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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950178
Clone id TST38A01NGRL0007_P13
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_P13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGAAGGGATTGGTGTTTTGCCTACAGCAGGATTGGATGGGTTTGTGCTTGCAAGGGTGA
AACCCTGCCTAAAAGCAGTCAATAGGCATAAACACTACTTCAAGGAGACTTCCCATCTAA
GTGATCGCAGTTACGGAAAGGAACCAATCAAGTTTACAAAGAGGAAGCTGAATGTGAATT
TTGCTGATTTAGTCTTTGACTGCAAGGTGCCTGAGATTGATGAGCACAGAAACGGTGCAA
GTAGTGTGGAAATTCAGCAAGGGTGCTGGGAAAGGTCCAGGGCACAAAGAAACAGTATGC
GGTCGTGTAAGTGGGAGCAAAAATTGCAACTGAATTCAGGGCTTGGTCTGCTCCAGCCAG
TCTCAAGAATTGAAAGCTCCAAGCATGCTGTGGAGAGTGTGCTAGACTATTCAGCTACGA
ATGTTCTATGTCCAAGTGTTGAACTTCAATTATCGTCACCTTTCTCTGGGGCTGTGCTAG
CTTTGCATGTGAATAAGACTGCAGACAACAGTTGTTCAAGACATTATATTGGAGCTGGAT
CTGCCAGACGCATATCATTTACACGGAGACTGACGCTCACCGTGTCTGCAATTGATGTCA
ATGACTCANGAACAGAAGTTTCAGGCCAATACATATCCNTGAGACGGAATTGTGAAGCTA
ATTCCTGTGT
■■Homology search results ■■ -
sp_hit_id O82784
Definition sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina
Align length 62
Score (bit) 32.0
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950178|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_P13, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus seroti...    32   3.0  
sp|Q6UY01|LRC31_HUMAN Leucine-rich repeat-containing protein 31 ...    31   5.2  
sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (is...    30   8.9  

>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina
           GN=MDL4 PE=2 SV=1
          Length = 574

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 308 TRPHTVSLCPGPFPAPLLNFHTTCTVSVLINLRHLAVKD*ISKIHIQLPLCKLDWFLSVT 129
           T  H VS  PGP  A  L   ++  VSV  N++     D +   H    + K+  FLS  
Sbjct: 383 TFAHIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTD 442

Query: 128 AI 123
           A+
Sbjct: 443 AL 444


>sp|Q6UY01|LRC31_HUMAN Leucine-rich repeat-containing protein 31
           OS=Homo sapiens GN=LRRC31 PE=2 SV=1
          Length = 552

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -2

Query: 522 VLNNCCLQSYSHAKLAQPQRKVTIIEVQHLDIEH---S*LNSLAHSPQHAWSFQFLRLAG 352
           V+NNC L+S +   LA+    ++ +EV +L         L  L  + + + S Q LRL+ 
Sbjct: 372 VINNCALESETFTALAEASVHLSALEVFNLSWNKCVGGNLKLLLETLKLSMSLQVLRLSS 431

Query: 351 ADQALNSVAIFAPTYTTAY 295
                  VA+ A    T +
Sbjct: 432 CSLVTEDVALLASVIQTGH 450


>sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (isolate
            NW) PE=3 SV=1
          Length = 2284

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 26/102 (25%), Positives = 44/102 (43%)
 Frame = +3

Query: 276  SRAQRNSMRSCKWEQKLQLNSGLGLLQPVSRIESSKHAVESVLDYSATNVLCPSVELQLS 455
            SR   + +R C ++ K +L     LL  +  I         VL  +A +++   + L   
Sbjct: 1145 SRGALDVLRDCMYKSKAKLVENYSLLLTLVAI--------LVLIATAYSLISTLIGLAGC 1196

Query: 456  SPFSGAVLALHVNKTADNSCSRHYIGAGSARRISFTRRLTLT 581
            S F+G ++AL+    A   CS   +  G   R  F  R++ T
Sbjct: 1197 SSFAGGMVALNHVSNASIPCSEPRLEEGYIPRNKFVSRISRT 1238
tr_hit_id Q1BIF3
Definition tr|Q1BIF3|Q1BIF3_BURCA Transcriptional regulator, AraC family OS=Burkholderia cenocepacia (strain AU 1054)
Align length 129
Score (bit) 36.2
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950178|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_P13, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1BIF3|Q1BIF3_BURCA Transcriptional regulator, AraC family OS...    36   1.9  
tr|B1KBU8|B1KBU8_BURCC Transcriptional regulator, AraC family OS...    36   1.9  
tr|A0KCB6|A0KCB6_BURCH Transcriptional regulator, AraC family OS...    36   1.9  
tr|B4EPQ2|B4EPQ2_BURCJ AraC family regulatory protein OS=Burkhol...    35   4.2  
tr|A0C9V1|A0C9V1_PARTE Chromosome undetermined scaffold_16, whol...    35   4.2  
tr|A8NFF8|A8NFF8_COPC7 Putative uncharacterized protein OS=Copri...    35   4.2  
tr|A3K4U4|A3K4U4_9RHOB ABC transporter binding protein OS=Sagitt...    35   5.5  
tr|B0X0E8|B0X0E8_CULQU Dystrophin major muscle OS=Culex quinquef...    35   5.5  
tr|A9TXC6|A9TXC6_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   9.4  

