DK949875 |
Clone id |
TST38A01NGRL0007_C14 |
Library |
TST38 |
Length |
751 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_C14. 5' end sequence. |
Accession |
DK949875 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1340Contig1 |
Sequence |
GGTGACACTAGCGTACCAAATGTAGAGAAAGTGAATGCGGAACTTTTTACGCTCACCTAT GGTGCCATCGTTCGGCAGCTTCTCACCGATTTTGAGGAAGTGGATGAAGTCAACAAACAG CTGGATCTCATGGGCTATCATATAGGTATAAGGTTGATTGACGATTTCCTCTCAAAATCA AATGTTACAAGATGTTCAGAGTTTAAGGAGACAGCAGAAGTAATTGCCAAGGTGGGTTTC AAAATGTTTCTGGGAGTAACTGCTACGGTCGCAAACTGGGATGCTGAGGGCACCGAATGT AGTCTAACTCTGGATGATAACCCCCTGGTTGATTTTGTAGAGCTGCCTGAGACTTGCCAG GGTCTCCACTATTGCAATGTGTTGTGTGGGGTTATCAGAGGAGCTCTTGAAATGGTAAAC ATGCGAACAGAGGTCAGGTGGGTCCGAGATGTGCTTCGTGGAGACGATGCTTATGAAATG CGCCTGAAACTTCTGAAGCAGGTGGCAGAAGAGTACCCCTACAAAGACGATGAATAGAAG TGCCACCTAAAAAGGTTTTAAACAGTTAGTTTCTGTGATAGATGTAACATTTCTTTTGGG CATCGCTCTGAAAAGTTGATTTTCTGGATATAGCTGCTGATGAAAGCATCGGCTGCTTTA AAGTTCTAATACTGAAAACAAATTTCTCTCAACAGTAAAGTACTAATTGTGGGGAGTAAT AATATTGTTTGTTTAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5ZI57 |
Definition |
sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus |
Align length |
165 |
Score (bit) |
206.0 |
E-value |
8.0e-53 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949875|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_C14, 5' (734 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subun... 206 8e-53 sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit... 203 7e-52 sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subun... 203 7e-52 sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subun... 202 2e-51 sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subun... 194 5e-49 sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=... 178 3e-44 sp|P36149|BET3_YEAST Transport protein particle 22 kDa subunit O... 165 2e-40 sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subun... 163 1e-39 sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subun... 162 2e-39 sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle comp... 119 2e-26 sp|P34605|TPPC3_CAEEL Probable trafficking protein particle comp... 118 3e-26 sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subun... 39 0.029 sp|B0Z4R9|YCF2_OENAR Protein ycf2 OS=Oenothera argillicola GN=yc... 32 2.7 sp|P48974|V1BR_RAT Vasopressin V1b receptor OS=Rattus norvegicus... 32 2.7 sp|Q9MEF2|YCF2_OENEH Protein ycf2 OS=Oenothera elata subsp. hook... 32 3.6 sp|B0Z503|YCF2_OENBI Protein ycf2 OS=Oenothera biennis GN=ycf2-A... 32 3.6 sp|P32345|PP4C_YEAST Serine/threonine-protein phosphatase 4 cata... 32 4.7 sp|Q9MSS8|MATK_SEQSE Maturase K OS=Sequoia sempervirens GN=matK ... 32 4.7 sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subun... 31 6.1 sp|Q8RFE4|COAX_FUSNN Type III pantothenate kinase OS=Fusobacteri... 31 6.1
>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1 Length = 180
Score = 206 bits (525), Expect = 8e-53 Identities = 94/165 (56%), Positives = 131/165 (79%) Frame = +1
Query: 25 EKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRCSEF 204 +K+N+ELFTLTYGA+V QL D+E ++VNKQLD MGY+IG+RLI+DFL++SNV RC +F Sbjct: 12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 205 KETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVL 384 +ETA+VIAK+ FKM+LG+T ++ NW G E SL L++NPLVDFVELP+ L Y N+L Sbjct: 72 RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131
Query: 385 CGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYP 519 CGV+RGALEMV M +V++V+D L+GD E+R+K ++++ + P Sbjct: 132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176
>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1 Length = 180
Score = 203 bits (517), Expect = 7e-52 Identities = 93/165 (56%), Positives = 130/165 (78%) Frame = +1
Query: 25 EKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRCSEF 204 +K+++ELFTLTYGA+V QL D+E ++VNKQLD MGY+IG+RLI+DFL++SNV RC +F Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 205 KETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVL 384 +ETA+VIAKV FKM+LG+T ++ NW G E SL L++NPLVDFVELP+ L Y N+L Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131
Query: 385 CGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYP 519 CGV+RGALEMV M E ++V+D L+GD E+R++ ++++ + P Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1 Length = 180
Score = 203 bits (517), Expect = 7e-52 Identities = 93/165 (56%), Positives = 130/165 (78%) Frame = +1
Query: 25 EKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRCSEF 204 +K+++ELFTLTYGA+V QL D+E ++VNKQLD MGY+IG+RLI+DFL++SNV RC +F Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 205 KETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVL 384 +ETA+VIAKV FKM+LG+T ++ NW G E SL L++NPLVDFVELP+ L Y N+L Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131
Query: 385 CGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYP 519 CGV+RGALEMV M E ++V+D L+GD E+R++ ++++ + P Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1 Length = 180
Score = 202 bits (513), Expect = 2e-51 Identities = 92/165 (55%), Positives = 130/165 (78%) Frame = +1
Query: 25 EKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRCSEF 204 +K+++ELFTLTYGA+V QL D+E ++VNKQLD MG++IG+RLI+DFL++SNV RC +F Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71
