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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950051
Clone id TST38A01NGRL0007_K03
Library
Length 694
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_K03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCATTTTGCTTCGTGAGCAAATTTAGGTTGGCCATGGCGGAGTCCGGATCTGCAAGCAAC
AGCGGCACCCCACCTCCTTCCTTGTCTTCGTCTGCTGCAGTGCCACCTGACTGGGAGGTG
CTCACTATGTCCATGTCCGCTTCGGCTGTGGGAAAACCTGGCGACAGCGTGTCTGAGATT
TTTAACCCTCAGTTGGAGAATTCTTCCAACCCTAGTCTGGCTGAGGGTGATTTTTCTTCT
GGTATGTGGACGGACCCAAGTGCAAGTAGAGACGAGTCTTTCACAGCTGGCTGGAAACCC
CACCTTTCTGCTTCTTCAGATCTGTATGGATATGTTGCAGAACAAAAGCACCAAGAAGAT
CCGTCCTTGCCCAGTGAAGGTGCAGAGACTTATTTTGACAGCAATGCATCCATAAATATG
GCAGAGGGCTTGCTTGTGTCAGAAATTGTCGATGGAGATTTGGAAGAGAGAGTTCTTGCT
CATGACCTTTCTATGGATGGAGTCAAGACTAGTGATGAAGCCTTGAAAGATAAGGTCAAG
CGCAAAGGGCCCAAACGCCCCAATAGGTCTTCTACAGTTGTCTGGTCCGTTGCAGTAATA
GCTAGTGTGGTGGGAATTGTTTTCTTAGGAAATCGCTTGCGTCTTGCATATTATCAAAAT
CAAGAGCTTCAAATCCAGCTTTCAGTAAAGGACG
■■Homology search results ■■ -
sp_hit_id Q47BH8
Definition sp|Q47BH8|ILVC_DECAR Ketol-acid reductoisomerase OS=Dechloromonas aromatica (strain RCB)
Align length 114
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950051|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_K03, 5'
         (694 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q47BH8|ILVC_DECAR Ketol-acid reductoisomerase OS=Dechloromona...    33   1.1  
sp|P0A5F6|Y1866_MYCBO Uncharacterized protein Mb1866c OS=Mycobac...    33   1.9  
sp|P0A5F5|Y1835_MYCTU Uncharacterized protein Rv1835c/MT1883 OS=...    33   1.9  
sp|Q5RES4|MED1_PONAB Mediator of RNA polymerase II transcription...    32   2.5  
sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription...    32   2.5  
sp|P59900|EMIL3_MOUSE EMILIN-3 OS=Mus musculus GN=Emilin3 PE=2 SV=1    32   3.3  
sp|A5V3W3|ILVC_SPHWW Ketol-acid reductoisomerase OS=Sphingomonas...    32   4.2  
sp|Q0BS26|ILVC_GRABC Ketol-acid reductoisomerase OS=Granulibacte...    32   4.2  
sp|Q9NIV1|E2AK3_DROME Eukaryotic translation initiation factor 2...    32   4.2  
sp|A1KUZ8|ILVC_NEIMF Ketol-acid reductoisomerase OS=Neisseria me...    31   5.5  
sp|Q9JYI2|ILVC_NEIMB Ketol-acid reductoisomerase OS=Neisseria me...    31   5.5  
sp|Q9JTI3|ILVC_NEIMA Ketol-acid reductoisomerase OS=Neisseria me...    31   5.5  
sp|A9M177|ILVC_NEIM0 Ketol-acid reductoisomerase OS=Neisseria me...    31   5.5  
sp|Q5F7E5|ILVC_NEIG1 Ketol-acid reductoisomerase OS=Neisseria go...    31   5.5  
sp|Q2NAU8|ILVC_ERYLH Ketol-acid reductoisomerase OS=Erythrobacte...    31   5.5  
sp|Q7P0H9|ILVC_CHRVO Ketol-acid reductoisomerase OS=Chromobacter...    31   5.5  
sp|Q5UQP8|YL454_MIMIV Uncharacterized protein L454 OS=Acanthamoe...    31   5.5  
sp|Q30T61|ILVC_SULDN Ketol-acid reductoisomerase OS=Sulfurimonas...    31   7.2  
sp|Q6N869|ILVC_RHOPA Ketol-acid reductoisomerase OS=Rhodopseudom...    31   7.2  
sp|Q1MED4|ILVC_RHIL3 Ketol-acid reductoisomerase OS=Rhizobium le...    31   7.2  
sp|Q2K6M2|ILVC_RHIEC Ketol-acid reductoisomerase OS=Rhizobium et...    31   7.2  
sp|Q9WUZ9|ENTP5_MOUSE Ectonucleoside triphosphate diphosphohydro...    31   7.2  
sp|Q9KJ75|PTMCB_STRMU PTS system mannitol-specific EIICB compone...    31   7.2  
sp|A6UAW6|ILVC_SINMW Ketol-acid reductoisomerase OS=Sinorhizobiu...    30   9.4  
sp|Q2IUS3|ILVC_RHOP2 Ketol-acid reductoisomerase OS=Rhodopseudom...    30   9.4  
sp|Q52955|ILVC_RHIME Ketol-acid reductoisomerase OS=Rhizobium me...    30   9.4  
sp|A7HVZ2|ILVC_PARL1 Ketol-acid reductoisomerase OS=Parvibaculum...    30   9.4  
sp|P42229|STA5A_HUMAN Signal transducer and activator of transcr...    30   9.5  
sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C membe...    30   9.5  

