DK950022 |
Clone id |
TST38A01NGRL0007_I20 |
Library |
TST38 |
Length |
298 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_I20. 5' end sequence. |
Accession |
DK950022 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL27Contig1 |
Sequence |
GGCGCACCGGCAACGGTGGCGAGTGAGCTCAAGGCTGCTTCCATGGATGAGAATGACCTT TTGACAGAGGATGAGCCAACCTTCACCGCCAAGGTCTCCACCCCTGGCACCTACACCTAC TACTGCACCCCTCACAAGTCTGCTAACATGGTTGGTACCATCATTGTCAAGTGAATTACA TGACCCACCTCATACACAAATCCCCCTCTTCTGTGTTTTGTAGATGAGCCCCCCATTGTA CTCTTGCGCCCATATATTGAACTAAATTCGTTCAATTCAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7SIB8 |
Definition |
sp|Q7SIB8|PLAS_DRYCA Plastocyanin OS=Dryopteris crassirhizoma |
Align length |
57 |
Score (bit) |
104.0 |
E-value |
1.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950022|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_I20, 5' (278 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q7SIB8|PLAS_DRYCA Plastocyanin OS=Dryopteris crassirhizoma GN... 104 1e-22 sp|Q5N4W8|PLAS_SYNP6 Plastocyanin OS=Synechococcus sp. (strain A... 50 3e-06 sp|P55020|PLAS_SYNE7 Plastocyanin OS=Synechococcus elongatus (st... 50 3e-06 sp|P42699|PLAS2_ARATH Plastocyanin major isoform, chloroplastic ... 50 3e-06 sp|P00294|PLAS_CAPBU Plastocyanin OS=Capsella bursa-pastoris GN=... 50 3e-06 sp|P11970|PLAS2_POPNI Plastocyanin B, chloroplastic OS=Populus n... 50 3e-06 sp|P17340|PLAS_SOLLC Plastocyanin, chloroplastic OS=Solanum lyco... 49 8e-06 sp|P35477|PLAS2_TOBAC Plastocyanin B'/B'' OS=Nicotiana tabacum P... 49 8e-06 sp|P00288|PLAS_VICFA Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1 48 1e-05 sp|P21697|PLAS_SYNY3 Plastocyanin OS=Synechocystis sp. (strain P... 48 1e-05 sp|P00296|PLAS_SOLTU Plastocyanin OS=Solanum tuberosum GN=PETE P... 48 1e-05 sp|P00298|PLAS_RUMOB Plastocyanin OS=Rumex obtusifolius GN=PETE ... 48 1e-05 sp|P16002|PLAS_PEA Plastocyanin, chloroplastic OS=Pisum sativum ... 48 1e-05 sp|P00297|PLAS_SOLCR Plastocyanin OS=Solanum crispum GN=PETE PE=... 48 2e-05 sp|P00291|PLAS_SAMNI Plastocyanin OS=Sambucus nigra GN=PETE PE=1... 47 4e-05 sp|P00287|PLAS_PHAVU Plastocyanin OS=Phaseolus vulgaris GN=PETE ... 47 4e-05 sp|P00295|PLAS_MERPE Plastocyanin OS=Mercurialis perennis GN=PET... 47 4e-05 sp|P00299|PLAS1_POPNI Plastocyanin A, chloroplastic OS=Populus n... 47 4e-05 sp|P26956|PLAS_SCEOB Plastocyanin, chloroplastic OS=Scenedesmus ... 46 5e-05 sp|P50057|PLAS_PROHO Plastocyanin OS=Prochlorothrix hollandica G... 46 5e-05 sp|P00290|PLAS_LACSA Plastocyanin OS=Lactuca sativa GN=PETE PE=1... 46 5e-05 sp|P18068|PLAS_CHLRE Plastocyanin, chloroplastic OS=Chlamydomona... 46 5e-05 sp|P11490|PLAS1_ARATH Plastocyanin minor isoform, chloroplastic ... 46 5e-05 sp|O22646|PLAS_FRIAG Plastocyanin, chloroplastic OS=Fritillaria ... 46 7e-05 sp|P00300|PLAS_CHLFU Plastocyanin OS=Chlorella fusca GN=petE PE=... 46 7e-05 sp|P35476|PLAS1_TOBAC Plastocyanin A'/A'' OS=Nicotiana tabacum P... 46 7e-05 sp|P00289|PLAS_SPIOL Plastocyanin, chloroplastic OS=Spinacia ole... 45 9e-05 sp|P08248|PLAS_HORVU Plastocyanin, chloroplastic OS=Hordeum vulg... 45 9e-05 sp|Q9SXW9|PLAS_PHYPA Plastocyanin, chloroplastic OS=Physcomitrel... 44 3e-04 sp|Q0DFC9|PLAS_ORYSJ Plastocyanin, chloroplastic OS=Oryza sativa... 44 3e-04
>sp|Q7SIB8|PLAS_DRYCA Plastocyanin OS=Dryopteris crassirhizoma GN=PETE PE=1 SV=1 Length = 102
