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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950038
Clone id TST38A01NGRL0007_J13
Library
Length 699
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_J13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATTGTCTATCGCCGGCCTGCGTGGTAGAATCTCTCGGGTAGGACTGAAAGACGGTAGCTT
ACCCCGTGGCGGATGCCAGCGGTTCGAGTCCGCTTATCTCCAACCTGTGATTCAAGTCGA
TGGAATCTCACACACTAGTATTAGTATTACGGAAGAAGCTTGATACGCCGGTGAGGTGAG
CGGGGCACTTTGACCCACAACCAATTCCCTATGAACGTTGATAAAATCCCCGCATCGCAG
GTGGAGTAGCGCGTCGAGGTGGCGGAGGATTCGACGACGAAGTTCAAACGACAAAAGGCT
TGCGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGGCAAACGACGAAATGCTTC
GGGGAGCCGAAAATAGGTATAGATCCGGAGATTCCCGAATAGGTTAACCTTCCAAACTGC
CTGCTGAATTCAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACATCTTAGTAGCCGG
AGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGAGCCTAAA
CCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTG
AGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCA
ACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATC
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950038|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_J13, 5'
         (699 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   1.9  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 525 FHSPLLGESLLLFPPPATKMFQFAGLSL 442
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142
tr_hit_id B7YFX5
Definition tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geobacillus sp. Y412MC61
Align length 105
Score (bit) 80.1
E-value 4.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950038|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_J13, 5'
         (699 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    80   4e-15
tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    84   1e-14
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            59   2e-11
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen...    71   8e-11
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen...    71   8e-11
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    63   2e-08
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    45   2e-08
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    62   4e-08
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   3e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    55   6e-06
tr|Q6YSQ6|Q6YSQ6_BRANA Putative uncharacterized protein orf108a ...    55   6e-06
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    54   1e-05
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    54   1e-05
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    54   1e-05
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    54   1e-05
tr|A7QXA4|A7QXA4_VITVI Chromosome undetermined scaffold_217, who...    50   5e-05
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen...    49   2e-04
tr|B1SRT8|B1SRT8_9BACI Putative uncharacterized protein OS=Geoba...    35   0.002
tr|Q8TQC6|Q8TQC6_METAC Predicted protein OS=Methanosarcina aceti...    44   0.010
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    43   0.022
tr|A5BTC0|A5BTC0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.029
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    40   0.19 
tr|B2DWT6|B2DWT6_STRPN Putative uncharacterized protein OS=Strep...    36   2.1  
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    36   2.1  
tr|B1SBJ3|B1SBJ3_9STRE Putative uncharacterized protein OS=Strep...    35   6.0  

>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 80.1 bits (196), Expect(2) = 4e-15
 Identities = 53/105 (50%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
 Frame = -1

Query: 540 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAV------WKVNLFGNLRIY 379
           F LFPF SPLL ES LL  PP TKMFQF G +L    IQ  +      W V  FG+LRI 
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCALHALWIQAWILPHYGQW-VPPFGHLRIN 125

Query: 378 TYFRLPEAFRRLPRPSSSLGA*VSTASLLSFE-LRRRILRHLDAL 247
              +LPEAFRRLPRPSS+  A  ST        LR R+L ++  L
Sbjct: 126 ACLQLPEAFRRLPRPSSAPSAKASTVRPFQLNLLRSRLLPYVTRL 170



 Score = 25.4 bits (54), Expect(2) = 4e-15
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 697 FTRDFACPMLLGLERELAVLPATGLSPS 614
           F RD +CP +L +      +  TGLSPS
Sbjct: 8   FRRDSSCPAVLRIRSGGNEVSTTGLSPS 35


>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
           OS=Zea mays GN=orf121-a-ct PE=4 SV=1
          Length = 121

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 38/49 (77%), Positives = 44/49 (89%)
 Frame = +3

Query: 279 EVQTTKGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 425
           EVQ  KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPA
Sbjct: 58  EVQKRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPA 106


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 59.3 bits (142), Expect(2) = 2e-11
 Identities = 38/72 (52%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -1

