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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949777
Clone id TST38A01NGRL0006_O09
Library
Length 693
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_O09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCAAGTTGGTGGTCGTAGTGATGGTTTTGGAGGCAGGGGAGCATGGGGCTCAAATGGAGG
TCATTTTGATCGACGAGAGAGGCCTATCGTTGACCGTTTTGGTGATAAGGAGAAATTTAG
CGACAAAAGTGGTGGGCGAGGAGGGTACATGGATGATAGAAGCCGAGGTCGTGATGTGCC
AAGGAGATACGGTTCAAGAGATAGAGGGCGGAGCTACAGCCGCAGCCCAAGTAGGAGTTG
GGGTAGAAGTCGTAGCCGAAGCCGGAGCCGGAGTCCAAGCCGAAGTGTAAGCAGAAGTCG
GAGCCGAAGTCGCAGCTATGATAGACACAGTGATGATCGTAGAAGATGGTCTCCGTATAG
AGGACGTGGTTCATACAGGAGTAGAACACCAAGTTCTCGATCACCCCTCCGCAGCCGCTC
TCCACTAAGCAAACCTGTAAAGGCTGCCCCAGTGACTAATGTTTTGGGTGTAGAAGAGAG
GAAGTCACCCGCCATTCTGGAAGCCCCAATCACTGAAGAAGCTAATGGTTATTCAGCTAA
TGAACGTGTATCGGAAGCTAATGTGCCTGTGTCGGAGCCAGTAGCTGCATCAGCTCCTCT
CGAAGAAATAGCCGAAGATTCAATTAAGCTGGTGGATGGTCCCATTGAGCCATTGGCCAT
TGATGGTACCTCTATTGCGCCTGATGACCAGTA
■■Homology search results ■■ -
sp_hit_id Q8A014
Definition sp|Q8A014|LPXD_BACTN UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase OS=Bacteroides thetaiotaomicron
Align length 40
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949777|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_O09, 5'
         (693 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8A014|LPXD_BACTN UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    33   1.4  
sp|P33191|TUB8_SOLTU Induced stolen tip protein TUB8 (Fragment) ...    33   1.9  
sp|Q3LI67|KRA63_HUMAN Keratin-associated protein 6-3 OS=Homo sap...    32   2.5  
sp|O08884|KRA62_MOUSE Keratin-associated protein 6-2 OS=Mus musc...    32   2.5  
sp|Q5T5Y3|CAMP1_HUMAN Calmodulin-regulated spectrin-associated p...    32   2.5  
sp|Q7MXT7|LPXD_PORGI UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    32   3.2  
sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE...    32   4.2  
sp|Q7P0J3|SYP_CHRVO Prolyl-tRNA synthetase OS=Chromobacterium vi...    32   4.2  
sp|P16716|RPO2_SHEVK DNA-directed RNA polymerase 132 kDa polypep...    32   4.2  
sp|Q64XW8|LPXD_BACFR UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    32   4.2  
sp|Q5LH14|LPXD_BACFN UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    32   4.2  
sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1      31   5.5  
sp|Q9C0F0|ASXL3_HUMAN Putative Polycomb group protein ASXL3 OS=H...    31   5.5  
sp|Q3V3V9|LR16C_MOUSE Leucine-rich repeat-containing protein 16C...    31   7.2  
sp|Q2LVL5|LPXD_SYNAS UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    31   7.2  
sp|A6LDS1|LPXD_PARD8 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    31   7.2  
sp|A6KWL3|LPXD_BACV8 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    31   7.2  
sp|Q23915|KINX_DICDI Probable serine/threonine-protein kinase ki...    31   7.2  
sp|Q2NDC7|TIG_ERYLH Trigger factor OS=Erythrobacter litoralis (s...    30   9.4  
sp|Q8XZI1|LPXD_RALSO UDP-3-O-[3-hydroxymyristoyl] glucosamine N-...    30   9.4  

>sp|Q8A014|LPXD_BACTN UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Bacteroides thetaiotaomicron
           GN=lpxD PE=3 SV=1
          Length = 346

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 347 IFYDHHCVYHSCDFGSDFCLHFGLDSGS-GFGYDFYPNSY 231
           + Y +  VYH C  G++  LH G   G+ GFG+   PN Y
Sbjct: 154 LLYSNVNVYHDCRIGNECILHSGAVIGADGFGFAPTPNGY 193


>sp|P33191|TUB8_SOLTU Induced stolen tip protein TUB8 (Fragment)
           OS=Solanum tuberosum GN=TUB8 PE=2 SV=1
          Length = 211

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +2

Query: 434 PVKAAPVTNVLGVEERKSPAILE----APITE-EANGYSANERVSEANVPVSEPVAASAP 598
           PV A   T    VE   +P + +    AP+ E E    SA   V E   PV+E  AA   
Sbjct: 32  PVAAVETTTPAEVEATPAPEVTKVEEPAPVVEKEVEVESAPAPVEEEAAPVAEEAAALVA 91

