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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949941
Clone id TST38A01NGRL0007_F08
Library
Length 446
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_F08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCAATTGTGCGCGCGCGCCTGGGTCTCAGCAGATGGGTGGAGGCAATGGACAAAAAGCA
AAAATGGCTCGTGAGCGAGCCCAGGACAAGCTGAAGGGTTCCAAAGGTAGTCAGCTGGAA
TCCAACAAAAAGGCAATGTCAATACAATGCAAGGTGTGCATGCAGACATTTATGTGTACA
ACAAGTGAAGTGAAGTGTCGGGAGCATGCAGAGGCCAAGCATCCTAAGAATGATGTCTAT
CAGTGTTTTCCTCACCTGAAGCCCTAGAAGTGTCTTATGGTTTGTGAAGTGTTAAAGAGA
AGGAAGGGACAAGGTCTTTTTGTATTATTCCGCATCTTATAAAAGAACTGGTGTACATAA
GCTGGCCTGGGGGTCCAGATTTGCAGAAATATGGAATGCAAGCCTGAGTGTTTCCATTGA
CATTAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O64818
Definition sp|O64818|Y2309_ARATH Uncharacterized protein At2g23090 OS=Arabidopsis thaliana
Align length 77
Score (bit) 125.0
E-value 7.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949941|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_F08, 5'
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64818|Y2309_ARATH Uncharacterized protein At2g23090 OS=Arabi...   125   7e-29
sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT...    34   0.27 
sp|Q9LZR5|HDT3_ARATH Histone deacetylase HDT3 OS=Arabidopsis tha...    33   0.61 
sp|Q9FVE6|HDT1_ARATH Histone deacetylase HDT1 OS=Arabidopsis tha...    30   3.0  
sp|O88178|B3GT4_RAT Beta-1,3-galactosyltransferase 4 OS=Rattus n...    30   3.0  
sp|Q5EXX3|ZBT38_RAT Zinc finger and BTB domain-containing protei...    29   6.8  
sp|Q9YHZ6|CC45L_XENLA CDC45-related protein OS=Xenopus laevis GN...    29   8.8  

>sp|O64818|Y2309_ARATH Uncharacterized protein At2g23090
           OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1
          Length = 78

 Score =  125 bits (314), Expect = 7e-29
 Identities = 60/77 (77%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGS-KGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHA 210
           MGGGN QK+ MAR +  +K K + KGSQLE+NKKAMSIQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1   MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 211 EAKHPKNDVYQCFPHLK 261
           EAKHPK DV  CFPHLK
Sbjct: 61  EAKHPKADVVACFPHLK 77


>sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT2
           PE=1 SV=1
          Length = 303

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 19  PGSQQMGGGNGQKAKMARERAQDKLKGSKGSQLE-SNKKAMSIQCKVCMQTFMCTTSEVK 195
           P +Q+ GG  G         A+ K   +     E S K   S+ CK C +TF    SE+ 
Sbjct: 235 PPAQKTGGKKGATHVATPHPAKGKTPANNDKLTEKSPKSGGSVPCKSCSKTF---NSEMA 291

Query: 196 CREHAEAKH 222
            + H++AKH
Sbjct: 292 LQAHSKAKH 300


>sp|Q9LZR5|HDT3_ARATH Histone deacetylase HDT3 OS=Arabidopsis
           thaliana GN=HDT3 PE=1 SV=2
          Length = 294

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 58  AKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAEAKH 222
           +K A + +     G    Q ++ K A +  CK C +TF   TSE+  + H +AKH
Sbjct: 239 SKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTF---TSEMGLQSHTKAKH 290


>sp|Q9FVE6|HDT1_ARATH Histone deacetylase HDT1 OS=Arabidopsis
           thaliana GN=HDT1 PE=1 SV=1
          Length = 245