Score = 104 bits (260), Expect = 1e-22 Identities = 49/57 (85%), Positives = 53/57 (92%) Frame = +1
Query: 1 GAPATVASELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 GAP TVASELKAASMDENDLL+EDEP+F AKVSTPGTYT+YCTPHKSANM GT+ VK Sbjct: 46 GAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCTPHKSANMKGTLTVK 102
>sp|Q5N4W8|PLAS_SYNP6 Plastocyanin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petE PE=3 SV=1 Length = 125
Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/43 (51%), Positives = 26/43 (60%) Frame = +1
Query: 43 MDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 + DL TF A S PGTYTYYC PH+ A MVG I+V+ Sbjct: 83 LSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVVQ 125
>sp|P55020|PLAS_SYNE7 Plastocyanin OS=Synechococcus elongatus (strain PCC 7942) GN=petE PE=1 SV=1 Length = 125
Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/43 (51%), Positives = 26/43 (60%) Frame = +1
Query: 43 MDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 + DL TF A S PGTYTYYC PH+ A MVG I+V+ Sbjct: 83 LSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVVQ 125
>sp|P42699|PLAS2_ARATH Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2 Length = 167
Score = 50.4 bits (119), Expect = 3e-06 Identities = 21/43 (48%), Positives = 28/43 (65%) Frame = +1
Query: 40 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 SMDE DLL T+ ++ PGTY++YC PH+ A MVG + V Sbjct: 124 SMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTV 166
>sp|P00294|PLAS_CAPBU Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1 Length = 99
Score = 50.1 bits (118), Expect = 3e-06 Identities = 21/43 (48%), Positives = 28/43 (65%) Frame = +1
Query: 40 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 SMDENDLL T+ ++ GTY++YC PH+ A MVG + V Sbjct: 56 SMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTV 98
>sp|P11970|PLAS2_POPNI Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2 Length = 168
Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = +1
Query: 25 ELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 ++ SM E DLL TF +S G YT+YC+PH+ A MVG +IV Sbjct: 120 DVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIV 167
>sp|P17340|PLAS_SOLLC Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1 Length = 170
Score = 48.9 bits (115), Expect = 8e-06 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +1
Query: 40 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 SM E DLL T++ +S GTYT+YC PH+ A MVG + V Sbjct: 127 SMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTV 169
>sp|P35477|PLAS2_TOBAC Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1 Length = 99
Score = 48.9 bits (115), Expect = 8e-06 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = +1
Query: 40 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 SM E DLL T++ +S GTYT+YC PH+ A MVG + V Sbjct: 56 SMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTV 98
>sp|P00288|PLAS_VICFA Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1 Length = 99
Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +1
Query: 40 SMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 SM E DLL T++ K+ GTY +YC+PH+ A MVG + V Sbjct: 56 SMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTV 98
>sp|P21697|PLAS_SYNY3 Plastocyanin OS=Synechocystis sp. (strain PCC 6803) GN=petE PE=1 SV=1 Length = 126
Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = +1
