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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949915
Clone id TST38A01NGRL0007_E06
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_E06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ACTTCAATGACCCTAGCATTATAGCAGATGTCAGCTGCGGTTTGGGTGAAGCTATGGTGG
GTATCAATCTTAATGACAAGAAAGTTGAGCGCTTTGCTGCAAGGTCTGATTAATGTGGAG
AATGGATTCGTACAAATGCTGTATGTGTTGTGTGTCACTACGGGTGAGGCATCCGAGGCT
TGTGTTCAAGCCCTTGTTGTTCAGCAAGTTGTTATGGTAGATAGTACTTTAGTTCACTTA
GAACTCTTTGTCTGATTGCCTTTGGTTATTGGCAGTGCTGGTAGACCATTTAACGGAACC
ATTCATTCTCACTCCAGCAGAACCTGAGCAACCTGGGAACATGGAAACTGGAATTGTAAT
GCTTACAACAGAAAATATAAATAAGCTTTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q39963
Definition sp|Q39963|PDX1_HEVBR Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis
Align length 36
Score (bit) 63.2
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949915|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_E06, 5'
         (394 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39963|PDX1_HEVBR Probable pyridoxal biosynthesis protein PDX...    63   4e-10
sp|Q8L940|PDX13_ARATH Pyridoxal biosynthesis protein PDX1.3 OS=A...    60   3e-09
sp|Q9AT63|PDX1_GINBI Probable pyridoxal biosynthesis protein PDX...    59   8e-09
sp|Q69LA6|PDX11_ORYSJ Probable pyridoxal biosynthesis protein PD...    59   1e-08
sp|Q9FT25|PDX1_PHAVU Pyridoxal biosynthesis protein PDX1 OS=Phas...    58   1e-08
sp|Q8W3D0|PDX12_ORYSJ Probable pyridoxal biosynthesis protein PD...    55   1e-07
sp|O80448|PDX11_ARATH Pyridoxal biosynthesis protein PDX1.1 OS=A...    53   5e-07
sp|P82134|PDXS_CORGL Pyridoxal biosynthesis lyase pdxS OS=Coryne...    45   1e-04
sp|A9WFT9|PDXS_CHLAA Pyridoxal biosynthesis lyase pdxS OS=Chloro...    44   3e-04
sp|Q8FPJ9|PDXS_COREF Pyridoxal biosynthesis lyase pdxS OS=Coryne...    40   0.004
sp|Q5SKD9|PDXS_THET8 Pyridoxal biosynthesis lyase pdxS OS=Thermu...    39   0.006
sp|Q72KG1|PDXS_THET2 Pyridoxal biosynthesis lyase pdxS OS=Thermu...    39   0.006
sp|Q6AFB9|PDXS_LEIXX Pyridoxal biosynthesis lyase pdxS OS=Leifso...    39   0.006
sp|O59905|PDX1_CERNC Pyridoxine biosynthesis protein PDX1 OS=Cer...    39   0.006
sp|Q9UW83|PDX1_EMENI Pyridoxine biosynthesis protein pyroA OS=Em...    39   0.008
sp|P60796|PDXS_MYCTU Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    39   0.011
sp|A5U5V7|PDXS_MYCTA Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    39   0.011
sp|A1KLV6|PDXS_MYCBP Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    39   0.011
sp|P60795|PDXS_MYCBO Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    39   0.011
sp|Q9L286|PDXS_STRCO Pyridoxal biosynthesis lyase pdxS OS=Strept...    38   0.014
sp|Q827U0|PDXS_STRAW Pyridoxal biosynthesis lyase pdxS OS=Strept...    38   0.014
sp|P60800|PDXS_CORDI Pyridoxal biosynthesis lyase pdxS OS=Coryne...    38   0.014
sp|Q6A948|PDXS_PROAC Pyridoxal biosynthesis lyase pdxS OS=Propio...    38   0.018
sp|Q73WF0|PDXS_MYCPA Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    37   0.024
sp|A0QIC8|PDXS_MYCA1 Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    37   0.024
sp|Q8RDP7|PDXS_FUSNN Pyridoxal biosynthesis lyase pdxS OS=Fusoba...    37   0.024
sp|A5UY94|PDXS_ROSS1 Pyridoxal biosynthesis lyase pdxS OS=Roseif...    37   0.031
sp|A7NQB8|PDXS_ROSCS Pyridoxal biosynthesis lyase pdxS OS=Roseif...    37   0.040
sp|Q5YTD8|PDXS_NOCFA Pyridoxal biosynthesis lyase pdxS OS=Nocard...    37   0.040
sp|A0QWG8|PDXS_MYCS2 Pyridoxal biosynthesis lyase pdxS OS=Mycoba...    37   0.040

>sp|Q39963|PDX1_HEVBR Probable pyridoxal biosynthesis protein PDX1
           OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1
          Length = 309

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 34/36 (94%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP ++A+VSCGLGEAMVGINLNDKKVERFA RS+
Sbjct: 274 YSDPDMLAEVSCGLGEAMVGINLNDKKVERFANRSE 309


