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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949831
Clone id TST38A01NGRL0007_A17
Library
Length 312
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_A17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGAACTGAAGAACGGCCGTCTGGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCCAT
CGTTACCGGCAAGGGTCCTATTGAAAACCTGTCTGATCACTTGGCGGACCCCGCCATCAA
CAACGCCTGGGCTTACGCCACCAACTTCACCCCCGGAAAGTGAAACGGAGCTGTCCTGGC
TGTTCAATTGTGGCTATGGCCTTCGTCTTAAGTGGTTAAACGAATGTTGTGTAACTCATT
GAGCTTTTTTGGCAATGTAAAGTTAAGAAATACTTTTCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 53
Score (bit) 112.0
E-value 6.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949831|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_A17, 5'
         (279 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...   112   6e-25
sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloropl...   105   5e-23
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...   104   1e-22
sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chlorop...   104   1e-22
sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb...   104   1e-22
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop...   104   1e-22
sp|P08222|CB22_CUCSA Chlorophyll a-b binding protein of LHCII ty...   104   1e-22
sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII ty...   104   1e-22
sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 memb...   104   2e-22
sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chl...   104   2e-22
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...   104   2e-22
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...   103   2e-22
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...   103   2e-22
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...   103   2e-22
sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloropl...   103   2e-22
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...   103   2e-22
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl...   103   2e-22
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...   103   2e-22
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl...   103   2e-22
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...   103   2e-22
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl...   103   3e-22
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...   103   3e-22
sp|Q00827|CB48_MAIZE Chlorophyll a-b binding protein 48, chlorop...   103   3e-22
sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop...   103   3e-22
sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas...   103   3e-22
sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty...   103   3e-22
sp|P10707|CB2D_SOLLC Chlorophyll a-b binding protein 1D (Fragmen...   102   5e-22
sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloro...   102   5e-22
sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloro...   102   5e-22
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop...   102   5e-22

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
           F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
           SV=1
          Length = 265

 Score =  112 bits (280), Expect = 6e-25
 Identities = 52/53 (98%), Positives = 53/53 (100%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPA+NNAWAYATNFTPGK
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265


>sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5,
           chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5
           PE=2 SV=1
          Length = 237

 Score =  105 bits (263), Expect = 5e-23
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENLSDH+ADP  NNAWAYATNF PGK
Sbjct: 185 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237


>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member
           1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 274

 Score =  104 bits (260), Expect = 1e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 222 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274


>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A,
           chloroplastic OS=Pyrus pyrifolia PE=2 SV=1
          Length = 278

 Score =  104 bits (260), Expect = 1e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278


>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member
           1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 278

 Score =  104 bits (260), Expect = 1e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 226 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278


>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9,
           chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1
          Length = 265

 Score =  104 bits (260), Expect = 1e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265


>sp|P08222|CB22_CUCSA Chlorophyll a-b binding protein of LHCII type
           1 (Fragment) OS=Cucumis sativus PE=2 SV=1
          Length = 206

 Score =  104 bits (260), Expect = 1e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct: 154 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206


>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type
           I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1
          Length = 255

 Score =  104 bits (260), Expect = 1e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct: 203 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255


>sp|P15192|CB22_PINSY Chlorophyll a-b binding protein type 2 member
           2 (Fragment) OS=Pinus sylvestris PE=2 SV=1
          Length = 150

 Score =  104 bits (259), Expect = 2e-22
 Identities = 48/53 (90%), Positives = 49/53 (92%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHLADP  NNAWAYATNF PGK
Sbjct: 98  EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150


>sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I,
           chloroplastic OS=Pinus thunbergii PE=2 SV=1
          Length = 266