Query: 34 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 AA + L +FT+ + PGTYTYYC PH+ A MVG ++V+ Sbjct: 81 AAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE 126
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8YB36 |
Definition |
tr|A8YB36|A8YB36_MICAE Genome sequencing data, contig C266 OS=Microcystis aeruginosa PCC 7806 |
Align length |
54 |
Score (bit) |
51.6 |
E-value |
2.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950022|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_I20, 5' (278 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8YB36|A8YB36_MICAE Genome sequencing data, contig C266 OS=Mi... 52 2e-05 tr|B4B8S2|B4B8S2_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7822 G... 51 3e-05 tr|B0JHN7|B0JHN7_MICAN Plastocyanin OS=Microcystis aeruginosa (s... 50 4e-05 tr|A9PJU8|A9PJU8_POPJC Putative uncharacterized protein OS=Popul... 50 6e-05 tr|A9PG34|A9PG34_POPTR Putative uncharacterized protein OS=Popul... 50 6e-05 tr|B7KAE8|B7KAE8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7424 G... 49 1e-04 tr|Q1EMM9|Q1EMM9_PLAMJ Plastocyanine (Fragment) OS=Plantago majo... 49 1e-04 tr|B7K170|B7K170_SYNP8 Plastocyanin OS=Synechococcus sp. (strain... 48 3e-04 tr|B4C3N8|B4C3N8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 8802 G... 48 3e-04 tr|Q1WLY5|Q1WLY5_CHLIN Chloroplast plastocyanin OS=Chlamydomonas... 48 3e-04 tr|A7D2K9|A7D2K9_9EURY Shikimate kinase OS=Halorubrum lacusprofu... 47 4e-04 tr|A3IMH3|A3IMH3_9CHRO Plastocyanin OS=Cyanothece sp. CCY 0110 G... 47 5e-04 tr|A7D3I9|A7D3I9_9EURY Blue (Type 1) copper domain protein OS=Ha... 47 5e-04 tr|Q4C0W9|Q4C0W9_CROWT Blue (Type 1) copper domain OS=Crocosphae... 47 6e-04 tr|A8JH68|A8JH68_CHLRE Plastocyanin, chloroplast OS=Chlamydomona... 46 8e-04 tr|Q6RUN5|Q6RUN5_TOBAC ERT10 (Fragment) OS=Nicotiana tabacum GN=... 46 0.001 tr|A9PK67|A9PK67_POPJC Putative uncharacterized protein OS=Popul... 46 0.001 tr|A9NL56|A9NL56_PICSI Putative uncharacterized protein OS=Picea... 45 0.001 tr|A7NVP7|A7NVP7_VITVI Chromosome chr18 scaffold_1, whole genome... 45 0.001 tr|A5ALX7|A5ALX7_VITVI Putative uncharacterized protein OS=Vitis... 45 0.001 tr|Q4R1A7|Q4R1A7_PEDDU Plastocyanin OS=Pediastrum duplex GN=Pcy ... 45 0.002 tr|B7FH62|B7FH62_MEDTR Putative uncharacterized protein OS=Medic... 45 0.002 tr|B4FCL1|B4FCL1_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002 tr|Q5V725|Q5V725_HALMA Halocyanin-like OS=Haloarcula marismortui... 45 0.002 tr|Q2JU60|Q2JU60_SYNJA Plastocyanin OS=Synechococcus sp. (strain... 45 0.002 tr|B6SSB9|B6SSB9_MAIZE Plastocyanin OS=Zea mays PE=2 SV=1 45 0.002 tr|B4G095|B4G095_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002 tr|A4S360|A4S360_OSTLU Plastocyanin, chloroplast OS=Ostreococcus... 45 0.002 tr|Q11IY5|Q11IY5_MESSB Blue (Type 1) copper domain OS=Mesorhizob... 44 0.004 tr|A1KYG6|A1KYG6_CYAA5 Plastocyanin OS=Cyanothece (strain ATCC 5... 44 0.004
>tr|A8YB36|A8YB36_MICAE Genome sequencing data, contig C266 OS=Microcystis aeruginosa PCC 7806 GN=IPF_5038 PE=4 SV=1 Length = 125
Score = 51.6 bits (122), Expect = 2e-05 Identities = 24/54 (44%), Positives = 31/54 (57%) Frame = +1
Query: 10 ATVASELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 +T E +AA + L +F + S PGTYTYYC PH+ A MVGTI V+ Sbjct: 72 STKVPEAQAAKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ 125
>tr|B4B8S2|B4B8S2_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_5017 PE=3 SV=1 Length = 127
