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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949898
Clone id TST38A01NGRL0007_D13
Library
Length 681
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_D13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGAAAAGATGTCGGACCCCCCTCTTGCTTATCTATTTACGGATGCAACGTAAAAGTGGT
AATAAAAAGTAGATTTTTGAGAATATCTTCCCAAATAGGGATTTTTGCTGGAAATCAATG
TTTCCCATCCCAACCGGATTTGAGTTGTCTAAGCCACTTCTCCTTTTTCCAAATCAAATT
GAATTGAATAGCAATAATTATTGCTAAATATTTTACCTGAGATACGGGTAGACTTTGGGA
GTGGTTGAATAGCTACCTTGTCACATGGAGTTGATATCATACTTTTTTTTTTCTTTCTCT
GTTCCCCTTCTTCACTCAGTAAGGATAGAGAAATAAAGGATAAATAAATAGATTTGATTG
ATTACCAGCCTCGCTTCAGTTTGTAGGAACTTACATTCAGCGATCGTCGCTAAATACGTA
CTATCTGATGCTGATTTTGACAAATAGTTTCACATCAATTGATTGAAACGAGAGCTATTT
ATATATACCATACCATTTCAAAAACAGGCAGAGAATCTTTTCGACACTTAACTTAAATAT
ATTTGTCAAAATAGATAGATAAGATAGAGAAAAAATATCTATCTATTAAATTAAGGAGAA
GTAATGAATCTAGAAATAATCACACAACTCGTCGTACTCACACTTGTAGCTGCATCGGGA
CCGTTAGTAATTGCACTATTG
■■Homology search results ■■ -
sp_hit_id Q85FN5
Definition sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12 OS=Adiantum capillus-veneris
Align length 26
Score (bit) 49.3
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949898|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_D13, 5'
         (681 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf...    49   2e-05
sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf...    42   0.004
sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf...    42   0.004
sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf...    41   0.007
sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf...    40   0.012
sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf...    40   0.015
sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf...    38   0.044
sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf...    38   0.044
sp|Q19V96|YCF12_CHLAT Photosystem II reaction center protein ycf...    38   0.044
sp|Q9MS72|YCF12_LEPBU Photosystem II reaction center protein ycf...    37   0.075
sp|Q8M9Z7|YCF12_CHAGL Photosystem II reaction center protein ycf...    37   0.13 
sp|Q32RW9|YCF12_STAPU Photosystem II reaction center protein ycf...    36   0.17 
sp|P41600|YCF12_PINTH Photosystem II reaction center protein ycf...    36   0.17 
sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein ycf...    36   0.17 
sp|B0YPM6|YCF12_ANEMR Photosystem II reaction center protein ycf...    35   0.28 
sp|Q1KVW3|YCF12_SCEOB Photosystem II reaction center protein ycf...    35   0.37 
sp|Q9MS66|YCF12_EUGMU Photosystem II reaction center protein ycf...    35   0.37 
sp|P56328|YCF12_CHLVU Photosystem II reaction center protein ycf...    35   0.37 
sp|Q9MS60|YCF12_EUGSA Photosystem II reaction center protein ycf...    34   0.63 
sp|Q9MS63|YCF12_EUGMY Photosystem II reaction center protein ycf...    34   0.83 
sp|B2Y1W3|YCF12_WELMI Photosystem II reaction center protein ycf...    33   1.8  
sp|Q3ZJ17|YCF12_PSEAK Photosystem II reaction center protein ycf...    33   1.8  
sp|Q9MS69|YCF12_EUGDE Photosystem II reaction center protein ycf...    33   1.8  
sp|Q8WI31|YCF12_PSINU Photosystem II reaction center protein ycf...    32   2.4  
sp|Q0P3J9|YCF12_OSTTA Photosystem II reaction center protein ycf...    32   2.4  
sp|Q20EY4|YCF12_OLTVI Photosystem II reaction center protein ycf...    32   2.4  
sp|Q9MUS3|YCF12_MESVI Photosystem II reaction center protein ycf...    32   4.1  
sp|P50370|YCF12_CHLRE Photosystem II reaction center protein ycf...    31   5.4  
sp|P48256|YCF12_CYAPA Photosystem II reaction center protein ycf...    31   7.0  
sp|Q1ACL9|YCF12_CHAVU Photosystem II reaction center protein ycf...    31   7.0  

>sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12
           OS=Adiantum capillus-veneris GN=ycf12 PE=2 SV=1
          Length = 33

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEIITQLVVLTLVAASGPLVIALL
Sbjct: 1   MNLEIITQLVVLTLVAASGPLVIALL 26


>sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf12
           OS=Marchantia polymorpha GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLE+I QL VL L+ ASGPLVIALL
Sbjct: 1   MNLEVIAQLTVLALIVASGPLVIALL 26


>sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf12
           OS=Anthoceros formosae GN=ycf12 PE=2 SV=1
          Length = 33

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEII QL VL L+ ASGPLVIALL
Sbjct: 1   MNLEIIAQLTVLALIIASGPLVIALL 26


>sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf12
           OS=Cycas taitungensis GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLE++ QL VLTL+  SGPLVIALL
Sbjct: 1   MNLEVLAQLTVLTLIVISGPLVIALL 26


>sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf12
           OS=Angiopteris evecta GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 40.0 bits (92), Expect = 0.012
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEI+ QL VL L+  SGPLVIALL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALL 26


>sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf12
           OS=Physcomitrella patens GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 39.7 bits (91), Expect = 0.015
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLE+I QL+ L L+  SGPLVIALL
Sbjct: 1   MNLEVIAQLIALALIVGSGPLVIALL 26


>sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf12
           OS=Zygnema circumcarinatum GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 38.1 bits (87), Expect = 0.044
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLE++ QL VL L+  SGPLVI LL
Sbjct: 1   MNLEVVAQLTVLALIVVSGPLVIGLL 26


>sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf12
           OS=Huperzia lucidula GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 38.1 bits (87), Expect = 0.044
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIAL 678
           MNLE+I QL VL L+  SGPLVIAL
Sbjct: 1   MNLEVIAQLTVLALIVISGPLVIAL 25


>sp|Q19V96|YCF12_CHLAT Photosystem II reaction center protein ycf12
           OS=Chlorokybus atmophyticus GN=ycf12 PE=3 SV=2
          Length = 33

 Score = 38.1 bits (87), Expect = 0.044
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLE+I QL VL+L+  SGPLVI LL
Sbjct: 1   MNLEVIAQLTVLSLIVLSGPLVIILL 26


>sp|Q9MS72|YCF12_LEPBU Photosystem II reaction center protein ycf12
           OS=Lepocinclis buetschlii GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 37.4 bits (85), Expect = 0.075
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MN+E+ITQL  L L+ ASGP+VI LL
Sbjct: 1   MNIELITQLASLILIVASGPIVIGLL 26
tr_hit_id B2BWV0
Definition tr|B2BWV0|B2BWV0_9FILI Hypothetical chloroplast RF12 OS=Hymenophyllum polyanthos
Align length 26
Score (bit) 41.6
E-value 0.048
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949898|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_D13, 5'
         (681 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2BWV0|B2BWV0_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    42   0.048
tr|B2BWU4|B2BWU4_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    41   0.062
tr|B2BWU2|B2BWU2_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    41   0.062
tr|B2BWT6|B2BWT6_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    41   0.062
tr|B2BWV6|B2BWV6_9FILI Hypothetical chloroplast RF12 OS=Polyphle...    40   0.11 
tr|B2BWS8|B2BWS8_9FILI Hypothetical chloroplast RF12 OS=Crepidom...    40   0.11 
tr|B2BWS4|B2BWS4_9FILI Hypothetical chloroplast RF12 OS=Crepidom...    40   0.11 
tr|B2BWR8|B2BWR8_9FILI Hypothetical chloroplast RF12 OS=Crepidom...    40   0.11 
tr|B2BWR4|B2BWR4_9FILI Hypothetical chloroplast RF12 OS=Crepidom...    40   0.11 
tr|B2BWR2|B2BWR2_9FILI Hypothetical chloroplast RF12 OS=Callisto...    40   0.11 
tr|B2BWR0|B2BWR0_9FILI Hypothetical chloroplast RF12 OS=Abrodict...    40   0.11 
tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1         40   0.14 
tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1          40   0.14 
tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4 SV=1    40   0.14 
tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1        40   0.14 
tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1      40   0.14 
tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1       40   0.14 
tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4 SV=1     40   0.14 
tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4 SV=1     40   0.14 
tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1        40   0.14 
tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1        40   0.14 
tr|B3U077|B3U077_ANGEV Ycf12 OS=Angiopteris evecta PE=4 SV=1           40   0.14 
tr|B3U073|B3U073_9FILI Ycf12 OS=Marattia purpurascens PE=4 SV=1        40   0.14 
tr|B3U053|B3U053_9FILI Ycf12 OS=Marattia smithii PE=4 SV=1             40   0.14 
tr|B3U023|B3U023_9FILI Ycf12 OS=Marattia kaulfussii PE=4 SV=1          40   0.14 
tr|B3U020|B3U020_9FILI Ycf12 OS=Marattia laevis PE=4 SV=1              40   0.14 
tr|B3U016|B3U016_9FILI Ycf12 OS=Christensenia aesculifolia PE=4 ...    40   0.14 
tr|B3U014|B3U014_9FILI Ycf12 OS=Danaea wendlandii PE=4 SV=1            40   0.14 
tr|B3U008|B3U008_9FILI Ycf12 OS=Danaea nodosa PE=4 SV=1                40   0.14 
tr|B3U006|B3U006_9FILI Ycf12 OS=Danaea leprieurii PE=4 SV=1            40   0.14 

