DK950163 |
Clone id |
TST38A01NGRL0007_O22 |
Library |
TST38 |
Length |
654 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_O22. 5' end sequence. |
Accession |
DK950163 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL810Contig1 |
Sequence |
GTCAGAAACCACAACTACTGTAAAGTACAGGATGCCAACCCGTGGTCTGTTGGGACTTAG AAATGCCATGCTTACTGCCTCTCGTGGAACTGCAATCCTCAATACAGTGTTTCATGGCTA TGATGTGTGGGCAGGAGAAATCAGCACAAGGGATCAAGGCTCTTTGGTGGCTTTTGAGAC GGGCACTACAACTTCCTATGCTCTTTTCAGTTGCCAAGAGCGTGGTCAAATGTTTGTTGG CCCTGGGGTGGATGTATATAAAGGACAAATTGTCGGTATTCATCAAAGACCTGGGGATCT AGCTTTAAATGCTTGCAAGAGGAAGGCAGCAACAAATGTTCGTTCGAACAAAGAGGCAAC AGTTGTACTGAATACACCACTGGATTTTAGTCTTGATGATTGTGTGGAGTATATACAAGA GGATGAGCTGGTTGAAATTACACCACTCAGCGTGCGCATGTGTAAAAATCCCAAGATGAG TAAGAAAGGCAAGTAAGAGGTGGTGACTGGTTCCTGTGTATAATTTTTTTCCTGCCAAGC AACCTTGGCAGCCTATATAGTGCAAATTATACATTGAAGGCTGCAACACAGTCCGCAGCA CATTTCAATGACAAATGAGAAGATGGACACTTTCATGAAACGTGCCTTCTACTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P44910 |
Definition |
sp|P44910|TYPA_HAEIN GTP-binding protein typA/bipA homolog OS=Haemophilus influenzae |
Align length |
151 |
Score (bit) |
135.0 |
E-value |
1.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950163|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_O22, 5' (654 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P44910|TYPA_HAEIN GTP-binding protein typA/bipA homolog OS=Ha... 135 1e-31 sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog OS=Sy... 132 2e-30 sp|P0A3B4|TYPA_SHIFL GTP-binding protein typA/bipA OS=Shigella f... 127 4e-29 sp|P32132|TYPA_ECOLI GTP-binding protein typA/BipA OS=Escherichi... 127 4e-29 sp|P0A3B1|TYPA_ECOL6 GTP-binding protein typA/bipA OS=Escherichi... 127 4e-29 sp|P0A3B3|TYPA_ECO57 GTP-binding protein typA/bipA OS=Escherichi... 127 4e-29 sp|P0A3B2|TYPA_ECO27 GTP-binding protein typA/bipA OS=Escherichi... 127 4e-29 sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog OS=He... 125 1e-28 sp|Q9ZLZ3|TYPA_HELPJ GTP-binding protein TypA/BipA homolog OS=He... 125 1e-28 sp|O07631|TYPA_BACSU GTP-binding protein typA/bipA homolog OS=Ba... 122 2e-27 sp|P57508|TYPA_BUCAI GTP-binding protein TypA/BipA homolog OS=Bu... 117 5e-26 sp|Q8K9C8|TYPA_BUCAP GTP-binding protein TypA/BipA homolog OS=Bu... 115 2e-25 sp|Q89AC9|TYPA_BUCBP GTP-binding protein TypA/BipA homolog OS=Bu... 107 5e-23 sp|P41895|T2FA_YEAST Transcription initiation factor IIF subunit... 31 5.0 sp|A6QLH6|NTKL_BOVIN N-terminal kinase-like protein OS=Bos tauru... 31 5.0 sp|Q71H61|CA032_HUMAN Transmembrane and immunoglobulin domain-co... 31 6.5 sp|Q9GMY7|PEPA_RHIFE Pepsin A OS=Rhinolophus ferrumequinum GN=PG... 30 8.5
>sp|P44910|TYPA_HAEIN GTP-binding protein typA/bipA homolog OS=Haemophilus influenzae GN=typA PE=1 SV=1 Length = 616
Score = 135 bits (341), Expect = 1e-31 Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 2/151 (1%) Frame = +2
Query: 20 VKYRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTS 196 ++Y +P+RGL+G R +T + GT +L + F YD + GEI R G L++ TG Sbjct: 445 LEYIIPSRGLIGFRGDFMTMTSGTGLLYSSFSHYDEIKGGEIGQRKNGVLISNATGKALG 504
Query: 197 YALFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEATVVLN 373 YALF QERG++ + ++VY+GQI+GIH R DL +N + K TN+R S K+ +VL Sbjct: 505 YALFGLQERGKLMIDANIEVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLT 564
Query: 374 TPLDFSLDDCVEYIQEDELVEITPLSVRMCK 466 TP+ FSL+ +E+I +DELVE+TP S+R+ K Sbjct: 565 TPVKFSLEQAIEFIDDDELVEVTPESIRIRK 595
>sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803) GN=typA PE=3 SV=1 Length = 597
Score = 132 bits (332), Expect = 2e-30 Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Frame = +2
Query: 14 TTVKYRMPTRGLLGLRNAMLTASRGTAILNTVFHGYDVWAGEISTRDQGSLVAFETGTTT 193 T +++ +P RGLLG R + +RG I+N F Y +G++ TR G +VAFE G T Sbjct: 437 TQLEFVIPARGLLGFRGDFIRITRGEGIMNHSFLEYRPMSGDLETRYNGVMVAFEEGVAT 496
Query: 194 SYALFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVRS-NKEATVVL 370 YA+ + ++RG F+ PG VYKG I+G H RP D+ LN CK K TN RS + V L Sbjct: 497 FYAMKNAEDRGVFFITPGTKVYKGMIIGEHNRPQDIELNVCKTKQLTNHRSATGDELVQL 556
Query: 371 NTPLDFSLDDCVEYIQEDELVEITPLSVRMCK 466 P D +L+ +EYI DELVEITP S+R+ K Sbjct: 557 QAPEDMNLERALEYIGPDELVEITPESIRLRK 588
>sp|P0A3B4|TYPA_SHIFL GTP-binding protein typA/bipA OS=Shigella flexneri GN=typA PE=3 SV=1 Length = 607
Score = 127 bits (320), Expect = 4e-29 Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Frame = +2
Query: 26 YRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTSYA 202 Y +P+RGL+G R+ +T + GT +L + F YD V GE+ R G L++ G ++A Sbjct: 441 YVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFA 500
Query: 203 LFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEATVVLNTP 379 LF Q+RG++F+G G +VY+GQI+GIH R DL +N K TN+R S + VVL P Sbjct: 501 LFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPP 560
Query: 380 LDFSLDDCVEYIQEDELVEITPLSVRMCK 466 + +L+ +E+I +DELVE+TP S+R+ K Sbjct: 561 IRMTLEQALEFIDDDELVEVTPTSIRIRK 589
>sp|P32132|TYPA_ECOLI GTP-binding protein typA/BipA OS=Escherichia coli (strain K12) GN=typA PE=1 SV=2 Length = 607
Score = 127 bits (320), Expect = 4e-29 Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Frame = +2
Query: 26 YRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTSYA 202 Y +P+RGL+G R+ +T + GT +L + F YD V GE+ R G L++ G ++A Sbjct: 441 YVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFA 500
Query: 203 LFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEATVVLNTP 379 LF Q+RG++F+G G +VY+GQI+GIH R DL +N K TN+R S + VVL P Sbjct: 501 LFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPP 560
Query: 380 LDFSLDDCVEYIQEDELVEITPLSVRMCK 466 + +L+ +E+I +DELVE+TP S+R+ K Sbjct: 561 IRMTLEQALEFIDDDELVEVTPTSIRIRK 589
>sp|P0A3B1|TYPA_ECOL6 GTP-binding protein typA/bipA OS=Escherichia coli O6 GN=typA PE=3 SV=1 Length = 607
Score = 127 bits (320), Expect = 4e-29 Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Frame = +2
Query: 26 YRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTSYA 202 Y +P+RGL+G R+ +T + GT +L + F YD V GE+ R G L++ G ++A Sbjct: 441 YVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFA 500
Query: 203 LFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEATVVLNTP 379 LF Q+RG++F+G G +VY+GQI+GIH R DL +N K TN+R S + VVL P Sbjct: 501 LFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPP 560
Query: 380 LDFSLDDCVEYIQEDELVEITPLSVRMCK 466 + +L+ +E+I +DELVE+TP S+R+ K Sbjct: 561 IRMTLEQALEFIDDDELVEVTPTSIRIRK 589
>sp|P0A3B3|TYPA_ECO57 GTP-binding protein typA/bipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1 Length = 607
Score = 127 bits (320), Expect = 4e-29 Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Frame = +2
Query: 26 YRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTSYA 202 Y +P+RGL+G R+ +T + GT +L + F YD V GE+ R G L++ G ++A Sbjct: 441 YVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFA 500
Query: 203 LFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEATVVLNTP 379 LF Q+RG++F+G G +VY+GQI+GIH R DL +N K TN+R S + VVL P Sbjct: 501 LFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPP 560
