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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950132
Clone id TST38A01NGRL0007_N14
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_N14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CACACTTGTAGCTGCATCGGGACCGTTAGTAATTGCACTATTGGCTATCCGTAAAGGTAA
TTTATGAGATTGTTCCGCAATTAATTTTGTATTTTACAGGGATTCATTCAATTCATAAGA
AATGGGAAAGGGGGGGGGGGAGGGGGCTCCCTCTATACCAATGCAGATATGTTGATTTGT
GCAAGTCTCAACAAACATTGTGCAATTAATCTCTCTATTTACATCTATCTATTTATATAT
TACAATAAGTTTGTATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCA
GTGATTTTGATAGTTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTAT
CTTCGCAGAAAATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAAT
CTCGTCACTCATTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGT
ACCCCAAGAAATACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCT
ATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGG
AAAGAAAGTTGGAATAAATAAATCCGGGTTTGTCAAGATTATTGAAC
■■Homology search results ■■ -
sp_hit_id Q85FN5
Definition sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12 OS=Adiantum capillus-veneris
Align length 21
Score (bit) 41.6
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950132|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_N14, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf...    42   0.004
sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf...    37   0.068
sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf...    36   0.20 
sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf...    36   0.20 
sp|Q8WI31|YCF12_PSINU Photosystem II reaction center protein ycf...    35   0.26 
sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf...    35   0.26 
sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf...    34   0.58 
sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf...    34   0.75 
sp|P41600|YCF12_PINTH Photosystem II reaction center protein ycf...    33   0.98 
sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein ycf...    33   0.98 
sp|Q8M9Z7|YCF12_CHAGL Photosystem II reaction center protein ycf...    33   1.3  
sp|Q32RW9|YCF12_STAPU Photosystem II reaction center protein ycf...    33   1.7  
sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf...    32   3.7  
sp|Q9MS66|YCF12_EUGMU Photosystem II reaction center protein ycf...    31   4.9  
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   4.9  
sp|B2Y1W3|YCF12_WELMI Photosystem II reaction center protein ycf...    31   6.4  
sp|Q9MS72|YCF12_LEPBU Photosystem II reaction center protein ycf...    31   6.4  
sp|P31559|YCF12_EUGGR Photosystem II reaction center protein ycf...    31   6.4  
sp|B0YPM6|YCF12_ANEMR Photosystem II reaction center protein ycf...    31   6.4  
sp|Q20EY4|YCF12_OLTVI Photosystem II reaction center protein ycf...    30   8.3  

>sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein
          ycf12 OS=Adiantum capillus-veneris GN=ycf12 PE=2 SV=1
          Length = 33

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +2

Query: 2  TLVAASGPLVIALLAIRKGNL 64
          TLVAASGPLVIALLAIRKGNL
Sbjct: 13 TLVAASGPLVIALLAIRKGNL 33


>sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein
          ycf12 OS=Cycas taitungensis GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 37.4 bits (85), Expect = 0.068
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 2  TLVAASGPLVIALLAIRKGNL 64
          TL+  SGPLVIALLA+RKGNL
Sbjct: 13 TLIVISGPLVIALLAVRKGNL 33


>sp|P31560|YCF12_MARPO Photosystem II reaction center protein
          ycf12 OS=Marchantia polymorpha GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 0.20
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+ ASGPLVIALLA RKGNL
Sbjct: 14 LIVASGPLVIALLAARKGNL 33


>sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein
          ycf12 OS=Angiopteris evecta GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 0.20
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>sp|Q8WI31|YCF12_PSINU Photosystem II reaction center protein
          ycf12 OS=Psilotum nudum GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 35.4 bits (80), Expect = 0.26
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 2  TLVAASGPLVIALLAIRKGNL 64
          T +  SGPLVIALLAIRKGNL
Sbjct: 13 TSIIVSGPLVIALLAIRKGNL 33


>sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein
          ycf12 OS=Anthoceros formosae GN=ycf12 PE=2 SV=1
          Length = 33

 Score = 35.4 bits (80), Expect = 0.26
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+ ASGPLVIALLA RKGNL
Sbjct: 14 LIIASGPLVIALLAARKGNL 33