Query: 205 KETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELPETCQGLHYCNVL 384 +ETA+VIAKV FKM+LG+T ++ NW G E SL L++NPLVDFVELP+ L Y N+L Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131
Query: 385 CGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYP 519 CGV+RGALEMV M E ++V+D L+GD E+R++ ++++ + P Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=1 Length = 186
Score = 194 bits (492), Expect = 5e-49 Identities = 95/174 (54%), Positives = 134/174 (77%), Gaps = 1/174 (0%) Frame = +1
Query: 1 GDTSVPNVEKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKS 180 G+ VEK+N+ELFTLTYGA+V QL+ D+E++++VN +L+ MGY+IGIRLI++FL+KS Sbjct: 9 GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68
Query: 181 NVTRCSEFKETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELPETCQ 360 + RCS+F ETAEVIAKVGFKMFLGV A V +WDA+ E LT++DNPL+DFVELP+ + Sbjct: 69 GIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDADRKEFHLTIEDNPLIDFVELPDQYK 128
Query: 361 -GLHYCNVLCGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYP 519 L+Y N+LCGV+RGALEMV M+ + +V+ L D E+++ L + +++ P Sbjct: 129 HKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182
>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe GN=bet3 PE=2 SV=1 Length = 183
Score = 178 bits (451), Expect = 3e-44 Identities = 92/178 (51%), Positives = 127/178 (71%), Gaps = 1/178 (0%) Frame = +1
Query: 1 GDTSVPNVEKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKS 180 G+ V+KVNAELF LTYG+IV QL D ++VN++LD MGY+IGIRLI+DFL+K+ Sbjct: 7 GEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLAKT 65
Query: 181 NVTRCSEFKETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELP-ETC 357 RC++F+ET E +AKVGFK+FL + +++ +G LTLDDNPL +FVELP + Sbjct: 66 EWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADAR 125
Query: 358 QGLHYCNVLCGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYPYKDD 531 Q L Y N+LCGVIRGALEM+ M + ++RD+LRGD+ E+R+ L + + EE P D+ Sbjct: 126 QKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183
>sp|P36149|BET3_YEAST Transport protein particle 22 kDa subunit OS=Saccharomyces cerevisiae GN=BET3 PE=1 SV=1 Length = 193
Score = 165 bits (418), Expect = 2e-40 Identities = 82/171 (47%), Positives = 119/171 (69%), Gaps = 2/171 (1%) Frame = +1
Query: 25 EKVNAELFTLTYGAIVRQLLTDFE-EVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRCSE 201 EK+N ELFTLTYG+IV QL D+E + ++VN L MGY+IG RLI+DFL+++ + RC Sbjct: 23 EKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCEN 82
Query: 202 FKETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELP-ETCQGLHYCN 378 +T+EV++K FK+FL +T + NW SL LD+NPL DFVELP + + L Y N Sbjct: 83 LVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSN 142
Query: 379 VLCGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEEYPYKDD 531 +LCGV++G+LEMV + +V +V D+LRGD E+++KL + + +E P +D Sbjct: 143 ILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1 Length = 181
Score = 163 bits (412), Expect = 1e-39 Identities = 81/167 (48%), Positives = 115/167 (68%), Gaps = 1/167 (0%) Frame = +1
Query: 16 PNVEKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRC 195 P K+N +LF LTYGA+V QL D+E+ ++VNK LD MGY+IG RL++DFL++S V RC Sbjct: 9 PEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRC 68
Query: 196 SEFKETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFV-ELPETCQGLHY 372 + E +IA+V FKM+LG+T +V ++ E SL L NPL +FV ELP L Y Sbjct: 69 HSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCY 128
Query: 373 CNVLCGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEE 513 CN+LCG+IRGALEMV++ V +++D L+GD E+ + LK++ E+ Sbjct: 129 CNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175
>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=2 SV=1 Length = 181
Score = 162 bits (409), Expect = 2e-39 Identities = 81/167 (48%), Positives = 117/167 (70%), Gaps = 1/167 (0%) Frame = +1
Query: 16 PNVEKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSKSNVTRC 195 P K+N +LF LTYGA+V QL D+E+ ++VN+ LD MGY IG RL++DFL++S V RC Sbjct: 9 PEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRC 68
Query: 196 SEFKETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFV-ELPETCQGLHY 372 + E ++IA+V FKM+LG+T +V ++ E SL L+ NPLV+FV ELP L Y Sbjct: 69 HSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCY 128
Query: 373 CNVLCGVIRGALEMVNMRTEVRWVRDVLRGDDAYEMRLKLLKQVAEE 513 CN+LCG+IRGALEMV++ +V +++D L+GD E+ + LK+ E+ Sbjct: 129 CNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175
>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1 Length = 181
Score = 119 bits (298), Expect = 2e-26 Identities = 59/137 (43%), Positives = 93/137 (67%), Gaps = 3/137 (2%) Frame = +1
Query: 25 EKVNAELFTLTYGAIVRQLLTDFEEVDEVNKQLDLMGYHIGIRLIDDFLSK-SNVTRCSE 201 +K++AELF LTYGA+V ++L D+E+ +V QLD MG+++G RL DDFL+K +NV RC + Sbjct: 13 KKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVD 72
Query: 202 FKETAEVIAKVGFKMFLGVTATVANWDAEGTECSLTLDDNPLVDFVELPE--TCQGLHYC 375 ++ A+V+ + +LGV+AT ++W + E +TL+ NPL + V++P GL Y Sbjct: 73 TRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYS 132
Query: 376 NVLCGVIRGALEMVNMR 426 ++ G IRGALE V+ + Sbjct: 133 QMIAGAIRGALEAVHFK 149
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NRG6 |
Definition |
tr|A9NRG6|A9NRG6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
178 |
Score (bit) |
312.0 |
E-value |
2.0e-83 |
Report |
|