Query: 599 LEEIAEDSIKLVDGPIEPLA 658
            E  A +    V   +EP+A
Sbjct: 92  EEPAAAEPTAAVAAAVEPVA 111


>sp|Q3LI67|KRA63_HUMAN Keratin-associated protein 6-3 OS=Homo
           sapiens GN=KRTAP6-3 PE=2 SV=3
          Length = 103

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 314 CDFGSDF-CLHFGLDSGSGFGYDFYPNSYLGCG 219
           C +GS   C + GLD G G GY +  +S+ GCG
Sbjct: 56  CGYGSFCGCGYRGLDCGYGCGYGYVSHSFCGCG 88


>sp|O08884|KRA62_MOUSE Keratin-associated protein 6-2 OS=Mus
           musculus GN=Krtap6-2 PE=2 SV=1
          Length = 159

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 344 FYDHHCVYHSCDFGSDFCLHFGLDSGSGFGYDFYPNSYLGCGCSS 210
           +Y + C Y  C +GS +   +G  SGSG+G  +   S  GCG  S
Sbjct: 5   YYGNSCGY-GCGYGSGYGSGYGCGSGSGYGCGY--GSGYGCGYGS 46


>sp|Q5T5Y3|CAMP1_HUMAN Calmodulin-regulated spectrin-associated
            protein 1 OS=Homo sapiens GN=CAMSAP1 PE=1 SV=2
          Length = 1602

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 21/72 (29%), Positives = 40/72 (55%)
 Frame = +2

Query: 458  NVLGVEERKSPAILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIAEDSIKLVD 637
            N+L  E+     +L+A + E   G S+++   + +VPV EP+ + A L E+    +K  D
Sbjct: 1189 NILS-EQMSLKEVLDASVKEV--GSSSSDVSGKESVPVEEPLRSRASLIEVDLSDLKAPD 1245

Query: 638  GPIEPLAIDGTS 673
               E +++DG++
Sbjct: 1246 EDGELVSLDGSA 1257


>sp|Q7MXT7|LPXD_PORGI UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Porphyromonas gingivalis GN=lpxD
           PE=3 SV=1
          Length = 349

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 350 TIFYDHHCVYHSCDFGSDFCLHFGLDSGSGFGYDFYPNS 234
           TI Y H  VY  C  GS   +H G   G+  G+ F PN+
Sbjct: 153 TILYPHVTVYDGCSIGSRCVIHSGAVIGAD-GFGFAPNA 190


>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1
            SV=3
          Length = 18141

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 437  VKAAPVTNVLGVEERKSPAILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIAE 616
            ++  P+ NV G+     P+ L A +T  +        V +  VP+     A APL+ IA+
Sbjct: 9041 IEVVPIDNVGGIHLAPQPSTLLATLT--STDIVNQSHVIDTQVPLEMESEAQAPLDNIAQ 9098

Query: 617  DSIK 628
              IK
Sbjct: 9099 ARIK 9102


>sp|Q7P0J3|SYP_CHRVO Prolyl-tRNA synthetase OS=Chromobacterium
           violaceum GN=proS PE=3 SV=1
          Length = 568

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 491 AILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIAEDSIKLVDGPIEPLAID 664
           AI+  P +E    Y+AN  ++EA  P  E  AASA L ++    +K +   ++ L ID
Sbjct: 220 AIVYCPTSE----YAANIELAEAVAPAGERPAASAALAKVHTPKVKTIAELVDFLKID 273


>sp|P16716|RPO2_SHEVK DNA-directed RNA polymerase 132 kDa
           polypeptide (Fragment) OS=Sheeppox virus (strain KS-1)
           GN=RPO132 PE=3 SV=1
          Length = 919

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -2

Query: 401 IENLVFYSCMNHVLYTETIFYDHHCVYHSCDFGSDFCLHFGLDSGSGFGYDFYPNSYLGC 222
           IE   F +    V     +     C YH CDF ++F   +   S  G  ++  P + LGC
Sbjct: 388 IEQFTFSNVCESVQKFRALPKSEKCKYHLCDFPAEFKDGYVASSLVGINHNSGPRAILGC 447


>sp|Q64XW8|LPXD_BACFR UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase OS=Bacteroides fragilis GN=lpxD PE=3
           SV=1
          Length = 346

