DK949773 |
Clone id |
TST38A01NGRL0006_O05 |
Library |
TST38 |
Length |
620 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_O05. 5' end sequence. |
Accession |
DK949773 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL210Contig1 |
Sequence |
CACATCATCATCAACATCCACAGCCTGGTGCCCCCTCACTCCAAAGAGAGTGGTCACTCC TCGGCTGGGTCTGCCATTGAATATGCGGTTTTACACTTGAAGGTAGAGCACATCATGATC ATAGGCCACAGCCGCTGTGGTGGGATCAAGGCCCTCCTTGGAATGAAGGAGGATGGGTCA AACAAGTTCAGTGAATACATAGAGGACTGGATCGGAATCGCAAAGCACGCAAGTAAGAGC ACCATGGCCAAGTGTGCCCAGGATTGTGCATTTGAAGACCAATGGGCATGCTGCGTAAAG GAAGCTGTAAATGTGTCACTGTGGAATTGCATGAGCTACCCCTTTGTGAAGGAGGGCGTT CAACAAGGGACCCTAGCTTTGCACGGCGCCTTCTTCGACTTTGTCAATGGAGCGTTTGAA CGTTGGGCTATTAACTACAAGCTCGAGGAGGCCGAGAAGTTCTAATTATAGTTTTCTCCC CCCCCAAACCCCCAAAAAAGCCCCAGTGATCTTTGTACTGTAGAGCCAAATAATTTACGA TGCCCGTGTATAATCCACACGTTAACTACCCTTCTCGTAAGAAAAGACATTTTGGTAAAA AAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P42737 |
Definition |
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana |
Align length |
145 |
Score (bit) |
153.0 |
E-value |
7.0e-37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949773|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0006_O05, 5' (596 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian... 153 7e-37 sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid... 152 9e-37 sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti... 144 3e-34 sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=... 142 2e-33 sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2... 142 2e-33 sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=... 141 3e-33 sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P... 141 3e-33 sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeu... 139 8e-33 sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac... 138 2e-32 sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria... 137 5e-32 sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa... 132 1e-30 sp|P27134|CYNT_SYNE7 Carbonic anhydrase OS=Synechococcus elongat... 65 3e-10 sp|Q54735|CYNT_SYNY3 Carbonic anhydrase OS=Synechocystis sp. (st... 63 1e-09 sp|P0ABE9|CYNT_ECOLI Carbonic anhydrase 1 OS=Escherichia coli (s... 63 1e-09 sp|P0ABF0|CYNT_ECO57 Carbonic anhydrase 1 OS=Escherichia coli O1... 63 1e-09 sp|Q9ZN54|CYNT_HELPJ Carbonic anhydrase OS=Helicobacter pylori J... 54 6e-07 sp|Q9I262|CYNT_PSEAE Carbonic anhydrase OS=Pseudomonas aeruginos... 53 1e-06 sp|O24855|CYNT_HELPY Carbonic anhydrase OS=Helicobacter pylori G... 53 1e-06 sp|O94255|CAN_SCHPO Carbonic anhydrase OS=Schizosaccharomyces po... 48 3e-05 sp|P45148|CAN_HAEIN Carbonic anhydrase 2 OS=Haemophilus influenz... 46 1e-04 sp|P53615|CAN_YEAST Carbonic anhydrase OS=Saccharomyces cerevisi... 45 3e-04 sp|Q5BCC5|CAN_EMENI Carbonic anhydrase OS=Emericella nidulans GN... 44 6e-04 sp|P61518|CAN_SHIFL Carbonic anhydrase 2 OS=Shigella flexneri GN... 40 0.012 sp|P61517|CAN_ECOLI Carbonic anhydrase 2 OS=Escherichia coli (st... 40 0.012 sp|Q86VF2|IGFN1_HUMAN Immunoglobulin-like and fibronectin type I... 35 0.29 sp|Q92585|MAML1_HUMAN Mastermind-like protein 1 OS=Homo sapiens ... 31 5.4 sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus ... 31 5.4 sp|Q11158|Y493_MYCTU Uncharacterized protein Rv0493c/MT0513 OS=M... 30 7.1
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Length = 259
