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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950039
Clone id TST38A01NGRL0007_J14
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_J14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCGATTGATTAATTCTTATATTATGCATTATCCATTTGTGAAATCTATCGCATGCATGTA
ATTAGTGAGTGATTAATTCTTATTTATGCAACATCCATATGTTAATTATTAGCAATTGAT
TAAATCTTATTTAAGCAGTTTCCTTAAGCATTGACACTTGTGCTTGTGCATATGCATGCA
ATACTGTCCACATGGCCTCTTCTGCATGGCTGTCCTGCCCAGCAATTTTTAATTTTGTGG
ATGCCTTTTGTAAGGAGAGGCTGGGAACAACTCATTTTGTTTGATTCTTTTGATGATTGA
TAGGCAGCGCATATATTATTTAATTATTTGATTGGCTCCCGTGTCTGGCTTTGTACTGCC
GTTGGATGATATATCCATGTTCGATGTTCTTTTTGTACATTTTTATACAGCGTGTCTCCA
GCGCGCCAGCTAATAAAGCGTCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCTC
TTGTCTCCTCTTCTTGTCCGCCACCCCTCCTTTTTGTCCCTTTCTTGTAAAAACATTTGT
TGTAAATTTAGAAGGATCTTATTTCAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6PZE0
Definition sp|Q6PZE0|MUC19_MOUSE Mucin-19 OS=Mus musculus
Align length 60
Score (bit) 30.8
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950039|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_J14, 5'
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PZE0|MUC19_MOUSE Mucin-19 OS=Mus musculus GN=Muc19 PE=2 SV=2      31   4.8  
sp|P82765|LCR50_ARATH Putative low-molecular-weight cysteine-ric...    30   6.3  

>sp|Q6PZE0|MUC19_MOUSE Mucin-19 OS=Mus musculus GN=Muc19 PE=2 SV=2
          Length = 7524

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 314 ICAAYQSSKESNKMSCSQPLLTKGIHKIKNCWAGQPCRRGHVDSIACICTSTSVNA*GNC 135
           +C ++ +  E + MS SQ +L        N W   PC  G   S  C+   T   A  NC
Sbjct: 528 LCGSFNNKAEDDFMS-SQNILESTAQAFANSWEMMPCSEGSPSS--CVSIETEKFAESNC 584


>sp|P82765|LCR50_ARATH Putative low-molecular-weight cysteine-rich
           protein LCR50 OS=Arabidopsis thaliana GN=LCR50 PE=3 SV=1
          Length = 83

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 281 NKMSCSQPLLTKGI-HKIKNCWAGQPCRRGHVDSIACICTSTSVNA*GNCLN 129
           + + CS      GI  + K C+   PCR+G  D     C + S    G C+N
Sbjct: 20  SSVHCSDDTQGFGIKQEYKQCYTPDPCRKGGNDECERFCVAKSGLLYGKCIN 71
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950039|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_J14, 5'
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******