>sp|Q47BH8|ILVC_DECAR Ketol-acid reductoisomerase OS=Dechloromonas
           aromatica (strain RCB) GN=ilvC PE=3 SV=1
          Length = 338

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
 Frame = -3

Query: 374 LGKDGSSWCFCSATYPYRSEEAERWGFQPAVK--DSSLLALGSVHIP----EEKSPSARL 213
           L KDG+SW    A      E A+      AVK  D  ++ L   +IP    EE +P+ + 
Sbjct: 46  LRKDGASWKKAEAAGLKVEEIAK------AVKGADVVMILLPDENIPQVYNEEVAPNLKK 99

Query: 212 GLEEFSN*GLKISDTLSPGFPTAEADMDIVSTSQSGGTAADEDKEGGGVPLLLA 51
           G       G  +    +   P A+ D+ +V+    G T   E  +GGGVP L+A
Sbjct: 100 GAALAFAHGFNVH--YNQVVPRADVDVIMVAPKGPGHTVRSEYLKGGGVPSLIA 151


>sp|P0A5F6|Y1866_MYCBO Uncharacterized protein Mb1866c
           OS=Mycobacterium bovis GN=Mb1866c PE=4 SV=1
          Length = 628

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 442 LTQASPLPYLWMHCCQNKSLHLHWARTDLLGAFVLQHIHTDLKKQKGGVSS 290
           LT A+ LP +       +SL L W    LLG   LQHI  D ++++  V+S
Sbjct: 52  LTSAARLPAILHQTRYYRSLQLRWPLRMLLGGKPLQHIAADKRRRRRFVAS 102


>sp|P0A5F5|Y1835_MYCTU Uncharacterized protein Rv1835c/MT1883
           OS=Mycobacterium tuberculosis GN=Rv1835c PE=4 SV=1
          Length = 628

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 442 LTQASPLPYLWMHCCQNKSLHLHWARTDLLGAFVLQHIHTDLKKQKGGVSS 290
           LT A+ LP +       +SL L W    LLG   LQHI  D ++++  V+S
Sbjct: 52  LTSAARLPAILHQTRYYRSLQLRWPLRMLLGGKPLQHIAADKRRRRRFVAS 102


>sp|Q5RES4|MED1_PONAB Mediator of RNA polymerase II transcription
            subunit 1 OS=Pongo abelii GN=MED1 PE=2 SV=1
          Length = 1581

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 154  KPGDSVSEIFNPQLENSSN--PSLAEGDFSSGMWTDPSASRDESFTAGWKPHLSASSDLY 327
            KPG+S  E   PQ+ +S N    L  G         PS S+  ++T     +L + S+  
Sbjct: 1412 KPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYT---PQNLDSESESG 1468

Query: 328  GYVAEQKHQEDPS 366
              +AE+ +Q  PS
Sbjct: 1469 SSIAEKSYQNSPS 1481


>sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription
            subunit 1 OS=Homo sapiens GN=MED1 PE=1 SV=4
          Length = 1581

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 154  KPGDSVSEIFNPQLENSSN--PSLAEGDFSSGMWTDPSASRDESFTAGWKPHLSASSDLY 327
            KPG+S  E   PQ+ +S N    L  G         PS S+  ++T     +L + S+  
Sbjct: 1412 KPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYT---PQNLDSESESG 1468

Query: 328  GYVAEQKHQEDPS 366
              +AE+ +Q  PS
Sbjct: 1469 SSIAEKSYQNSPS 1481


>sp|P59900|EMIL3_MOUSE EMILIN-3 OS=Mus musculus GN=Emilin3 PE=2 SV=1
          Length = 758

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 256 PSASRDESFTAGWKPHL--SASSDLYGYVAEQKHQEDPSLPSEGAETY 393
           PSASR   +T GW+P L       L  YV    H+    +  EGAE+Y
Sbjct: 33  PSASRYSLYTTGWRPRLRPGPHKSLCAYVV---HRNVTCVLQEGAESY 77


>sp|A5V3W3|ILVC_SPHWW Ketol-acid reductoisomerase OS=Sphingomonas
           wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ilvC
           PE=3 SV=1
          Length = 339

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 152 PTAEADMDIVSTSQSGGTAADEDKEGGGVPLLLADPDSAMAN 27
           P A+ D+ +++    G T   E + GGGVP L+A    A  N
Sbjct: 119 PRADIDVFMIAPKGPGHTVRSEYQRGGGVPCLIAIAQDASGN 160


>sp|Q0BS26|ILVC_GRABC Ketol-acid reductoisomerase OS=Granulibacter
           bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ilvC
           PE=3 SV=1
          Length = 339

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 25/84 (29%), Positives = 36/84 (42%)
 Frame = -3

Query: 278 DSSLLALGSVHIPEEKSPSARLGLEEFSN*GLKISDTLSPGFPTAEADMDIVSTSQSGGT 99
           D S   L   H+     P A L        GL I   L    P ++ D+ +++    G T
Sbjct: 83  DESQADLYREHLHANLRPGAALAFAH----GLNIHFNLIE--PRSDIDVFMIAPKGPGHT 136

Query: 98  AADEDKEGGGVPLLLADPDSAMAN 27
              E ++GGGVP L+A   +A  N
Sbjct: 137 VRGEYQKGGGVPCLVAVAQNASGN 160


>sp|Q9NIV1|E2AK3_DROME Eukaryotic translation initiation factor
           2-alpha kinase OS=Drosophila melanogaster GN=PEK PE=1
           SV=2
          Length = 1162

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +1

Query: 292 WKPHLSASSDLYGYVAEQKHQEDPSLPSEGAET-------YFDSNASINMAEGLLVSEIV 450
           WKP  ++S  L   V  +K QEDP + +EGA         Y D N ++     L  SE V
Sbjct: 410 WKPISASSKSL---VIFRKDQEDPEMIAEGAVAQGGELVPYDDENFAVAAQSVLNASEFV 466

Query: 451 DGD 459
           +G+
Sbjct: 467 NGN 469


>sp|A1KUZ8|ILVC_NEIMF Ketol-acid reductoisomerase OS=Neisseria
           meningitidis serogroup C / serotype 2a (strain ATCC
           700532 / FAM18) GN=ilvC PE=3 SV=1
          Length = 337

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 152 PTAEADMDIVSTSQSGGTAADEDKEGGGVPLLLA 51
           P A+ D+ +V+    G T   E K GGGVP L+A
Sbjct: 117 PRADLDVIMVAPKGPGHTVRSEYKRGGGVPSLIA 150
tr_hit_id B7G8I4
Definition tr|B7G8I4|B7G8I4_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 120
Score (bit) 38.1
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950051|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_K03, 5'
         (694 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7G8I4|B7G8I4_PHATR Predicted protein OS=Phaeodactylum tricor...    38   0.54 
tr|Q6MLN0|Q6MLN0_BDEBA Putative uncharacterized protein OS=Bdell...    37   1.2  
tr|B4LB61|B4LB61_DROVI GJ12813 OS=Drosophila virilis GN=GJ12813 ...    35   3.5  

>tr|B7G8I4|B7G8I4_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_48827 PE=4 SV=1
          Length = 341

 Score = 38.1 bits (87), Expect = 0.54
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
 Frame = +1

Query: 133 MSASAVGKPGDSVSEIFNPQLENSSNPSLAEGDF----SSGMWTDPSASRDESFTAGWKP 300
           ++AS  G+PG + S I N  L+N SNPS    D     S     DPS   D++     +P
Sbjct: 218 VNASTGGRPGSN-SSISNGALDNLSNPSAPSQDLPDSDSPSDSVDPSVDSDDN-----RP 271

Query: 301 HLSASSDLYGYVAEQKHQEDPSLPSEGAETYFDSNASINMAEGLLVSEIVDGDLEERVLA 480
               S D    + + +   D S+ S    T   +N  I  +   L SE+  G    +VL+
Sbjct: 272 D---SQDSVDSIDDTRDSRD-SVGSSNTATSTATNTEITTSASALTSEVSSGTFSTQVLS 327


>tr|Q6MLN0|Q6MLN0_BDEBA Putative uncharacterized protein
           OS=Bdellovibrio bacteriovorus GN=Bd1977 PE=4 SV=1
          Length = 488

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
 Frame = +1

Query: 253 DPSASRDESFTAGWKPHLSASSDLYGYVAEQK-----HQEDPSLPSEGAETYFDSN---- 405
           +P ++RD+++   +   L+A + L    AE+K     + + P++ +E  E   +      
Sbjct: 353 EPVSTRDQNWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAENGEEISEEGSEET 412

Query: 406 --ASINMAEGLLVSEIVDGD---LEERVLAHDLSMDGVKTSDEAL 525
             AS++ +E   + E  DGD   LEE V+A D   D  + SD+ L
Sbjct: 413 LEASMDESESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQL 457


>tr|B4LB61|B4LB61_DROVI GJ12813 OS=Drosophila virilis GN=GJ12813
           PE=4 SV=1
          Length = 940

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +1

Query: 250 TDPSASRDESFTAGWKPHLSASSDLYGYVAEQKHQEDPSLPSEGAETYFDSNASIN 417
           T+ +A+ D  FT G KP    +SD + YV +Q+  E+  +    + + + SNAS+N
Sbjct: 562 TNSAAAVDAVFTKGTKPR---ASDSWDYVYKQRASEESMIMRRRSNSSYSSNASVN 614