Query: 543 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAVWKVNLFGNLRIYTYFRL 364
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C  IQQ +  +   G       F  
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 363 PE---AFRRLPR 337
           P+   A+  LPR
Sbjct: 105 PKHFVAYHALPR 116



 Score = 33.5 bits (75), Expect(2) = 2e-11
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -3

Query: 673 MLLGLERELAVLPATGLSPSGVQ 605
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23



 Score = 42.0 bits (97), Expect = 0.038
 Identities = 22/47 (46%), Positives = 24/47 (51%)
 Frame = -2

Query: 443 LSASEFSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYPP 303
           L+     +Q   LTY            PKHFV  HAL RLWVPRYPP
Sbjct: 78  LACPWIQQQLKGLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124


>tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 59

 Score = 70.9 bits (172), Expect = 8e-11
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = +3

Query: 294 KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 425
           KGLRWIPR+PE +KGVA+DEMLRG E ++RSGDS+IG P +LPA
Sbjct: 1   KGLRWIPRYPEMRKGVASDEMLRGVEIKHRSGDSQIGQPFELPA 44


>tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 56

 Score = 70.9 bits (172), Expect = 8e-11
 Identities = 31/41 (75%), Positives = 38/41 (92%)
 Frame = +3

Query: 303 RWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 425
           RWIPR+PET+KGVA+DEMLRG EN++RSGDS+IG P +LPA
Sbjct: 1   RWIPRYPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPA 41


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/51 (62%), Positives = 36/51 (70%)
 Frame = +3

Query: 528 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGH 680
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGH 52


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 44.7 bits (104), Expect(3) = 2e-08
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = -2

Query: 428 FSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYP 306
           F++QF RLTY            PKHFV  +AL RLWVPRYP
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAYYALSRLWVPRYP 348



 Score = 32.0 bits (71), Expect(3) = 2e-08
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 649 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 542
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309



 Score = 25.4 bits (54), Expect(3) = 2e-08
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 698 IHTGFCVPHAT 666
           IHTGF VPHAT
Sbjct: 262 IHTGFHVPHAT 272


>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010999001 PE=4 SV=1
          Length = 73

 Score = 62.0 bits (149), Expect = 4e-08
 Identities = 31/51 (60%), Positives = 36/51 (70%)
 Frame = +3

Query: 528 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGH 680
           G A  VKTGLWES++   LL EA ECCT DG+SPVA S  S  S+ +SMGH
Sbjct: 2   GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGH 52


>tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein
           OS=Heliobacterium modesticaldum (strain ATCC 51547 /
           Ice1) GN=Helmi_22600 PE=4 SV=1
          Length = 107

 Score = 48.9 bits (115), Expect(2) = 3e-06
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = -1

Query: 543 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLS 445
           RFRLFPF SPLL ES L+  PP T+MFQF GL+
Sbjct: 15  RFRLFPFRSPLLRESRLISFPPGTEMFQFPGLA 47



 Score = 26.6 bits (57), Expect(2) = 3e-06
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 353 FVVCHALLRLWVPRYPPQAFCRL 285
           F    ALLRL  PR+PP A   L
Sbjct: 83  FAAVRALLRLSAPRHPPYALTNL 105


>tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein
           OS=Marinitoga piezophila KA3 GN=MPKA3_1186 PE=4 SV=1
          Length = 182

 Score = 54.7 bits (130), Expect = 6e-06
 Identities = 36/81 (44%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = -1

Query: 540 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*-IQQAVWKVNLFGNLRIYTYFRL 364
           F L P  SPLLGES L+  P  T+MF F          +     +V+ FGN  I    RL
Sbjct: 100 FGLLPVRSPLLGESRLISFPRGTEMFHFPRYRTAFRRRVASTATQVSPFGNPGINACLRL 159

Query: 363 PEAFRRLPRPSSSLGA*VSTA 301
           P A+R LPRPSS   A  STA
Sbjct: 160 PRAYRSLPRPSSPPAAKASTA 180