 2e-13 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 1/183 (0%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 + PGPV V +VLR M+ PA + +E ++ +F+ Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 + L + + P D +L G+F L + +R +V +++ EWG D + +++ Sbjct: 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQ-HPALFLVDGVSSICALDFRMDEW 659 K + K V +VH ET+TG + L I +AC+ ALF+VD V++I + ++DEW Sbjct: 134 ---KVKPKIVAMVHGETSTGRIHPLKAIG---EACRTEDALFIVDAVATIGGCEVKVDEW 187
Query: 660 CID 668 ID Sbjct: 188 KID 190
>sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1 Length = 407
Score = 53.1 bits (126), Expect = 1e-06 Identities = 40/182 (21%), Positives = 80/182 (43%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 L PGP N+ +V + + + Y + + +E ++ +F+ Sbjct: 21 LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTA 80
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 A + ++N + P DK++ G FS R ++ VD +WG L + + L Sbjct: 81 AMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESAL- 139
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 662 +H+ + +V ET+TGV + G+ + ++ L +VD V+++ + +D+W Sbjct: 140 --VQHKPSLLTLVFGETSTGVKQQMEGVGELCK--KYNCLLMVDCVAALGGVPVFVDDWK 195
Query: 663 ID 668 ID Sbjct: 196 ID 197
>sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1 Length = 392
Score = 49.7 bits (117), Expect = 1e-05 Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 1/185 (0%) Frame = +3
Query: 117 NQLFV-PGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXX 293 NQL + PGP N+P +++ A S M + + E I+ +F+ Sbjct: 22 NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGS 81
Query: 294 XXGAW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRA 473 A +AL N L P D L G + VD +R+ V + + G L + Sbjct: 82 GHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEE 141
Query: 474 KLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMD 653 L +H+ + + H E++TGV L G + ++ L LVD V+S+ MD Sbjct: 142 GL---AQHKPVLLFLTHGESSTGVLQPLDGFGELCH--RYKCLLLVDSVASLGGTPLYMD 196
Query: 654 EWCID 668 ID Sbjct: 197 RQGID 201
>sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochondrial OS=Mus musculus GN=Agxt PE=2 SV=2 Length = 413
Score = 48.5 bits (114), Expect = 3e-05 Identities = 45/182 (24%), Positives = 77/182 (42%) Frame = +3
Query: 123 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 302 L PGP N+ +VL A + + M + + + + I+ +F+ Sbjct: 47 LLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHC 106
Query: 303 AW*SALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 482 A +AL N L P D LT G + + + R+ V + + G L + L Sbjct: 107 AMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGL- 165
Query: 483 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 662 +H+ + +VH E++TGV L G + ++ L LVD V+S+ + MD+ Sbjct: 166 --AQHKPVLLFLVHGESSTGVVQPLDGFGELCH--RYQCLLLVDSVASLGGVPIYMDQQG 221
Query: 663 ID 668 ID Sbjct: 222 ID 223
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LKC9 |
Definition |
tr|B8LKC9|B8LKC9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
188 |
Score (bit) |
281.0 |
E-value |
3.0e-74 |
Report |
|