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 347 IFYDHHCVYHSCDFGSDFCLHFGLDSGS-GFGYDFYPNSY 231
           I Y +  VYH C  G++  LH G   G+ GFG+   P  Y
Sbjct: 154 ILYANSTVYHDCRVGNNCILHAGCVIGADGFGFAPTPQGY 193
tr_hit_id A7UR99
Definition tr|A7UR99|A7UR99_ANOGA AGAP007563-PA OS=Anopheles gambiae
Align length 83
Score (bit) 40.8
E-value 0.082
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949777|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_O09, 5'
         (693 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7UR99|A7UR99_ANOGA AGAP007563-PA OS=Anopheles gambiae GN=AGA...    41   0.082
tr|B6G891|B6G891_9ACTN Putative uncharacterized protein OS=Colli...    38   0.54 
tr|A1C839|A1C839_ASPCL PT repeat family protein OS=Aspergillus c...    38   0.70 
tr|Q0EZ74|Q0EZ74_9PROT Translation initiation factor IF-2 OS=Mar...    37   1.6  
tr|Q1I778|Q1I778_PSEE4 Putative uncharacterized protein OS=Pseud...    36   2.0  
tr|B4W8H9|B4W8H9_9CAUL TonB-dependent receptor domain protein OS...    36   2.7  
tr|A9VBW6|A9VBW6_MONBE Predicted protein OS=Monosiga brevicollis...    36   2.7  
tr|B0S5J7|B0S5J7_DANRE Aspartate beta-hydroxylase OS=Danio rerio...    35   5.9  
tr|Q894M3|Q894M3_CLOTE Putative uncharacterized protein OS=Clost...    35   5.9  
tr|Q470H5|Q470H5_RALEJ Probable proline-rich protein OS=Ralstoni...    35   5.9  
tr|A4WX08|A4WX08_RHOS5 Antenna complex, alpha/beta subunit OS=Rh...    35   5.9  
tr|B5HTP5|B5HTP5_9ACTO Putative uncharacterized protein OS=Strep...    35   5.9  
tr|Q9W072|Q9W072_DROME CG13924 OS=Drosophila melanogaster GN=CG1...    35   5.9  
tr|A7JX56|A7JX56_PASHA Putative uncharacterized protein OS=Mannh...    34   7.7  
tr|B8BDD3|B8BDD3_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.7  
tr|Q9PUR8|Q9PUR8_PSEAM Pepsinogen A form IIb OS=Pseudopleuronect...    34   7.8  

>tr|A7UR99|A7UR99_ANOGA AGAP007563-PA OS=Anopheles gambiae GN=AGAP007563
             PE=4 SV=1
          Length = 15844

 Score = 40.8 bits (94), Expect = 0.082
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +2

Query: 437   VKAAPVTNVLGVEERKSPAIL-EAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIA 613
             V AAPV  VL V   ++ A+  E P  E+A        V+E  + VS+P+  +AP+E + 
Sbjct: 12465 VAAAPVEEVLDVAVEQTDAVTAELPQEEQAAASEIPSAVTETPI-VSKPILEAAPIEAVL 12523

Query: 614   EDSIKLVDGPIEPLAIDGTSIAP 682
             E  ++   G  + L ++G  +AP
Sbjct: 12524 EQQVE-ETGTADALKLEGEQLAP 12545


>tr|B6G891|B6G891_9ACTN Putative uncharacterized protein
           OS=Collinsella stercoris DSM 13279 GN=COLSTE_00281 PE=4
           SV=1
          Length = 338

 Score = 38.1 bits (87), Expect = 0.54
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -1

Query: 573 DTGTLASDTRSLAE*PLASSVIGASRMAGDFLSSTPK 463
           DT +LA  +R+LAE P+   +IG SRMA DF S TP+
Sbjct: 111 DTFSLAEASRALAERPVDGVIIGMSRMAPDFESFTPQ 147


>tr|A1C839|A1C839_ASPCL PT repeat family protein OS=Aspergillus
            clavatus GN=ACLA_076000 PE=4 SV=1
          Length = 1885

 Score = 37.7 bits (86), Expect = 0.70
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = +2

Query: 431  KPVKAAPVTNVLGVEERKSPAILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEI 610
            +P    P+     VEE  +   +EAP        +  E V E   PV +PVA   P EE+
Sbjct: 1296 EPAAEEPIAEAAAVEEPVAEKQVEAP--------AVVEHVQEEEKPVEKPVAVVEPQEEV 1347

Query: 611  AEDSIKLVDGPIEPLAIDGTSIAPDD 688
            A +     D   +P+ +D  + A ++
Sbjct: 1348 AAEPAVTQDLAEDPVVVDEVAKAVEE 1373


>tr|Q0EZ74|Q0EZ74_9PROT Translation initiation factor IF-2
           OS=Mariprofundus ferrooxydans PV-1 GN=SPV1_07641 PE=3
           SV=1
          Length = 1045

 Score = 36.6 bits (83), Expect = 1.6
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 434 PVKAAPVTNVLGVEERKSPAILEAPITEEANGYSA-NERVSEANVPVSEPVAASAP 598
           P  AAP    L   +R + A+ +  +TE AN  +A  ++ ++A    SEP AA AP
Sbjct: 119 PAAAAPKAKPLAPAQRAAAAVEQRKLTEAANKAAAEQQKAADAKAAASEPAAAEAP 174


>tr|Q1I778|Q1I778_PSEE4 Putative uncharacterized protein
           OS=Pseudomonas entomophila (strain L48) GN=PSEEN3788
           PE=4 SV=1
          Length = 308

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 434 PVKAAPVTNVLGVEERKSPAILEA--PITEEANGYSANERVSEANVPVSEPVAASAPLEE 607
           PV A P       + +  P +L    P+ E A      E V+EAN+PV   V A+ P+  
Sbjct: 75  PVAARPFAEP---QAKVLPTVLPPLQPVPEPAAAVVDTEVVAEANIPVLTEVQAAEPVAP 131

Query: 608 IAEDSIKLVDGPIEPLAIDG 667
           + +  +     P+ P  +DG
Sbjct: 132 LVDVHLPAPAAPVPPATVDG 151


>tr|B4W8H9|B4W8H9_9CAUL TonB-dependent receptor domain protein
           OS=Brevundimonas sp. BAL3 GN=BBAL3_1307 PE=4 SV=1
          Length = 673

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
 Frame = +2

Query: 434 PVKAAPVTNVLGVEERKSPAILEAPITEEANGYSANE----------------RVSEANV 565
           P  A  +T V+G+ ER S  +L+  + E     +A                    S+   
Sbjct: 117 PYGAGALTGVIGLTERDSGGVLDLSVAERGGARAAGSGSTMLGPVGVTLSGLYEASDGYT 176

Query: 566 PVSEPVAASA--PLEEIAEDSIKLVDGPIEPLAIDGTSIA 679
           PV  P A +A  PL+  +  +   VD P++ L ++G +++
Sbjct: 177 PVRGPAAGAADTPLDLDSRSAALRVDAPLDGLNLEGANLS 216


>tr|A9VBW6|A9VBW6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=34462 PE=4 SV=1
          Length = 550

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 26/83 (31%), Positives = 32/83 (38%)
 Frame = +2

Query: 443 AAPVTNVLGVEERKSPAILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIAEDS 622
           AAP      VEE  +P    AP  E A    A     EA  P  E    +AP EE A  +
Sbjct: 217 AAPTEESAPVEEAAAPTEEPAPAEESAPAEEAAAPAEEAAAPAEETAEEAAPAEEAAAPA 276

Query: 623 IKLVDGPIEPLAIDGTSIAPDDQ 691
            +    P E  A      AP ++
Sbjct: 277 EE--SAPTEEAAAPAEEAAPAEE 297


>tr|B0S5J7|B0S5J7_DANRE Aspartate beta-hydroxylase OS=Danio rerio
           GN=asph PE=4 SV=1
          Length = 472

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = +2

Query: 440 KAAPVTNVLGVEERKSPAILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIAED 619
           + APV   + VEE     ++EA   EEA     +    E N+PV EPV    P+EE  E+
Sbjct: 304 ETAPVEEAVEVEEEAVEEVVEA---EEAVEELESVDEVEENLPVEEPVEDLEPVEEPVEE 360

Query: 620 SIKLVDGPIEP 652
           + ++ +   EP
Sbjct: 361 TEQVEEAFEEP 371


>tr|Q894M3|Q894M3_CLOTE Putative uncharacterized protein
           OS=Clostridium tetani GN=CTC_01517 PE=4 SV=1
          Length = 221

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -2

Query: 374 MNHVLYTETIFYDHHCVYHSCDFGSDFCLHFGLDSG--SGFGYDFYPNSYLGCGCSSALY 201
           M+H ++ +      HC++H  + G D C+H G++ G  +   YD  P  +    C    Y
Sbjct: 100 MDHCMHHDMNPGMDHCMHHGMNPGMDHCMHHGMNPGMDNCMHYDMNPGMHHDMHCCMPPY 159

Query: 200 LLNRISLAHHDLGFYHP 150
           + + +    H +   HP
Sbjct: 160 MHSEMMC--HPMMMCHP 174


>tr|Q470H5|Q470H5_RALEJ Probable proline-rich protein OS=Ralstonia
           eutropha (strain JMP134) GN=Reut_A1843 PE=4 SV=1
          Length = 207

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = +2

Query: 449 PVTNVLGVEERKSPAILEAPITEEANGYSANERVSEANVPVSEPVAASAPLEEIAEDS 622
           PVT  L V   K+PA   AP TE++N +S              PVAA +P  E A  S
Sbjct: 68  PVTEALPVSPSKAPAQASAPATEDSNLFSLYAMRRVEAPAAQAPVAALSPASEDAVHS 125