Score = 50.8 bits (120), Expect = 3e-05 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = +1
Query: 10 ATVASELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 A V ++ A + L+ +FT PGTYTYYC PH+ A MVGTI V+ Sbjct: 74 AKVPGDVSATKISHKALVFAPGESFTTTFDQPGTYTYYCEPHRGAGMVGTITVE 127
>tr|B0JHN7|B0JHN7_MICAN Plastocyanin OS=Microcystis aeruginosa (strain NIES-843) GN=petE PE=4 SV=1 Length = 125
Score = 50.4 bits (119), Expect = 4e-05 Identities = 23/54 (42%), Positives = 31/54 (57%) Frame = +1
Query: 10 ATVASELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 +T E +A+ + L +F + S PGTYTYYC PH+ A MVGTI V+ Sbjct: 72 STKVPEAQASKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ 125
>tr|A9PJU8|A9PJU8_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 168
Score = 50.1 bits (118), Expect = 6e-05 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = +1
Query: 25 ELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 ++ SM E DLL TF +S G YT+YC+PH+ A MVG +IV Sbjct: 120 DVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIV 167
>tr|A9PG34|A9PG34_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 168
Score = 50.1 bits (118), Expect = 6e-05 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = +1
Query: 25 ELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIV 168 ++ SM E DLL TF +S G YT+YC+PH+ A MVG +IV Sbjct: 120 DVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIV 167
>tr|B7KAE8|B7KAE8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 7424 GN=PCC7424_4559 PE=3 SV=1 Length = 127
Score = 49.3 bits (116), Expect = 1e-04 Identities = 22/52 (42%), Positives = 28/52 (53%) Frame = +1
Query: 16 VASELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 V + A + L+ +FT PGTYTYYC PH+ A MVGTI V+ Sbjct: 76 VPDSVSATKISHKALVFSPGESFTTTFDEPGTYTYYCEPHRGAGMVGTITVE 127
>tr|Q1EMM9|Q1EMM9_PLAMJ Plastocyanine (Fragment) OS=Plantago major GN=pc1 PE=2 SV=1 Length = 191
Score = 48.9 bits (115), Expect = 1e-04 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = +1
Query: 34 AASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 A SM E D L + ++ ++ GTYT+YC PH+ A MVG + VK Sbjct: 146 AISMSEEDYLNAKDEVYSVTLTEKGTYTFYCAPHQGAGMVGKVTVK 191
>tr|B7K170|B7K170_SYNP8 Plastocyanin OS=Synechococcus sp. (strain PCC 8801 / RF-1) GN=PCC8801_2240 PE=3 SV=1 Length = 119
Score = 47.8 bits (112), Expect = 3e-04 Identities = 21/43 (48%), Positives = 25/43 (58%) Frame = +1
Query: 43 MDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 + D+ + F A S PG YTYYC PH+ A MVG IIVK Sbjct: 77 LSHKDMAFKAGEAFEATFSEPGEYTYYCAPHRGAGMVGKIIVK 119
>tr|B4C3N8|B4C3N8_9CHRO Plastocyanin OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_3655 PE=3 SV=1 Length = 119
Score = 47.8 bits (112), Expect = 3e-04 Identities = 21/43 (48%), Positives = 25/43 (58%) Frame = +1
Query: 43 MDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 + D+ + F A S PG YTYYC PH+ A MVG IIVK Sbjct: 77 LSHKDMAFKAGEAFEATFSEPGEYTYYCAPHRGAGMVGKIIVK 119
>tr|Q1WLY5|Q1WLY5_CHLIN Chloroplast plastocyanin OS=Chlamydomonas incerta GN=petE PE=2 SV=1 Length = 145
Score = 47.8 bits (112), Expect = 3e-04 Identities = 21/52 (40%), Positives = 32/52 (61%) Frame = +1
Query: 16 VASELKAASMDENDLLTEDEPTFTAKVSTPGTYTYYCTPHKSANMVGTIIVK 171 + S + A ++ +D L T++ K++T G Y YYC PH+ A MVG IIV+ Sbjct: 94 IPSGVNADAISRDDYLNAPGETYSLKLTTAGEYGYYCEPHQGAGMVGKIIVQ 145
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