>tr|Q1BIF3|Q1BIF3_BURCA Transcriptional regulator, AraC family
           OS=Burkholderia cenocepacia (strain AU 1054)
           GN=Bcen_5733 PE=4 SV=1
          Length = 389

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
 Frame = +3

Query: 276 SRAQRNSMRSCKWEQKLQLNSGLGLLQPVSR---IESSKHAVESVLDYSATNVLCPSVEL 446
           SR+QRN  R+     +  L S LGL +P  R   I ++ HA+   LD      +  +  L
Sbjct: 28  SRSQRNQSRA-----ERSLRSALGLARPAGRQEDIPATVHAIAVALDECRVRHIAGAALL 82

Query: 447 QLSSPFSGAVLA--LHVNKTADNSCSRHYIGAGSARRISFTRRLTLTVSAIDVNDSXTEV 620
           + +   +  V +  LHVN+  +  C R+ +       I  +    L VS + +      +
Sbjct: 83  EGTGLGADEVASPNLHVNRGQEQRCFRNLLRCSGVPSIGLSIGARLHVSTLGLAGYAMLI 142

Query: 621 SGQYISXRR 647
           SG  +   R
Sbjct: 143 SGSVMQAFR 151


>tr|B1KBU8|B1KBU8_BURCC Transcriptional regulator, AraC family
           OS=Burkholderia cenocepacia (strain MC0-3)
           GN=Bcenmc03_6580 PE=4 SV=1
          Length = 364

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
 Frame = +3

Query: 276 SRAQRNSMRSCKWEQKLQLNSGLGLLQPVSR---IESSKHAVESVLDYSATNVLCPSVEL 446
           SR+QRN  R+     +  L S LGL +P  R   I ++ HA+   LD      +  +  L
Sbjct: 3   SRSQRNQSRA-----ERSLRSALGLARPAGRQEDIPATVHAIAVALDECRVRHIAGAALL 57

Query: 447 QLSSPFSGAVLA--LHVNKTADNSCSRHYIGAGSARRISFTRRLTLTVSAIDVNDSXTEV 620
           + +   +  V +  LHVN+  +  C R+ +       I  +    L VS + +      +
Sbjct: 58  EGTGLGADEVASPNLHVNRGQEQRCFRNLLRCSGVPSIGLSIGARLHVSTLGLAGYAMLI 117

Query: 621 SGQYISXRR 647
           SG  +   R
Sbjct: 118 SGSVMQAFR 126


>tr|A0KCB6|A0KCB6_BURCH Transcriptional regulator, AraC family
           OS=Burkholderia cenocepacia (strain HI2424)
           GN=Bcen2424_6097 PE=4 SV=1
          Length = 389

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
 Frame = +3

Query: 276 SRAQRNSMRSCKWEQKLQLNSGLGLLQPVSR---IESSKHAVESVLDYSATNVLCPSVEL 446
           SR+QRN  R+     +  L S LGL +P  R   I ++ HA+   LD      +  +  L
Sbjct: 28  SRSQRNQSRA-----ERSLRSALGLARPAGRQEDIPATVHAIAVALDECRVRHIAGAALL 82

Query: 447 QLSSPFSGAVLA--LHVNKTADNSCSRHYIGAGSARRISFTRRLTLTVSAIDVNDSXTEV 620
           + +   +  V +  LHVN+  +  C R+ +       I  +    L VS + +      +
Sbjct: 83  EGTGLGADEVASPNLHVNRGQEQRCFRNLLRCSGVPSIGLSIGARLHVSTLGLAGYAMLI 142

Query: 621 SGQYISXRR 647
           SG  +   R
Sbjct: 143 SGSVMQAFR 151


>tr|B4EPQ2|B4EPQ2_BURCJ AraC family regulatory protein
           OS=Burkholderia cepacia (strain J2315 / LMG 16656)
           GN=BceJ2315_64100 PE=4 SV=1
          Length = 364

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
 Frame = +3

Query: 276 SRAQRNSMRSCKWEQKLQLNSGLGLLQPVSR---IESSKHAVESVLDYSATNVLCPSVEL 446
           SR+QRN  R+     +  L S LGL +P  R   I ++ HA+   LD      +  +  L
Sbjct: 3   SRSQRNQSRA-----ERSLRSALGLARPAGRQEDIPATVHAIAVALDECRVRRIDGAALL 57

Query: 447 QLSSPFSGAVLA--LHVNKTADNSCSRHYIGAGSARRISFTRRLTLTVSAIDVNDSXTEV 620
           + +   +  V +  LHVN+  +  C R+ +       I  +    L VS + +      +
Sbjct: 58  EGTGLGADEVASPNLHVNRGQEQRCFRNLLRCSGVPSIGLSIGARLHVSTLGLAGYAMLI 117

