DK949866 |
Clone id |
TST38A01NGRL0007_C05 |
Library |
TST38 |
Length |
701 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_C05. 5' end sequence. |
Accession |
DK949866 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL100Contig1 |
Sequence |
CGCAAGTGGCAATCATTGATTGAGGCACATGTGGATGTGAAGACCACTGACAACTACACT TTGAGGTTATTTTGTATTGCCTTCACAAAAAAGCGCCCCAATCAAATTAAGAAGACTTGC TATGCTCAGACGAGTCAAATTCGACAGATCCGTAAGAAAATGATTGAGATAATGGTCCGT GAAGCTCAATCTTGTGACCTGAAGGATCTTGTGGCTAAGTTTATACCTGAGGCTATTGGA AAGGAGATTGAGAAGGCCACTGCAGGCATTTATCCTCTGCAAAACATTTACATTAGAAAA GTAAAAATTCTGAAAGCACCCAAATTTGATTTGGGGAAGCTGATGGAGGTACATGGGGAT TATTCAGAGGACGTTGGTGTAAAGGTTGAGAGGCCTGCGGAGGATGCAGAGCCCAAGGTG GAGATGGAGTTGGTTGGTGCTTAAATTTTAGTGCCCGCCTTCTATGAATTTTGCGCATTG CTAGTTGTGCCTTCTATTGCGGATTCCTTCATTAGGAAGAGTAGGTTCAGGAAGAACCTT GGCTGGCAGTTTAGTCCTGAGTGATACTGCTTCAAAGATTTTTGAAAAATAGGCATTGTA ATACTGATGAATTGAGTTTCCTAAGTTTTGTATGGTGGAAGGCACAAGTTTTATCNNAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9CAV0 |
Definition |
sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana |
Align length |
148 |
Score (bit) |
243.0 |
E-value |
6.0e-64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949866|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_C05, 5' (641 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis... 243 6e-64 sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus ann... 241 2e-63 sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis... 241 3e-63 sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus r... 238 3e-62 sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa ... 229 1e-59 sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa s... 228 2e-59 sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a OS=Tortula rurali... 190 5e-48 sp|Q98TX2|RS3A_OPHHA 40S ribosomal protein S3a OS=Ophiophagus ha... 187 5e-47 sp|Q642T2|RS3A_XENTR 40S ribosomal protein S3a OS=Xenopus tropic... 186 9e-47 sp|Q801S3|RS3A_XENLA 40S ribosomal protein S3a OS=Xenopus laevis... 186 1e-46 sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a OS=Oryzias latipe... 186 1e-46 sp|Q4R4Z6|RS3A_MACFA 40S ribosomal protein S3a OS=Macaca fascicu... 186 1e-46 sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a OS=Homo sapiens G... 186 1e-46 sp|P61246|RS3A_FELCA 40S ribosomal protein S3a (Fragment) OS=Fel... 186 1e-46 sp|Q56JV9|RS3A_BOVIN 40S ribosomal protein S3a OS=Bos taurus GN=... 186 1e-46 sp|Q4T8S6|RS3A_TETNG 40S ribosomal protein S3a OS=Tetraodon nigr... 185 2e-46 sp|Q6PBY1|RS3A_DANRE 40S ribosomal protein S3a OS=Danio rerio GN... 185 2e-46 sp|P49242|RS3A_RAT 40S ribosomal protein S3a OS=Rattus norvegicu... 184 3e-46 sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a OS=Mus musculus G... 184 3e-46 sp|Q6DV02|RS3A_GECJA 40S ribosomal protein S3a OS=Gecko japonicu... 184 3e-46 sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a OS=Eimeria tenell... 182 1e-45 sp|P49395|RS3A_APLCA 40S ribosomal protein S3a OS=Aplysia califo... 171 4e-42 sp|P40910|RS3A_CANAL 40S ribosomal protein S3aE OS=Candida albic... 167 3e-41 sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a OS=Caenorhabditis... 164 3e-40 sp|Q09781|RS3A_SCHPO 40S ribosomal protein S3aE-A OS=Schizosacch... 161 2e-39 sp|O94438|RS3B_SCHPO 40S ribosomal protein S3aE-B OS=Schizosacch... 161 3e-39 sp|P23248|RS3B_YEAST 40S ribosomal protein S1-B OS=Saccharomyces... 155 2e-37 sp|P33442|RS3A_YEAST 40S ribosomal protein S1-A OS=Saccharomyces... 153 6e-37 sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a OS=Anopheles gamb... 150 5e-36 sp|P55830|RS3A_DROME 40S ribosomal protein S3a OS=Drosophila mel... 143 7e-34
>sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=2 SV=3 Length = 262
Score = 243 bits (620), Expect = 6e-64 Identities = 118/148 (79%), Positives = 137/148 (92%), Gaps = 1/148 (0%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ+LIEAHVDVKTTD+YTLRLFCIAFTK+R NQ+K+TCYAQ+SQIRQIR+KM +IMVR Sbjct: 115 KKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVR 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 EA SCDLKDLVAKFIPEAIG+EIEKAT GIYPLQN++IRKVKILKAPKFDLGKLM+VHGD Sbjct: 175 EASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGD 234
Query: 361 YS-EDVGVKVERPAEDAEPKVEMELVGA 441 YS EDVGVKV+RPA++ + E++GA Sbjct: 235 YSAEDVGVKVDRPADEMAVEEPTEIIGA 262
>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2 Length = 260
Score = 241 bits (615), Expect = 2e-63 Identities = 114/147 (77%), Positives = 137/147 (93%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQSLIEAHVDVKTTDN+TLR+FCI FTKKR NQ+K+TCYAQ+SQI+QIR+KM EIMV Sbjct: 115 KKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVT 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 +AQ+CDLK+LV KFIPE+IG+EIEKAT+ IYPLQN++IRKVKILKAPKFD+GKLMEVHGD Sbjct: 175 QAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGD 234
Query: 361 YSEDVGVKVERPAEDAEPKVEMELVGA 441 YSEDVGVK++RPAE+A P+ E++GA Sbjct: 235 YSEDVGVKLDRPAEEAAPEA-TEVIGA 260
>sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3 Length = 262
Score = 241 bits (614), Expect = 3e-63 Identities = 116/148 (78%), Positives = 136/148 (91%), Gaps = 1/148 (0%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ+LIEAHVDVKTTD YTLR+FCIAFTK+R NQ+K+TCYAQ+SQIRQIR+KM EIMV+ Sbjct: 115 KKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVK 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 EA SCDLK+LVAKFIPEAIG+EIEKAT GIYPLQN++IRKVKILKAPKFDLGKLMEVHGD Sbjct: 175 EASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
Query: 361 Y-SEDVGVKVERPAEDAEPKVEMELVGA 441 Y +EDVGVKV+RPA++ + E++GA Sbjct: 235 YTAEDVGVKVDRPADETMVEEPTEIIGA 262
>sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=3 Length = 260
Score = 238 bits (606), Expect = 3e-62 Identities = 115/147 (78%), Positives = 134/147 (91%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 RKWQSLIEAHVDVKTTD+YTLR+FCI FTKKR NQ K+TCYAQ+SQIRQIR+KM EIMV Sbjct: 115 RKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVN 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 +AQSCDLKDLV KFIPE+IG+EIEKAT+ IYPLQN++IRKVKILKAPKFDLGKLMEVHGD Sbjct: 175 QAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
Query: 361 YSEDVGVKVERPAEDAEPKVEMELVGA 441 Y+ED+G K++RPAE+A + E++GA Sbjct: 235 YNEDIGTKLDRPAEEAVAE-PTEVIGA 260
>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2 Length = 262
Score = 229 bits (583), Expect = 1e-59 Identities = 114/149 (76%), Positives = 135/149 (90%), Gaps = 2/149 (1%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ+LIE+HVDVKTTDNYTLRLFCIAFTK+R NQ+K+TCYAQ+SQIRQIR KM EIM++ Sbjct: 115 KKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIK 174
Query: 181 E-AQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHG 357 E A SCDLK+LVAKFIPE+IGK+IEKAT GIYPLQN++IRKVKILKAPKFDL KLMEVHG Sbjct: 175 EEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHG 234
Query: 358 DY-SEDVGVKVERPAEDAEPKVEMELVGA 441 DY +EDVGVKV+RPA++ + E++GA Sbjct: 235 DYTAEDVGVKVDRPADEVVEE-PTEIIGA 262
>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2 Length = 262