 Score =  104 bits (259), Expect = 2e-22
 Identities = 48/53 (90%), Positives = 49/53 (92%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHLADP  NNAWAYATNF PGK
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
tr_hit_id Q38713
Definition tr|Q38713|Q38713_AMAHP Chlorophyll a/b binding protein OS=Amaranthus hypochondriacus
Align length 53
Score (bit) 107.0
E-value 3.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949831|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_A17, 5'
         (279 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q38713|Q38713_AMAHP Chlorophyll a/b binding protein OS=Amaran...   107   3e-22
tr|Q40771|Q40771_PICAB Light harvesting chlorophyll a /b-binding...   106   7e-22
tr|Q40770|Q40770_PICAB Light harvesting chlorophyll a /b-binding...   106   7e-22
tr|O48657|O48657_FAGCR Chlorophyll a/b-binding protein OS=Fagus ...   106   7e-22
tr|B2BAK8|B2BAK8_LILLO Chlorophyll a/b binding protein of LHCII ...   106   7e-22
tr|Q41449|Q41449_SOLTU Chlorophyll a,b binding protein type I OS...   105   9e-22
tr|Q40958|Q40958_PINPA Type 2 light-harvesting chlorophyll a/b-b...   105   9e-22
tr|O49812|O49812_BETVU Chlorophyll a/b-binding protein OS=Beta v...   105   9e-22
tr|A9NP21|A9NP21_PICSI Putative uncharacterized protein OS=Picea...   105   9e-22
tr|A9NLD5|A9NLD5_PICSI Putative uncharacterized protein OS=Picea...   105   9e-22
tr|Q41007|Q41007_PEA Chlorophyll a/b-binding protein (Fragment) ...   105   1e-21
tr|A9P1P6|A9P1P6_PICSI Putative uncharacterized protein OS=Picea...   105   1e-21
tr|A9NK15|A9NK15_PICSI Putative uncharacterized protein OS=Picea...   105   1e-21
tr|Q93XK4|Q93XK4_PINCO Chlorophyll a/b binding protein OS=Pinus ...   105   1e-21
tr|Q40934|Q40934_PSEMZ Light-harvesting chlorophyll a/b binding ...   105   1e-21
tr|Q40788|Q40788_PINCO Chlorophyll a/b binding protein OS=Pinus ...   105   1e-21
tr|Q3LFQ5|Q3LFQ5_PANGI Chlorophyll a/b binding protein OS=Panax ...   105   1e-21
tr|Q9XF73|Q9XF73_9ASPA Putative chlorophyll a/b-binding protein ...   104   2e-21
tr|Q9LKH9|Q9LKH9_PHAAU LHCII type I chlorophyll a/b-binding prot...   104   2e-21
tr|Q43437|Q43437_SOYBN Photosystem II type I chlorophyll a/b-bin...   104   2e-21
tr|Q41234|Q41234_PINTH Chlorophyll a/b-binding protein OS=Pinus ...   104   2e-21
tr|Q40957|Q40957_PINPA Type 1 light-harvesting chlorophyll a/b-b...   104   2e-21
tr|Q40769|Q40769_PICAB Light harvesting chlorophyll a /b-binding...   104   2e-21
tr|Q39831|Q39831_SOYBN Chlorophyll a/b-binding protein OS=Glycin...   104   2e-21
tr|Q33516|Q33516_HEDHE Light harvesting chlorophyll a /b binding...   104   2e-21
tr|Q1KLZ3|Q1KLZ3_9ROSI Putative chloroplast chlorophyll a/b-bind...   104   2e-21
tr|Q0H640|Q0H640_SORBI Putative chloroplast chlorophyll A-B bind...   104   2e-21
tr|O81391|O81391_MEDSA Chlorophyll a/b binding protein OS=Medica...   104   2e-21
tr|B6V6T6|B6V6T6_9CONI Putative chloroplast chlorophyll a/b-bind...   104   2e-21
tr|B4FUA1|B4FUA1_MAIZE Chlorophyll a-b binding protein 1 OS=Zea ...   104   2e-21

>tr|Q38713|Q38713_AMAHP Chlorophyll a/b binding protein
           OS=Amaranthus hypochondriacus GN=Lhcb2*Ah1 PE=4 SV=1
          Length = 264

 Score =  107 bits (267), Expect = 3e-22
 Identities = 50/53 (94%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP  NNAWAYATNF PGK
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANNAWAYATNFVPGK 264


>tr|Q40771|Q40771_PICAB Light harvesting chlorophyll a /b-binding
           protein Lhcb1*2-2 OS=Picea abies GN=Lhcb1*2-2 PE=2 SV=1
          Length = 275

 Score =  106 bits (264), Expect = 7e-22
 Identities = 49/53 (92%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 223 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 275


>tr|Q40770|Q40770_PICAB Light harvesting chlorophyll a /b-binding
           protein Lhcb1*2-1 OS=Picea abies GN=Lhcb1*2-1 PE=2 SV=1
          Length = 274

 Score =  106 bits (264), Expect = 7e-22
 Identities = 49/53 (92%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 222 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 274


>tr|O48657|O48657_FAGCR Chlorophyll a/b-binding protein OS=Fagus
           crenata PE=2 SV=1
          Length = 264

 Score =  106 bits (264), Expect = 7e-22
 Identities = 49/53 (92%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DHLADP  NNAWAYATNF PGK
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 264


>tr|B2BAK8|B2BAK8_LILLO Chlorophyll a/b binding protein of LHCII
           type I OS=Lilium longiflorum PE=2 SV=1
          Length = 264

 Score =  106 bits (264), Expect = 7e-22
 Identities = 49/53 (92%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPA NNAWAYATNF PGK
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPATNNAWAYATNFVPGK 264


>tr|Q41449|Q41449_SOLTU Chlorophyll a,b binding protein type I
           OS=Solanum tuberosum PE=4 SV=1
          Length = 265

 Score =  105 bits (263), Expect = 9e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENLSDH+ADP  NNAWAYATNF PGK
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 265


>tr|Q40958|Q40958_PINPA Type 2 light-harvesting chlorophyll
           a/b-binding polypeptide (Fragment) OS=Pinus palustris
           GN=Lhcb2 PE=2 SV=1
          Length = 55

 Score =  105 bits (263), Expect = 9e-22
 Identities = 49/53 (92%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           E+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHLADPA NNAWAYATNF PGK
Sbjct: 3   EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPAANNAWAYATNFVPGK 55


>tr|O49812|O49812_BETVU Chlorophyll a/b-binding protein OS=Beta
           vulgaris subsp. vulgaris PE=2 SV=1
          Length = 264

 Score =  105 bits (263), Expect = 9e-22
 Identities = 49/53 (92%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP  NNAWA+ATNF PGK
Sbjct: 212 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANNAWAFATNFVPGK 264


>tr|A9NP21|A9NP21_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 266

 Score =  105 bits (263), Expect = 9e-22
 Identities = 50/53 (94%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENL DHLADPA NNAWAYATNF PGK
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPANNNAWAYATNFVPGK 266


>tr|A9NLD5|A9NLD5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 266

 Score =  105 bits (263), Expect = 9e-22
 Identities = 50/53 (94%), Positives = 50/53 (94%)
 Frame = +2

Query: 2   ELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAINNAWAYATNFTPGK 160
           ELKNGRLAMFSMFGFFVQAIVTGKGPIENL DHLADPA NNAWAYATNF PGK
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPANNNAWAYATNFVPGK 266