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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950210
Clone id TST38A01NGRL0008_A21
Library
Length 700
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_A21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAGCTGGTGCTACTGAAGCAGCTAGCCTATGGCGTCCTCATTGGGCTCGTCTCTCTCCT
TATCTTTCCGCGCGCATCAGCAGCAGAGGCGTCTCGTACTATGCCAGGCTTGTCCTGAAA
ACGCTTCGTGCCCCGACAAAGCTTTTCCTGCTTTGAAGCTCGATTCAAGTAGGCGACATG
TGCTTCTGATTGCAGTTTCTGCGTGCGGCGTCCTACTCTCCTTCAACCCAGCCGCTCTCG
CTCTCCTCGAAGCAGATGACGATGAGGAGCTCCTCGAGAAGGTCAAGGAAGATCGCAAAA
AGAAGATCAAGCGACGTGGGGAAATCAACTCCTTCAAAGAGGAAACAGCATCCCTGCAAG
CTGCTATTTATCAGCTAAGCAAGGCAGGCCAGGCCTTGGATGGAAATGACTTCTCAGCTG
CAAGAAAAATACTTGGTGAAAGTCCTAGTGAGGGTTGGATCGCTGATGTGGAGAAGGCTT
TGTCCAAGGTGAGTTCAAGTGCTGAGGAACAAGGCGAAGCCAAGGTGTTTTCATCATCTT
TGGCAAACCTGCAAATGGCAGTGAGCAAGCAGGATATCGATCTTTCCAAAAGTGCCTTTG
TAAAGTCTGCTGGTGCTTTAGAAAAATGGTCCTTCTTGACTGGTTTTGCTGAGCAGCTTA
AAGGCCTCTAGCTTTACAAAATAGCTCAAGAGTCATTATC
■■Homology search results ■■ -
sp_hit_id O22773
Definition sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana
Align length 121
Score (bit) 114.0
E-value 4.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950210|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_A21, 5'
         (700 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chlorop...   114   4e-25
sp|A3N075|NRDR_ACTP2 Transcriptional repressor nrdR OS=Actinobac...    36   0.23 
sp|A1T5H7|SECA2_MYCVP Protein translocase subunit secA 2 OS=Myco...    32   4.3  
sp|A5GBD1|Y902_GEOUR UPF0182 protein Gura_0902 OS=Geobacter uran...    30   9.6  

>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1
           SV=3
          Length = 216

 Score =  114 bits (286), Expect = 4e-25
 Identities = 60/121 (49%), Positives = 81/121 (66%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           I+R+  +NS  +E   LQ  +Y+LSK GQA++ ND  AA  +LG+     W+  V  A +
Sbjct: 96  IERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFT 155

Query: 486 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKG 665
           K+S+S EE  E + F+SSLA+L  +V+K DI+ SK AFV SAGA EKW+ LTG  EQLKG
Sbjct: 156 KLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKG 215

Query: 666 L 668
           L
Sbjct: 216 L 216


>sp|A3N075|NRDR_ACTP2 Transcriptional repressor nrdR
           OS=Actinobacillus pleuropneumoniae serotype 5b (strain
           L20) GN=nrdR PE=3 SV=1
          Length = 149

 Score = 35.8 bits (81), Expect = 0.23
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAI----YQLSKAGQAL--DGNDFSAA-RKILGESPSEGWIA 464
           I+RR E  S KE   + ++A     Y +   G  +  D N    +  + L + P      
Sbjct: 25  IRRRRECTSCKERFTTFESAELVVPYVIKNNGNRVPFDANKLRVSLSRALEKRPVSA--D 82

Query: 465 DVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTG 644
           D+EKA+SK+    +  GE +V S  + +L M   KQ   L K A+++ A     +  +  
Sbjct: 83  DLEKAISKIIIQLQSTGEREVPSKLVGSLAMDALKQ---LDKVAYIRFASVYLSFDDIEE 139

Query: 645 FAEQLKGL 668
           F ++++ L
Sbjct: 140 FTKEIEKL 147


>sp|A1T5H7|SECA2_MYCVP Protein translocase subunit secA 2
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=secA2 PE=3 SV=1
          Length = 850

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 465 DVEKALSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKS 593
           D+EK +S++     E  EAKV S ++ N Q  V + + D+ +S
Sbjct: 596 DLEKLMSRLKMPEREPIEAKVVSRAIRNAQSQVEQANFDMRRS 638


>sp|A5GBD1|Y902_GEOUR UPF0182 protein Gura_0902 OS=Geobacter
           uraniireducens (strain Rf4) GN=Gura_0902 PE=3 SV=1
          Length = 892