Score = 228 bits (582), Expect = 2e-59 Identities = 106/136 (77%), Positives = 125/136 (91%), Gaps = 1/136 (0%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ+LIEAHVDVKTTD Y LRLFCI FTK+RPNQ+K+TCYAQ SQIRQIR+KM+EIM Sbjct: 115 KKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMAN 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 +A SCDLK+LV+KFIPE IGKEIEKAT+ I+PLQN+++RKVKILKAPKFDLGKLMEVHGD Sbjct: 175 QASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
Query: 361 YS-EDVGVKVERPAED 405 Y+ ED+G K++RPAED Sbjct: 235 YAKEDIGTKLDRPAED 250
>sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3 Length = 248
Score = 190 bits (483), Expect = 5e-48 Identities = 97/130 (74%), Positives = 114/130 (87%), Gaps = 1/130 (0%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 RKWQSLI+AHVDVKTTDNY +R+FCIAFTKKRPN + YAQ+SQI IR+KM EIMV+ Sbjct: 114 RKWQSLIQAHVDVKTTDNYQIRIFCIAFTKKRPNHTRNF-YAQSSQIA-IRRKMREIMVK 171
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEK-ATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHG 357 EAQ+CDLK+LVAKFIPE IGKEI++ + GIYPLQ+ +IRKVKILKAPKFDL KLMEVHG Sbjct: 172 EAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHG 231
Query: 358 DYSEDVGVKV 387 DY+E+VG K+ Sbjct: 232 DYNEEVGAKI 241
>sp|Q98TX2|RS3A_OPHHA 40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3 Length = 264
Score = 187 bits (474), Expect = 5e-47 Identities = 91/148 (61%), Positives = 116/148 (78%), Gaps = 7/148 (4%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ++IEAH+DVKTTD Y LRLFC+ FTKKR NQI+KT YAQ Q+RQIRKKM+EIM R Sbjct: 115 KKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTR 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 E Q+ DLK++V K IP++IGK+IEKA IYPL ++Y+RKVK+LK PKF+LGKLME+HG+ Sbjct: 175 EVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGE 234
Query: 361 -------YSEDVGVKVERPAEDAEPKVE 423 ++ G KVER A+ EP V+ Sbjct: 235 GGGSGKPSGDETGAKVER-ADGYEPPVQ 261
>sp|Q642T2|RS3A_XENTR 40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3 Length = 264
Score = 186 bits (472), Expect = 9e-47 Identities = 92/148 (62%), Positives = 116/148 (78%), Gaps = 7/148 (4%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ++IEAHVDVKTTD Y LRLFC+ FTKKR NQI+KT YAQ Q+RQIRKKM+EIM R Sbjct: 115 KKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTR 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 E Q+ DLK++V K IP++IGK+IEKA IYPL ++Y+RKVK+LK PKF+LGKLME+HG+ Sbjct: 175 EVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGE 234
Query: 361 -------YSEDVGVKVERPAEDAEPKVE 423 ++ G KVER A+ EP V+ Sbjct: 235 GGGAGKPAGDETGAKVER-ADGYEPPVQ 261
>sp|Q801S3|RS3A_XENLA 40S ribosomal protein S3a OS=Xenopus laevis GN=rps3a PE=2 SV=3 Length = 264
Score = 186 bits (471), Expect = 1e-46 Identities = 92/148 (62%), Positives = 115/148 (77%), Gaps = 7/148 (4%) Frame = +1
Query: 1 RKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVR 180 +KWQ++IEAHVDVKTTD Y LRLFC+ FTKKR NQI+KT YAQ Q+RQIRKKM EIM R Sbjct: 115 KKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTR 174
Query: 181 EAQSCDLKDLVAKFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAPKFDLGKLMEVHGD 360 E Q+ DLK++V K IP++IGK+IEKA IYPL ++Y+RKVK+LK PKF+LGKLME+HG+ Sbjct: 175 EVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGE 234
Query: 361 -------YSEDVGVKVERPAEDAEPKVE 423 ++ G KVER A+ EP V+ Sbjct: 235 GGGTGKPAGDETGAKVER-ADGYEPPVQ 261
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNV8 |
Definition |
tr|A9NNV8|A9NNV8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
147 |
Score (bit) |
252.0 |
E-value |
2.0e-65 |
Report |
|