>sp|Q8L940|PDX13_ARATH Pyridoxal biosynthesis protein PDX1.3
           OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2
          Length = 309

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP ++ +VSCGLGEAMVGINLND+KVERFA RS+
Sbjct: 274 YSDPEMLVEVSCGLGEAMVGINLNDEKVERFANRSE 309


>sp|Q9AT63|PDX1_GINBI Probable pyridoxal biosynthesis protein PDX1
           OS=Ginkgo biloba GN=PDX1 PE=2 SV=1
          Length = 309

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           +NDP I+A+VSC LGEAMVGINL D+KVER+A RS+
Sbjct: 274 YNDPHILAEVSCSLGEAMVGINLKDEKVERYAERSE 309


>sp|Q69LA6|PDX11_ORYSJ Probable pyridoxal biosynthesis protein
           PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2
           SV=1
          Length = 318

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP I+A+VS GLGEAMVGINL+D KVERFAARS+
Sbjct: 283 YSDPKILAEVSSGLGEAMVGINLSDPKVERFAARSE 318


>sp|Q9FT25|PDX1_PHAVU Pyridoxal biosynthesis protein PDX1
           OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1
          Length = 312

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP I+A+VSCGLGEAMVGINL+D  VERFA RS+
Sbjct: 277 YSDPEILAEVSCGLGEAMVGINLSDTNVERFANRSE 312


>sp|Q8W3D0|PDX12_ORYSJ Probable pyridoxal biosynthesis protein
           PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2
           SV=1
          Length = 313

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/38 (73%), Positives = 33/38 (86%), Gaps = 2/38 (5%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKK--VERFAARSD 110
           ++DP I+A+VS GLGEAMVGINL+D K  VERFAARSD
Sbjct: 276 YSDPKILAEVSSGLGEAMVGINLSDPKIHVERFAARSD 313


>sp|O80448|PDX11_ARATH Pyridoxal biosynthesis protein PDX1.1
           OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1
          Length = 309

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 24/36 (66%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           + D +++A+VSCGLGEAMVG+NL+D KVERFA+RS+
Sbjct: 275 YRDAAVLAEVSCGLGEAMVGLNLDD-KVERFASRSE 309


>sp|P82134|PDXS_CORGL Pyridoxal biosynthesis lyase pdxS
           OS=Corynebacterium glutamicum GN=pdxS PE=1 SV=2
          Length = 317

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLND 77
           F+DPS+IADVS GLGEAMVGIN++D
Sbjct: 281 FDDPSVIADVSRGLGEAMVGINVSD 305


>sp|A9WFT9|PDXS_CHLAA Pyridoxal biosynthesis lyase pdxS
           OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
           / J-10-fl) GN=pdxS PE=3 SV=1
          Length = 293

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAAR 104
           +NDP IIA+VS GLGEAMVGIN++    ++  AR
Sbjct: 257 YNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290


>sp|Q8FPJ9|PDXS_COREF Pyridoxal biosynthesis lyase pdxS
           OS=Corynebacterium efficiens GN=pdxS PE=3 SV=1
          Length = 297

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKV-ERFAAR 104
           +NDP  IA VS GLGEAMVGIN++D  V  R A R
Sbjct: 261 YNDPDTIARVSRGLGEAMVGINVDDLPVSHRLAER 295
tr_hit_id B4FRZ2
Definition tr|B4FRZ2|B4FRZ2_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 36
Score (bit) 61.2
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949915|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_E06, 5'
         (394 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FRZ2|B4FRZ2_MAIZE Putative uncharacterized protein OS=Zea m...    61   2e-08
tr|B4FQA2|B4FQA2_MAIZE Putative uncharacterized protein OS=Zea m...    61   2e-08
tr|A7NYE9|A7NYE9_VITVI Chromosome chr6 scaffold_3, whole genome ...    60   4e-08
tr|B6SJQ3|B6SJQ3_MAIZE Putative uncharacterized protein OS=Zea m...    60   5e-08
tr|Q45FF0|Q45FF0_SOYBN Pyridoxine biosynthesis protein OS=Glycin...    60   7e-08
tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein OS=Lotus ...    59   2e-07
tr|B7E5L2|B7E5L2_ORYSJ cDNA clone:006-203-B11, full insert seque...    59   2e-07
tr|A3BFP4|A3BFP4_ORYSJ Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|Q45FF2|Q45FF2_MEDTR Pyridoxine biosynthesis protein OS=Medica...    57   5e-07
tr|Q3S861|Q3S861_WHEAT Pyridoxine biosynthesis protein OS=Tritic...    56   1e-06
tr|A9RLD0|A9RLD0_PHYPA Predicted protein OS=Physcomitrella paten...    55   1e-06
tr|B7E4V8|B7E4V8_ORYSJ cDNA clone:001-007-G11, full insert seque...    55   2e-06
tr|B2BGT9|B2BGT9_OLEEU Putative SNZ1 protein (Fragment) OS=Olea ...    55   2e-06
tr|A3C1S6|A3C1S6_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A9S7G3|A9S7G3_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|Q6QND3|Q6QND3_TOBAC Putative pyridoxine biosynthesis protein ...    54   5e-06
tr|A9TWQ5|A9TWQ5_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A9TIQ8|A9TIQ8_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|Q5K5B3|Q5K5B3_ORYSA Putative ethylene-responsive factor (Frag...    45   0.002
tr|A4QCC3|A4QCC3_CORGB Putative uncharacterized protein OS=Coryn...    45   0.002
tr|B8G663|B8G663_9CHLR Pyridoxine biosynthesis protein OS=Chloro...    45   0.002
tr|A4RTQ1|A4RTQ1_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.004
tr|B2QH76|B2QH76_9CHLR Pyridoxine biosynthesis protein OS=Chloro...    44   0.005
tr|A7BCM7|A7BCM7_9ACTO Putative uncharacterized protein OS=Actin...    44   0.005
tr|A8KZF1|A8KZF1_FRASN Pyridoxine biosynthesis protein OS=Franki...    43   0.007
tr|A4FB94|A4FB94_SACEN Putative pyridoxine biosynthesis protein ...    42   0.020
tr|Q01DD0|Q01DD0_OSTTA Sor-like protein (ISS) OS=Ostreococcus ta...    42   0.020
tr|B1VDJ3|B1VDJ3_CORU7 Putative pyridoxine biosynthesis protein ...    41   0.034
tr|Q0SAP6|Q0SAP6_RHOSR Pyridoxine biosynthesis protein OS=Rhodoc...    40   0.058
tr|Q0S1D6|Q0S1D6_RHOSR Pyridoxine biosynthesis protein OS=Rhodoc...    40   0.058

>tr|B4FRZ2|B4FRZ2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 317

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/36 (77%), Positives = 34/36 (94%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP+I+ADVS GLGEAMVGINLND KVER+AARS+
Sbjct: 282 YSDPTILADVSTGLGEAMVGINLNDPKVERYAARSE 317


>tr|B4FQA2|B4FQA2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 380

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/36 (77%), Positives = 34/36 (94%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP+I+ADVS GLGEAMVGINLND KVER+AARS+
Sbjct: 345 YSDPTILADVSTGLGEAMVGINLNDPKVERYAARSE 380


>tr|A7NYE9|A7NYE9_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024095001
           PE=4 SV=1
          Length = 197

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP ++A+VSCGLGEAMVGINLND KVER+A RS+
Sbjct: 162 YSDPDVLAEVSCGLGEAMVGINLNDDKVERYANRSE 197


>tr|B6SJQ3|B6SJQ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 317

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 27/36 (75%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP+I+ DVS GLGEAMVGINLND KVER+AARS+
Sbjct: 282 YSDPTILTDVSAGLGEAMVGINLNDPKVERYAARSE 317


>tr|Q45FF0|Q45FF0_SOYBN Pyridoxine biosynthesis protein OS=Glycine
           max PE=2 SV=1
          Length = 311

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP I+A+VSCGLGEAMVGINL D KVERFA RS+
Sbjct: 276 YSDPEILAEVSCGLGEAMVGINLTDDKVERFANRSE 311


>tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein OS=Lotus
           japonicus PE=2 SV=1
          Length = 310

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP ++A++SCGLGEAMVG+NLND  VERFA RS+
Sbjct: 275 YSDPGLLAEISCGLGEAMVGLNLNDSNVERFANRSE 310


>tr|B7E5L2|B7E5L2_ORYSJ cDNA clone:006-203-B11, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 318

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/36 (75%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP I+A+VS GLGEAMVGINL+D KVERFAARS+
Sbjct: 283 YSDPKILAEVSSGLGEAMVGINLSDPKVERFAARSE 318


>tr|A3BFP4|A3BFP4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021866 PE=4 SV=1
          Length = 298

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/36 (75%), Positives = 33/36 (91%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP I+A+VS GLGEAMVGINL+D KVERFAARS+
Sbjct: 263 YSDPKILAEVSSGLGEAMVGINLSDPKVERFAARSE 298


>tr|Q45FF2|Q45FF2_MEDTR Pyridoxine biosynthesis protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 314

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 25/36 (69%), Positives = 31/36 (86%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARSD 110
           ++DP I+A+VSCGLGEAMVG+NL D  VERFA RS+
Sbjct: 279 YSDPEILAEVSCGLGEAMVGLNLTDHNVERFANRSE 314


>tr|Q3S861|Q3S861_WHEAT Pyridoxine biosynthesis protein OS=Triticum
           aestivum PE=2 SV=1
          Length = 314

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +3

Query: 3   FNDPSIIADVSCGLGEAMVGINLNDKKVERFAARS 107
           ++DP I+A+VS GLGEAMVGINL+D  VERFAARS
Sbjct: 279 YSDPEILANVSAGLGEAMVGINLSDPNVERFAARS 313