Query: 621 SGQYISXRR 647
           SG  +   R
Sbjct: 118 SGSVMQAFR 126


>tr|A0C9V1|A0C9V1_PARTE Chromosome undetermined scaffold_16, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00006875001 PE=4 SV=1
          Length = 250

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = +3

Query: 126 RSYGKEPIKFTKRKLNVNFADLVFDCKVPEIDEHRNGASSVEIQQGCWERSRAQRNSMRS 305
           ++YG + +K T R +N+N  D+V +CK  +         SVE+Q+G     + Q  SM+ 
Sbjct: 161 QNYGNDSVKLTIRSVNLNGKDIVVECKQNQSVVDLKEIISVELQKG----HQIQLESMKL 216

Query: 306 CKWEQKLQLNSGLG 347
               +++Q N  +G
Sbjct: 217 FYRGKEMQDNYQVG 230


>tr|A8NFF8|A8NFF8_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04251 PE=4 SV=1
          Length = 789

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 28/137 (20%), Positives = 57/137 (41%)
 Frame = +3

Query: 69  LKAVNRHKHYFKETSHLSDRSYGKEPIKFTKRKLNVNFADLVFDCKVPEIDEHRNGASSV 248
           LK + +++  + ET    ++      +  T RK      D+  + K   +D      ++ 
Sbjct: 86  LKRLMKYRIDYAETEEEKEKERNFMGLGLTSRKNLCINPDVAREKKGTVVDARCRDLTNT 145

Query: 249 EIQQGCWERSRAQRNSMRSCKWEQKLQLNSGLGLLQPVSRIESSKHAVESVLDYSATNVL 428
            +     E++R    S+  C W + L      G ++P + I      +E VL+Y+   V+
Sbjct: 146 AV----CEKNRENPGSVPVCDWHENL------GKMEPGTLIPQGIWTLEGVLEYARQKVI 195

Query: 429 CPSVELQLSSPFSGAVL 479
           CP   ++    F+  V+
Sbjct: 196 CPYFAVRRMMGFADIVI 212


>tr|A3K4U4|A3K4U4_9RHOB ABC transporter binding protein OS=Sagittula
           stellata E-37 GN=SSE37_02030 PE=4 SV=1
          Length = 305

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
 Frame = +3

Query: 192 VFDCKVPEIDEHRNGASSVEIQQGCWERSRAQRNSMRSCKWEQKLQLNSGLGLLQPVSRI 371
           +FD  +   D    GA+ V+I++G W  +  +        W+  L+ +     ++ +S I
Sbjct: 81  IFDAALATGDVVNMGATGVKIREGWWYPTYVEEVCPGLPDWKALLETD----CVEALSTI 136

Query: 372 ESSKHA--VESVLDYSATNVL-CPSVELQLSSPFSGAVLALHVNKTADNSCSRHYIGAGS 542
           E+S  A  VE+  D++  NV    S+EL  S   +G   ALH             IG G 
Sbjct: 137 ETSPLARFVEAPADWTTNNVARVKSLELPYSLESTGTPAALHAAIVGPMQRKEPVIGWGF 196

Query: 543 A 545
           A
Sbjct: 197 A 197


>tr|B0X0E8|B0X0E8_CULQU Dystrophin major muscle OS=Culex
            quinquefasciatus GN=CpipJ_CPIJ013032 PE=4 SV=1
          Length = 3479

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
 Frame = +3

Query: 105  ETSHLSDRSYGKEPIKFTKRKLNVNFADLVFDCKVPEIDEHRNGASSVEIQQGCWERSRA 284
            E S L  R    EP+  TK   N+        C V EI E +N  + + +Q         
Sbjct: 1728 EKSVLFSRVSNNEPLNETKLTSNMQSEIERNKCSVVEIKE-KNIPTKMSVQ--------- 1777

Query: 285  QRNSMRSCKWEQKL--QLNSGLGLLQPVSRIESSKHAVESVLDYSATNVLCPSVELQLSS 458
               ++  C W++ +  QL   + +L+     E       +++D S ++  CPS +L+   
Sbjct: 1778 ---NVEICPWDEPMHGQLVDNINVLEMCQTFEPEFVETVNIIDASESDTSCPSPKLESRD 1834

Query: 459  PFSGAVLALHVNKTAD 506
                 +L     KTA+
Sbjct: 1835 KMKDVLLMEATIKTAN 1850


>tr|A9TXC6|A9TXC6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_172515 PE=4 SV=1
          Length = 960

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 87  HKHYFKETSHLSDRSYGKEPIKFTKRKLNVNFADLVFDCKVPEIDEHRNGASSVEI 254
           H ++ + +    DR Y  E +     +  V+F     DC + +   HRNG SS E+
Sbjct: 817 HTNFERASGSYDDRRYSDESVHGAGGQRRVSFPAAKIDCDLRQQHSHRNGYSSAEL 872