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 46  NGQKAKMA--RERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAEAK 219
           + +KAK+A   ++  +K KG K +  +S K A  + C  C +TF    S      H +AK
Sbjct: 185 SAKKAKVAVTPQKTDEKKKGGKAAN-QSPKSASQVSCGSCKKTF---NSGNALESHNKAK 240

Query: 220 H 222
           H
Sbjct: 241 H 241


>sp|O88178|B3GT4_RAT Beta-1,3-galactosyltransferase 4 OS=Rattus
           norvegicus GN=B3galt4 PE=2 SV=1
          Length = 371

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
 Frame = -1

Query: 217 WPLHAPD------TSLHLLYT*MSACTPCIVLTLPFCWIPADYLWNPSACPGLAHEPFLL 56
           W L  P        SL L     +  +P   L LP   IP     NP AC G    PFLL
Sbjct: 20  WTLFGPSGLGEELLSLSLASLLPAPASPGPPLALPRLLIP-----NPQACGGSGPPPFLL 74

Query: 55  FVHCLHPSAETQARA 11
            + C  P    Q  A
Sbjct: 75  ILVCTAPEHLNQRNA 89


>sp|Q5EXX3|ZBT38_RAT Zinc finger and BTB domain-containing protein 38
            OS=Rattus norvegicus GN=Zbtb38 PE=2 SV=1
          Length = 1203

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +1

Query: 10   ARAPGSQQMGGGNGQKAKMARER--------AQDKLKGSKGSQLESNKKAMSIQCKVC 159
            +R+P  ++       +A+M R R        A+ KL   K S+ E NK+   +QC++C
Sbjct: 937  SRSPVGRRRYPAELDRAEMGRRRYPAELDRCAEVKLPPDKASEEEENKEMPKLQCELC 994


>sp|Q9YHZ6|CC45L_XENLA CDC45-related protein OS=Xenopus laevis
           GN=cdc45l PE=2 SV=1
          Length = 567

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = +1

Query: 91  LKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCR 201
           ++G+   ++ SN  ++ + CK  +++F+C+T   +C+
Sbjct: 452 MEGTPDVKMFSNPISLCLLCKYLLKSFVCSTKNKRCK 488
tr_hit_id B6SIA6
Definition tr|B6SIA6|B6SIA6_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 76
Score (bit) 146.0
E-value 6.0e-34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949941|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_F08, 5'
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SIA6|B6SIA6_MAIZE Putative uncharacterized protein OS=Zea m...   146   6e-34
tr|A9PA34|A9PA34_POPTR Putative uncharacterized protein OS=Popul...   143   4e-33
tr|Q0H639|Q0H639_SORBI Putative uncharacterized protein OS=Sorgh...   143   5e-33
tr|B4UWA0|B4UWA0_ARAHY Putative uncharacterized protein OS=Arach...   143   5e-33
tr|A9NMR4|A9NMR4_PICSI Putative uncharacterized protein OS=Picea...   142   6e-33
tr|B6T0B0|B6T0B0_MAIZE Putative uncharacterized protein OS=Zea m...   141   1e-32
tr|B6ST26|B6ST26_MAIZE Putative uncharacterized protein OS=Zea m...   139   7e-32
tr|A9NJX4|A9NJX4_PICSI Putative uncharacterized protein OS=Picea...   138   1e-31
tr|A5C9I9|A5C9I9_VITVI Putative uncharacterized protein (Chromos...   137   3e-31
tr|Q8H387|Q8H387_ORYSJ Os07g0114300 protein OS=Oryza sativa subs...   135   8e-31
tr|A9S6M2|A9S6M2_PHYPA Predicted protein OS=Physcomitrella paten...   134   3e-30
tr|A2YHJ0|A2YHJ0_ORYSI Putative uncharacterized protein OS=Oryza...   134   3e-30
tr|Q9ZRV8|Q9ZRV8_CICAR Putative uncharacterized protein OS=Cicer...   133   5e-30
tr|A7PLM9|A7PLM9_VITVI Chromosome chr7 scaffold_20, whole genome...   132   1e-29
tr|A8HPM7|A8HPM7_CHLRE Predicted protein OS=Chlamydomonas reinha...    84   5e-15
tr|A4RZ85|A4RZ85_OSTLU Predicted protein OS=Ostreococcus lucimar...    83   8e-15
tr|A6MZL5|A6MZL5_ORYSI Putative uncharacterized protein (Fragmen...    80   4e-14
tr|Q553T6|Q553T6_DICDI Putative uncharacterized protein OS=Dicty...    67   3e-10
tr|Q8IEA2|Q8IEA2_PLAF7 Putative uncharacterized protein MAL13P1....    67   6e-10
tr|B6K9E6|B6K9E6_TOXGO Putative uncharacterized protein OS=Toxop...    67   6e-10
tr|B6HV14|B6HV14_PENCH Pc22g18670 protein OS=Penicillium chrysog...    67   6e-10
tr|Q851T2|Q851T2_ORYSJ Putative uncharacterized protein OSJNBa00...    65   2e-09
tr|A6MZM0|A6MZM0_ORYSI Putative uncharacterized protein (Fragmen...    65   2e-09
tr|A4RLD5|A4RLD5_MAGGR Predicted protein OS=Magnaporthe grisea G...    65   2e-09
tr|B6SLU1|B6SLU1_MAIZE Putative uncharacterized protein OS=Zea m...    64   3e-09
tr|Q5KLR0|Q5KLR0_CRYNE Putative uncharacterized protein OS=Crypt...    64   3e-09
tr|Q75KB8|Q75KB8_ORYSJ Expressed protein, having alternate splic...    64   4e-09
tr|B3LC25|B3LC25_PLAKH Putative uncharacterized protein OS=Plasm...    64   4e-09
tr|Q0DQW9|Q0DQW9_ORYSJ Os03g0439800 protein OS=Oryza sativa subs...    64   5e-09
tr|B6AID2|B6AID2_9CRYT Putative uncharacterized protein OS=Crypt...    63   8e-09

>tr|B6SIA6|B6SIA6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 77

 Score =  146 bits (368), Expect = 6e-34
 Identities = 67/76 (88%), Positives = 72/76 (94%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQK+KMARER  +K KG+KGSQLE+NKKAMSIQCKVCMQTFMCTT+EVKCREHAE
Sbjct: 1   MGGGNGQKSKMARERNLEKNKGAKGSQLETNKKAMSIQCKVCMQTFMCTTTEVKCREHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           AKHPK DVYQCFPHLK
Sbjct: 61  AKHPKTDVYQCFPHLK 76


>tr|A9PA34|A9PA34_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 78

 Score =  143 bits (361), Expect = 4e-33
 Identities = 69/77 (89%), Positives = 72/77 (93%), Gaps = 1/77 (1%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLK-GSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHA 210
           MGGGNGQKAKMARER  DK K GSKGSQLE+NKKAMSIQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1   MGGGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 211 EAKHPKNDVYQCFPHLK 261
           EAKHPK+DVY CFPHLK
Sbjct: 61  EAKHPKSDVYACFPHLK 77


>tr|Q0H639|Q0H639_SORBI Putative uncharacterized protein OS=Sorghum
           bicolor PE=4 SV=1
          Length = 77

 Score =  143 bits (360), Expect = 5e-33
 Identities = 63/76 (82%), Positives = 72/76 (94%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQK+KMARER  +K KGSKGSQLE+NKKAM+IQCK+CMQTF+CTTSE KC+EHAE
Sbjct: 1   MGGGNGQKSKMARERNAEKNKGSKGSQLETNKKAMNIQCKICMQTFICTTSEAKCKEHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           A+HPKND+YQCFPHLK
Sbjct: 61  ARHPKNDLYQCFPHLK 76


>tr|B4UWA0|B4UWA0_ARAHY Putative uncharacterized protein OS=Arachis
           hypogaea PE=4 SV=1
          Length = 77

 Score =  143 bits (360), Expect = 5e-33
 Identities = 66/76 (86%), Positives = 71/76 (93%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQKAKMARE+  +K K +KGSQL+SNKKAMSIQCKVCMQTFMCTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNLEKQKAAKGSQLDSNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           AKHPK+DVY CFPHLK
Sbjct: 61  AKHPKSDVYVCFPHLK 76


>tr|A9NMR4|A9NMR4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 77

 Score =  142 bits (359), Expect = 6e-33
 Identities = 66/76 (86%), Positives = 70/76 (92%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQKAKMARE+  +K K  KGSQLE+NKKAMSIQCKVCMQTF+CTTSEVKCREHAE
Sbjct: 1   MGGGNGQKAKMAREKNNEKNKAPKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           AKHPK DVYQCFPHLK
Sbjct: 61  AKHPKADVYQCFPHLK 76


>tr|B6T0B0|B6T0B0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 77

 Score =  141 bits (356), Expect = 1e-32
 Identities = 62/76 (81%), Positives = 71/76 (93%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQK+KMARER  +K KG KGSQLE+NKKAM+IQCK+CMQTF+CTTSE KC+EHAE
Sbjct: 1   MGGGNGQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           A+HPKND+YQCFPHLK
Sbjct: 61  ARHPKNDLYQCFPHLK 76


>tr|B6ST26|B6ST26_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 77

 Score =  139 bits (350), Expect = 7e-32
 Identities = 61/76 (80%), Positives = 70/76 (92%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGN QK+KMARER  +K KG KGSQLE+NKKAM+IQCK+CMQTF+CTTSE KC+EHAE
Sbjct: 1   MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           A+HPKND+YQCFPHLK
Sbjct: 61  ARHPKNDLYQCFPHLK 76


>tr|A9NJX4|A9NJX4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 77

 Score =  138 bits (348), Expect = 1e-31
 Identities = 62/76 (81%), Positives = 71/76 (93%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQKAK ARER  +K+K ++GSQLE+NKKAM+IQCKVCMQTF+CTT+EVKCREHAE
Sbjct: 1   MGGGNGQKAKTARERNLEKMKCARGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           AKHPK D+YQCFPHLK
Sbjct: 61  AKHPKADIYQCFPHLK 76


>tr|A5C9I9|A5C9I9_VITVI Putative uncharacterized protein (Chromosome
           chr18 scaffold_1, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00014938001 PE=4 SV=1
          Length = 78

 Score =  137 bits (344), Expect = 3e-31
 Identities = 64/77 (83%), Positives = 71/77 (92%), Gaps = 1/77 (1%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGS-KGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHA 210
           MGGGNGQK+KMARE+  +K K + +GSQLESNKKAMSIQCKVCMQTF+CTTSEVKCREHA
Sbjct: 1   MGGGNGQKSKMAREKNMEKQKNAARGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 211 EAKHPKNDVYQCFPHLK 261
           EAKHPK+DVY CFPHLK
Sbjct: 61  EAKHPKSDVYTCFPHLK 77


>tr|Q8H387|Q8H387_ORYSJ Os07g0114300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1513_F02.133 PE=4 SV=1
          Length = 77

 Score =  135 bits (341), Expect = 8e-31
 Identities = 60/76 (78%), Positives = 70/76 (92%)
 Frame = +1

Query: 34  MGGGNGQKAKMARERAQDKLKGSKGSQLESNKKAMSIQCKVCMQTFMCTTSEVKCREHAE 213
           MGGGNGQK+KMARER  +K KG+KGSQLE+NKKAM+IQCK+CMQTF+CTTSE KC+EHAE
Sbjct: 1   MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEHAE 60

Query: 214 AKHPKNDVYQCFPHLK 261
           AKHPK+D+  CFPHLK
Sbjct: 61  AKHPKSDLTACFPHLK 76