>sp|P61051|YCF12_PHYPA Photosystem II reaction center protein
          ycf12 OS=Physcomitrella patens GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA RKGNL
Sbjct: 14 LIVGSGPLVIALLAARKGNL 33


>sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein
          ycf12 OS=Zygnema circumcarinatum GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 33.9 bits (76), Expect = 0.75
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVI LLA+RKGNL
Sbjct: 14 LIVVSGPLVIGLLALRKGNL 33


>sp|P41600|YCF12_PINTH Photosystem II reaction center protein
          ycf12 OS=Pinus thunbergii GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 33.5 bits (75), Expect = 0.98
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 2  TLVAASGPLVIALLAIRKGNL 64
          TL+  SGPLVI L AIRKGNL
Sbjct: 13 TLMVVSGPLVIVLSAIRKGNL 33


>sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein
          ycf12 OS=Pinus koraiensis GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 33.5 bits (75), Expect = 0.98
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 2  TLVAASGPLVIALLAIRKGNL 64
          TL+  SGPLVI L AIRKGNL
Sbjct: 13 TLMVVSGPLVIVLSAIRKGNL 33
tr_hit_id B3U0E1
Definition tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi
Align length 20
Score (bit) 35.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950132|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_N14, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1         36   2.3  
tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1          36   2.3  
tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4 SV=1    36   2.3  
tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1        36   2.3  
tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1      36   2.3  
tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1       36   2.3  
tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4 SV=1     36   2.3  
tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4 SV=1     36   2.3  
tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1        36   2.3  
tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1        36   2.3  
tr|B3U077|B3U077_ANGEV Ycf12 OS=Angiopteris evecta PE=4 SV=1           36   2.3  
tr|B3U073|B3U073_9FILI Ycf12 OS=Marattia purpurascens PE=4 SV=1        36   2.3  
tr|B3U053|B3U053_9FILI Ycf12 OS=Marattia smithii PE=4 SV=1             36   2.3  
tr|B3U023|B3U023_9FILI Ycf12 OS=Marattia kaulfussii PE=4 SV=1          36   2.3  
tr|B3U020|B3U020_9FILI Ycf12 OS=Marattia laevis PE=4 SV=1              36   2.3  
tr|B3U016|B3U016_9FILI Ycf12 OS=Christensenia aesculifolia PE=4 ...    36   2.3  
tr|B3U014|B3U014_9FILI Ycf12 OS=Danaea wendlandii PE=4 SV=1            36   2.3  
tr|B3U008|B3U008_9FILI Ycf12 OS=Danaea nodosa PE=4 SV=1                36   2.3  
tr|B3U006|B3U006_9FILI Ycf12 OS=Danaea leprieurii PE=4 SV=1            36   2.3  
tr|B3U004|B3U004_9FILI Ycf12 OS=Danaea elliptica PE=4 SV=1             36   2.3  
tr|B2BWV0|B2BWV0_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    36   2.3  
tr|B2BWU4|B2BWU4_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    36   2.3  
tr|B2BWU2|B2BWU2_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    36   2.3  
tr|B2BWT6|B2BWT6_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    36   2.3  
tr|B2BWR0|B2BWR0_9FILI Hypothetical chloroplast RF12 OS=Abrodict...    35   3.0  
tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   3.9  
tr|Q9HZC5|Q9HZC5_PSEAE Aminopeptidase N OS=Pseudomonas aeruginos...    34   6.7  
tr|B7UUY8|B7UUY8_PSEAE Aminopeptidase N OS=Pseudomonas aeruginos...    34   6.7  
tr|A3LA70|A3LA70_PSEAE Aminopeptidase N OS=Pseudomonas aeruginos...    34   6.7  
tr|A3KWB5|A3KWB5_PSEAE Aminopeptidase N OS=Pseudomonas aeruginos...    34   6.7  

>tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4
          SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4
          SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4
          SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1
          Length = 33

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 5  LVAASGPLVIALLAIRKGNL 64
          L+  SGPLVIALLA+RKGNL
Sbjct: 14 LIVVSGPLVIALLAVRKGNL 33