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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949888
Clone id TST38A01NGRL0007_D03
Library
Length 589
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_D03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCCTGCTTGCCATGTCCATTCGAGAAGCTGTAGACTTTCGGCTGCACGAGCTCCAACAAC
TAGTATCAGAGCACTTGGTGGTGTTCTTGGCAACCTGAGGTCGCCGTAGCAACTGTTGTT
GGCGGACATACCTCTTAAAACGCTCTCTGTTGGTGACGCAAGAAAACCCCACACGGTGTT
GCTAGGTGAGGAGGCGAGAAGAAGGTCAAGAAGGAGAAAGGAAGCTCAGATAGAGACGCT
TGAGATCAGTTGGAACAAGGCGGTGGCTAGTGGCTCTCAGCGCATACCAGTTGGACGTAG
TAAGCGGTGGTGGTAGGACAACCCACAAGACGGGGTGCACAGATCGACAATCGCGCTGTA
GCAGTCGGTTAACAGCACCAGCGAACGACAGTATTCAATAATTGGACTCACTGGCGATGC
CTAACCTCTAACACGCCTTCAGAGGATCGGTCTCACTTGCAAACTCCGGCCAAGAAGTTC
AACCCGTTGTTGGCTAGGGGGCGTGAATATACGAGGGAATCTCAGGTGATCAATCTCGGC
ACAGAGCAGTGCTGACGGCGCCAGGAAATCTCGACGGTGTTGGGCGACC
■■Homology search results ■■ -
sp_hit_id Q674R7
Definition sp|Q674R7|ATG9B_HUMAN Autophagy-related protein 9B OS=Homo sapiens
Align length 29
Score (bit) 32.3
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949888|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_D03, 5'
         (589 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q674R7|ATG9B_HUMAN Autophagy-related protein 9B OS=Homo sapie...    32   1.8  

>sp|Q674R7|ATG9B_HUMAN Autophagy-related protein 9B OS=Homo sapiens
           GN=ATG9B PE=2 SV=1
          Length = 924

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 159 ASPTESVLRGMSANNSCYGDLRLPRTPPS 73
           A P  SVL+G  A+ SC+  L +P TPP+
Sbjct: 71  AGPPCSVLQGTGASQSCHSALPIPATPPT 99
tr_hit_id Q5NW61
Definition tr|Q5NW61|Q5NW61_AZOSE Transposase OS=Azoarcus sp. (strain EbN1)
Align length 72
Score (bit) 33.5
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949888|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_D03, 5'
         (589 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5NW61|Q5NW61_AZOSE Transposase OS=Azoarcus sp. (strain EbN1)...    33   9.2  

>tr|Q5NW61|Q5NW61_AZOSE Transposase OS=Azoarcus sp. (strain EbN1)
           GN=tnp2P14 PE=4 SV=1
          Length = 424

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 134 LKTLSVGDARKPHTVLLGEEAXXXXXXXKEAQIETLEISWNKAVASGSQR-IPVGRSKRW 310
           LK +S GD R+  TVLLG+EA           +  L+  W    A   +R +   R   W
Sbjct: 117 LKGISTGDMREALTVLLGDEAKGLSPNV----VSRLKTEWASDYAGWMKRDLSGSRYVYW 172

Query: 311 W*DNPQDGVHRS 346
           W     DGVH S
Sbjct: 173 W----ADGVHTS 180