Score = 153 bits (386), Expect = 7e-37 Identities = 75/145 (51%), Positives = 105/145 (72%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ NI ++VPP K ++ G+AIEYAVLHLKVE+I++IGHS CGGIK L+ DG+N Sbjct: 110 VVRNIANMVPPFDKVK-YAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNN 168
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ I A +A+ ++ AFEDQ C +EAVNVSL N ++YPFV+EGV Sbjct: 169 S-TDFIEDWVKICLPAKSKVLAE-SESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVV 226
Query: 364 QGTLALHGAFFDFVNGAFERWAINY 438 +GTLAL G ++DFVNG+FE W + + Sbjct: 227 KGTLALKGGYYDFVNGSFELWELQF 251
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Length = 347
Score = 152 bits (385), Expect = 9e-37 Identities = 76/149 (51%), Positives = 104/149 (69%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ NI ++VPP K + G+AIEYAVLHLKVE+I++IGHS CGGIK L+ DG+N Sbjct: 187 VVRNIANMVPPFDKVK-YGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNN 245
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ I A +++ D AFEDQ C +EAVNVSL N ++YPFV+EG+ Sbjct: 246 S-TDFIEDWVKICLPAKSKVISELG-DSAFEDQCGRCEREAVNVSLANLLTYPFVREGLV 303
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKLEE 450 +GTLAL G ++DFV GAFE W + + L E Sbjct: 304 KGTLALKGGYYDFVKGAFELWGLEFGLSE 332
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Length = 321
Score = 144 bits (363), Expect = 3e-34 Identities = 73/147 (49%), Positives = 98/147 (66%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ NI ++VP + K + +S G+AIEYAVLHLKVE+I++IGHS CGGIK L+ + DGS Sbjct: 172 VVRNIANMVPAYDK-TRYSGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSLPADGSE 230
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 + +IEDW+ I A + C F DQ C KEAVNVSL N ++YPFV+EG+ Sbjct: 231 S-TAFIEDWVKIGLPAKAKVQGEHVDKC-FADQCTACEKEAVNVSLGNLLTYPFVREGLV 288
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKL 444 + TLAL G +DFVNG FE W + + L Sbjct: 289 KKTLALKGGHYDFVNGGFELWGLEFGL 315
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Length = 329
Score = 142 bits (357), Expect = 2e-33 Identities = 68/147 (46%), Positives = 100/147 (68%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ N+ ++VPP K +S G+A+EYAVLHLKV+ I +IGHSRCGGIK L+ ++G + Sbjct: 180 VVRNVANMVPPFDKTK-YSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPH 238
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ + A +A+ +DQ C KEAVNVSL N ++YPFV++G++ Sbjct: 239 S-TDFIEDWVKVCLPAKSKVVAE-HNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLR 296
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKL 444 TLAL G +DFVNG FE WA+++ L Sbjct: 297 NNTLALKGGHYDFVNGTFELWALDFGL 323
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Length = 330
Score = 142 bits (357), Expect = 2e-33 Identities = 68/147 (46%), Positives = 100/147 (68%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ N+ ++VPP K +S G+A+EYAVLHLKV+ I +IGHSRCGGIK L+ ++G + Sbjct: 181 VVRNVANMVPPFDKTK-YSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPH 239
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ + A +A+ +DQ C KEAVNVSL N ++YPFV++G++ Sbjct: 240 S-TDFIEDWVKVCLPAKSKVVAE-HNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLR 297
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKL 444 TLAL G +DFVNG FE WA+++ L Sbjct: 298 NNTLALKGGHYDFVNGTFELWALDFGL 324
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Length = 330