>tr|B2BWV0|B2BWV0_9FILI Hypothetical chloroplast RF12
           OS=Hymenophyllum polyanthos GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 41.6 bits (96), Expect = 0.048
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEII QL VL L+ ASGPLVIALL
Sbjct: 1   MNLEIIAQLFVLALIVASGPLVIALL 26


>tr|B2BWU4|B2BWU4_9FILI Hypothetical chloroplast RF12
           OS=Hymenophyllum pallidum GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 41.2 bits (95), Expect = 0.062
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEII QL VL L+ ASGPLVIALL
Sbjct: 1   MNLEIIAQLSVLALIVASGPLVIALL 26


>tr|B2BWU2|B2BWU2_9FILI Hypothetical chloroplast RF12
           OS=Hymenophyllum flabellatum GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 41.2 bits (95), Expect = 0.062
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEII QL VL L+ ASGPLVIALL
Sbjct: 1   MNLEIIAQLSVLALIVASGPLVIALL 26


>tr|B2BWT6|B2BWT6_9FILI Hypothetical chloroplast RF12
           OS=Hymenophyllum digitatum GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 41.2 bits (95), Expect = 0.062
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEII QL VL L+ ASGPLVIALL
Sbjct: 1   MNLEIIAQLSVLALIVASGPLVIALL 26


>tr|B2BWV6|B2BWV6_9FILI Hypothetical chloroplast RF12
           OS=Polyphlebium borbonicum GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIALL 681
           MNLEII QL VL L+  SGPLVIALL
Sbjct: 1   MNLEIIAQLTVLALIVVSGPLVIALL 26


>tr|B2BWS8|B2BWS8_9FILI Hypothetical chloroplast RF12
           OS=Crepidomanes minutum GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIAL 678
           MNLEII QL VL L+ ASGPLVIAL
Sbjct: 1   MNLEIIAQLTVLALIVASGPLVIAL 25


>tr|B2BWS4|B2BWS4_9FILI Hypothetical chloroplast RF12
           OS=Crepidomanes kurzii GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIAL 678
           MNLEII QL VL L+ ASGPLVIAL
Sbjct: 1   MNLEIIAQLTVLALIVASGPLVIAL 25


>tr|B2BWR8|B2BWR8_9FILI Hypothetical chloroplast RF12
           OS=Crepidomanes humile GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIAL 678
           MNLEII QL VL L+ ASGPLVIAL
Sbjct: 1   MNLEIIAQLTVLALIVASGPLVIAL 25


>tr|B2BWR4|B2BWR4_9FILI Hypothetical chloroplast RF12
           OS=Crepidomanes bipunctatum GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIAL 678
           MNLEII QL VL L+ ASGPLVIAL
Sbjct: 1   MNLEIIAQLTVLALIVASGPLVIAL 25


>tr|B2BWR2|B2BWR2_9FILI Hypothetical chloroplast RF12
           OS=Callistopteris apiifolia GN=ycf12 PE=4 SV=1
          Length = 33

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 604 MNLEIITQLVVLTLVAASGPLVIAL 678
           MNLEII QL VL L+ ASGPLVIAL
Sbjct: 1   MNLEIIAQLTVLALIVASGPLVIAL 25