Query: 380 LDFSLDDCVEYIQEDELVEITPLSVRMCK 466 + +L+ +E+I +DELVE+TP S+R+ K Sbjct: 561 IRMTLEQALEFIDDDELVEVTPTSIRIRK 589
>sp|P0A3B2|TYPA_ECO27 GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 GN=typA PE=3 SV=1 Length = 607
Score = 127 bits (320), Expect = 4e-29 Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Frame = +2
Query: 26 YRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTSYA 202 Y +P+RGL+G R+ +T + GT +L + F YD V GE+ R G L++ G ++A Sbjct: 441 YVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFA 500
Query: 203 LFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEATVVLNTP 379 LF Q+RG++F+G G +VY+GQI+GIH R DL +N K TN+R S + VVL P Sbjct: 501 LFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPP 560
Query: 380 LDFSLDDCVEYIQEDELVEITPLSVRMCK 466 + +L+ +E+I +DELVE+TP S+R+ K Sbjct: 561 IRMTLEQALEFIDDDELVEVTPTSIRIRK 589
>sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1 Length = 599
Score = 125 bits (315), Expect = 1e-28 Identities = 61/168 (36%), Positives = 104/168 (61%), Gaps = 4/168 (2%) Frame = +2
Query: 2 SETTTTVKYRMPTRGLLGLRNAMLTASRGTAILNTVFHGYDVWAGEISTRDQGSLVAFET 181 S+ T +++ +P RGL+G R+ LT ++G ++N F + ++G + +R G+L++ E Sbjct: 431 SDGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNHSFLEFRPFSGSVESRKNGALISMEN 490
Query: 182 GTTTSYALFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEA 358 G T+++LF+ QERG +F+ P VY G ++G H R DL +N K K TN+R S + Sbjct: 491 GEATAFSLFNIQERGTLFINPQTKVYVGMVIGEHSRDNDLDVNPIKSKHLTNMRASGSDD 550
Query: 359 TVVLNTPLDFSLDDCVEYIQEDELVEITPLSVRMCK---NPKMSKKGK 493 + L P L+ +E+I+EDE++E+TPL++R+ K +P M K+ K Sbjct: 551 AIKLTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKILDPNMRKRAK 598
>sp|Q9ZLZ3|TYPA_HELPJ GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1 Length = 599
Score = 125 bits (315), Expect = 1e-28 Identities = 61/168 (36%), Positives = 104/168 (61%), Gaps = 4/168 (2%) Frame = +2
Query: 2 SETTTTVKYRMPTRGLLGLRNAMLTASRGTAILNTVFHGYDVWAGEISTRDQGSLVAFET 181 S+ T +++ +P RGL+G R+ LT ++G ++N F + ++G + +R G+L++ E Sbjct: 431 SDGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNHSFLEFRPFSGSVESRKNGALISMEN 490
Query: 182 GTTTSYALFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVR-SNKEA 358 G T+++LF+ QERG +F+ P VY G ++G H R DL +N K K TN+R S + Sbjct: 491 GEATAFSLFNIQERGALFINPQTKVYVGMVIGEHSRDNDLDVNPIKSKHLTNMRASGSDD 550
Query: 359 TVVLNTPLDFSLDDCVEYIQEDELVEITPLSVRMCK---NPKMSKKGK 493 + L P L+ +E+I+EDE++E+TPL++R+ K +P M K+ K Sbjct: 551 AIKLTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKILDPNMRKRAK 598
>sp|O07631|TYPA_BACSU GTP-binding protein typA/bipA homolog OS=Bacillus subtilis GN=typA PE=3 SV=1 Length = 612
Score = 122 bits (306), Expect = 2e-27 Identities = 64/149 (42%), Positives = 90/149 (60%), Gaps = 2/149 (1%) Frame = +2
Query: 26 YRMPTRGLLGLRNAMLTASRGTAILNTVFHGYD-VWAGEISTRDQGSLVAFETGTTTSYA 202 + +P+RGL+G L+ +RG ILN F Y + AG++ R QG LV+ E G TSY Sbjct: 443 FTVPSRGLIGYSTEFLSLTRGFGILNHTFDSYQPMQAGQVGGRRQGVLVSMENGKATSYG 502
Query: 203 LFSCQERGQMFVGPGVDVYKGQIVGIHQRPGDLALNACKRKAATNVRS-NKEATVVLNTP 379 + ++RG +FV PG +VY+G IVG H R DL +N K K TNVRS K+ T + Sbjct: 503 IQGIEDRGVIFVEPGTEVYEGMIVGEHNRDNDLVVNVSKMKQQTNVRSATKDQTTTIKKA 562
Query: 380 LDFSLDDCVEYIQEDELVEITPLSVRMCK 466 SL++ +EY+ EDE E+TP S+R+ K Sbjct: 563 RIMSLEESLEYLNEDEYCEVTPESIRLRK 591
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9REI5 |
Definition |
tr|A9REI5|A9REI5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
162 |
Score (bit) |
293.0 |
E-value |
6.0e-78 |
Report |
|