Score = 141 bits (355), Expect = 3e-33 Identities = 68/147 (46%), Positives = 100/147 (68%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ N+ ++VPP K +S G+A+EYAVLHLKV+ I +IGHSRCGGIK L+ ++G + Sbjct: 181 VVRNVANMVPPFDKTK-YSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPH 239
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ + A +A+ +DQ C KEAVNVSL N ++YPFV++G++ Sbjct: 240 S-TDFIEDWVKVCLPAKSKVVAE-HNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLR 297
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKL 444 TLAL G +DFVNG FE WA+++ L Sbjct: 298 NKTLALKGGHYDFVNGTFELWALDFGL 324
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Length = 330
Score = 141 bits (355), Expect = 3e-33 Identities = 68/147 (46%), Positives = 100/147 (68%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ N+ ++VPP K +S G+A+EYAVLHLKV+ I +IGHSRCGGIK L+ ++G + Sbjct: 181 VVRNVANMVPPFDKTK-YSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPH 239
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ + A +A+ +DQ C KEAVNVSL N ++YPFV++G++ Sbjct: 240 S-TDFIEDWVKVCLPAKSKVVAE-HNGTHLDDQCVQCEKEAVNVSLGNLLTYPFVRDGLR 297
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKL 444 TLAL G +DFVNG FE WA+++ L Sbjct: 298 NNTLALKGGHYDFVNGTFELWALDFGL 324
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Length = 324
Score = 139 bits (351), Expect = 8e-33 Identities = 75/140 (53%), Positives = 94/140 (67%) Frame = +1
Query: 7 IINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSNK 186 I NI ++VP + K ++ GSAIEYAV LKVE I++IGHSRCGGIKALL +K DG++ Sbjct: 186 IRNIANMVPAYCKNK-YAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLK-DGADD 243
Query: 187 FSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQQ 366 ++EDW+ I A K +CA F+DQ KEAVNVSL N ++YPFVKEGV Sbjct: 244 SFHFVEDWVRIGFPAKKKVQTECAS-MPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTN 302
Query: 367 GTLALHGAFFDFVNGAFERW 426 GTL L G +DFV+G FE W Sbjct: 303 GTLKLVGGHYDFVSGKFETW 322
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Length = 319
Score = 138 bits (348), Expect = 2e-32 Identities = 69/151 (45%), Positives = 102/151 (67%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ NI ++VP K+ ++ G+AIEYAVLHLKVE+I++IGHS CGGIK L+ + G Sbjct: 170 MVRNIANMVPVFDKDK-YAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPDAGPT 228
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 +++IEDW+ I A +A+ + F +Q C KEAVNVSL N ++YPFV++G+ Sbjct: 229 T-TDFIEDWVKICLPAKHKVLAEHG-NATFAEQCTHCEKEAVNVSLGNLLTYPFVRDGLV 286
Query: 364 QGTLALHGAFFDFVNGAFERWAINYKLEEAE 456 + TLAL G ++DFVNG+FE W + Y L ++ Sbjct: 287 KKTLALQGGYYDFVNGSFELWGLEYGLSPSQ 317
>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1 Length = 190
Score = 137 bits (344), Expect = 5e-32 Identities = 69/145 (47%), Positives = 98/145 (67%) Frame = +1
Query: 4 IIINIHSLVPPHSKESGHSSAGSAIEYAVLHLKVEHIMIIGHSRCGGIKALLGMKEDGSN 183 ++ NI ++VPP+ HS AG+AIEYAVLHLKVE+I++IGHS CGGIK L+ + +DG+ Sbjct: 41 VVRNIANMVPPYDTIK-HSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGT- 98
Query: 184 KFSEYIEDWIGIAKHASKSTMAKCAQDCAFEDQWACCVKEAVNVSLWNCMSYPFVKEGVQ 363 S++IE W+ + A A C + F D C KEAVNVSL N ++YPFV++ + Sbjct: 99 PASDFIEQWVKLGLPAKSKVKANC-NNLEFADLCTKCEKEAVNVSLGNLLTYPFVRDALV 157
Query: 364 QGTLALHGAFFDFVNGAFERWAINY 438 L+L GA +DFVNGAF+ W +++ Sbjct: 158 NKKLSLKGAHYDFVNGAFDLWNLDF 182
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6Q9W7 |
Definition |
tr|Q6Q9W7|Q6Q9W7_THLCA Carbonic anhydrase OS=Thlaspi caerulescens |
Align length |
149 |
Score (bit) |
153.0 |
E-value |
8.0e-36 |
Report |
|