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 4   AGATEAASLWRPHW--ARLSPYLSARISSRGVSYYARLVLKTLRAPTKLFL 150
           AGA  AA LW+  W  A L P L   +   G+  Y  L+ K   AP +L L
Sbjct: 256 AGAILAAGLWQGAWRLALLPPILVIAVYGIGIKAYPALLEKFKVAPNQLAL 306
tr_hit_id A9NQL0
Definition tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 119
Score (bit) 123.0
E-value 1.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950210|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_A21, 5'
         (700 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea...   123   1e-26
tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genom...   112   3e-23
tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...   107   6e-22
tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea m...   107   6e-22
tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subs...   107   7e-22
tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza...   107   7e-22
tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza...   105   4e-21
tr|A9SFH1|A9SFH1_PHYPA Predicted protein OS=Physcomitrella paten...    80   1e-13
tr|B6TLE6|B6TLE6_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...    62   4e-08
tr|A8HY43|A8HY43_CHLRE Thylakoid lumenal protein OS=Chlamydomona...    59   3e-07
tr|A4SAK5|A4SAK5_OSTLU Predicted protein OS=Ostreococcus lucimar...    50   1e-04
tr|B7FKG3|B7FKG3_MEDTR Putative uncharacterized protein OS=Medic...    42   0.029
tr|Q00RS7|Q00RS7_OSTTA Chromosome 20 contig 1, DNA sequence OS=O...    39   0.32 
tr|B0BNZ1|B0BNZ1_ACTPJ ATP-cone domain protein OS=Actinobacillus...    37   1.6  
tr|B2JUI3|B2JUI3_BURP8 Prophage tail length tape measure OS=Burk...    36   2.1  
tr|Q0I566|Q0I566_HAES1 Putative uncharacterized protein OS=Haemo...    36   2.7  
tr|B3GXE6|B3GXE6_ACTP7 Transcriptional repressor NrdR OS=Actinob...    36   2.7  
tr|A6DIN5|A6DIN5_9BACT Transcription termination factor Rho OS=L...    36   2.7  
tr|A7TMW9|A7TMW9_VANPO Putative uncharacterized protein OS=Vande...    36   2.7  
tr|A5DD85|A5DD85_PICGU Putative uncharacterized protein OS=Pichi...    35   4.6  
tr|Q1YRQ9|Q1YRQ9_9GAMM Leucyl aminopeptidase OS=gamma proteobact...    35   6.0  
tr|Q0U107|Q0U107_PHANO Putative uncharacterized protein OS=Phaeo...    34   7.9  

>tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 229

 Score =  123 bits (309), Expect = 1e-26
 Identities = 63/119 (52%), Positives = 89/119 (74%)
 Frame = +3

Query: 312 RRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSKV 491
           ++ +IN+ K E A +Q A+Y+LS+ GQA++ NDF+ A  +LG+S    WI DV++A  KV
Sbjct: 111 QQDKINTLKNEAAYVQEAVYKLSEVGQAIEKNDFTRAIGVLGKSLDTKWIVDVKEAFLKV 170

Query: 492 SSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKGL 668
           SS  E++ +A+ F++SL +L  AVSK+++DLSKSAFV SA ALE WS LTG +EQLKGL
Sbjct: 171 SSDPEQKSKAETFTASLDSLISAVSKKNLDLSKSAFVSSADALEDWSALTGLSEQLKGL 229


>tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016931001
           PE=4 SV=1
          Length = 234

 Score =  112 bits (279), Expect = 3e-23
 Identities = 58/121 (47%), Positives = 79/121 (65%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           I+++G I+S  +ET  LQ  +Y+LSK GQA+D ND SAA   LG +    W+     A +
Sbjct: 114 IEKQGVISSSNKETGYLQELVYKLSKVGQAIDNNDLSAASSFLGSNTDADWVQKANIAFT 173

Query: 486 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKG 665
           K+SSS EE+ E   F+SSLA+L  +V + D++ SK AFV SA A EKW+ LTG   +LKG
Sbjct: 174 KLSSSPEEKSEVDAFNSSLASLISSVVRNDMESSKIAFVSSATAFEKWTTLTGLVGRLKG 233

Query: 666 L 668
           L
Sbjct: 234 L 234


>tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea
           mays PE=2 SV=1
          Length = 246

 Score =  107 bits (268), Expect = 6e-22
 Identities = 59/120 (49%), Positives = 77/120 (64%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           ++++G I+S   ET  LQ  IY+LSK GQA+D +D  AA  +LG S    W+ ++  A S
Sbjct: 126 LQKQGIISSSGAETGYLQDLIYRLSKVGQAIDNDDLPAASSVLGPSSDAQWVQNINAAFS 185

Query: 486 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKG 665
           K+SSS E++     F+SSLA L  +VSK D + SKSAFV SA ALEKW  L G   QLKG
Sbjct: 186 KLSSSPEQRNVVDSFNSSLATLFTSVSKLDPESSKSAFVSSATALEKWIALAGLGGQLKG 245


>tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 245

 Score =  107 bits (268), Expect = 6e-22
 Identities = 59/120 (49%), Positives = 77/120 (64%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           ++++G I+S   ET  LQ  IY+LSK GQA+D +D  AA  +LG S    W+ ++  A S
Sbjct: 125 LQKQGIISSSGAETGYLQDLIYRLSKVGQAIDNDDLPAASSVLGPSSDAQWVQNINAAFS 184

Query: 486 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKG 665
           K+SSS E++     F+SSLA L  +VSK D + SKSAFV SA ALEKW  L G   QLKG
Sbjct: 185 KLSSSPEQRNVVDSFNSSLATLFTSVSKLDPESSKSAFVSSATALEKWIALAGLGGQLKG 244


>tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subsp.
           japonica GN=P0018H04.9 PE=2 SV=1
          Length = 239

 Score =  107 bits (267), Expect = 7e-22
 Identities = 57/120 (47%), Positives = 77/120 (64%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           ++++G I+S   ET  LQ  IY+LSK GQA+D ND  AA  +LG +    W+ ++  A +
Sbjct: 119 LQKQGVISSSGTETGYLQDLIYKLSKVGQAIDKNDLPAASSVLGPNSDAQWVQNINVAFT 178

Query: 486 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKG 665
           K SSS EE+     F+SSLA+L  +V+K D+D SKSAFV SA  LEKW    G + QLKG
Sbjct: 179 KFSSSPEEKNMVDSFNSSLASLITSVNKSDVDSSKSAFVSSATTLEKWIASAGLSGQLKG 238


>tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24389 PE=4 SV=1
          Length = 239

 Score =  107 bits (267), Expect = 7e-22
 Identities = 57/120 (47%), Positives = 77/120 (64%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           ++++G I+S   ET  LQ  IY+LSK GQA+D ND  AA  +LG +    W+ ++  A +
Sbjct: 119 LQKQGVISSSGTETGYLQDLIYKLSKVGQAIDKNDLPAASSVLGPNSDAQWVQNINVAFT 178

Query: 486 KVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKG 665
           K SSS EE+     F+SSLA+L  +V+K D+D SKSAFV SA  LEKW    G + QLKG
Sbjct: 179 KFSSSPEEKNMVDSFNSSLASLITSVNKSDVDSSKSAFVSSATTLEKWIASAGLSGQLKG 238


>tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021696 PE=4 SV=1
          Length = 241

 Score =  105 bits (261), Expect = 4e-21
 Identities = 58/122 (47%), Positives = 79/122 (64%), Gaps = 2/122 (1%)
 Frame = +3

Query: 306 IKRRGEINSFKEETAS--LQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKA 479
           ++++G I+S   ETA+  LQ  IY+LSK GQA+D ND  AA  +LG +    W+ ++  A
Sbjct: 119 LQKQGVISSSGTETATGYLQDLIYKLSKVGQAIDKNDLPAASSVLGPNSDAQWVQNINVA 178

Query: 480 LSKVSSSAEEQGEAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQL 659
            +K SSS EE+     F+SSLA+L  +V+K D+D SKSAFV SA  LEKW    G + QL
Sbjct: 179 FTKFSSSPEEKNMVDSFNSSLASLITSVNKSDVDSSKSAFVSSATTLEKWIASAGLSGQL 238

Query: 660 KG 665
           KG
Sbjct: 239 KG 240


>tr|A9SFH1|A9SFH1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233194 PE=4 SV=1
          Length = 262

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +3

Query: 309 KRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSK 488
           KR   IN F +E+  +Q A+Y+LS+AGQA+DG DFS A  +L +  S+ WI D++ AL K
Sbjct: 101 KRSTAINDFVKESGFVQTAVYKLSEAGQAIDGGDFSKATAVLAQQNSD-WIRDIQAALKK 159

Query: 489 VSSSAEEQGEAKVFSSSLANLQMA 560
           VSSS++E   A  F SSL +LQ A
Sbjct: 160 VSSSSDEVAVADTFRSSLTSLQAA 183


>tr|B6TLE6|B6TLE6_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea
           mays PE=2 SV=1
          Length = 211

 Score = 62.0 bits (149), Expect = 4e-08
 Identities = 30/69 (43%), Positives = 45/69 (65%)
 Frame = +3

Query: 306 IKRRGEINSFKEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALS 485
           ++++G I+S   ET  LQ  IY+LSK GQA+D +D  AA  +LG S    W+ ++  A S
Sbjct: 126 LQKQGIISSSGAETGYLQDLIYRLSKVGQAIDNDDLPAASSVLGPSSDAQWVQNINAAFS 185

Query: 486 KVSSSAEEQ 512
           K+SSS E++
Sbjct: 186 KLSSSPEQR 194


>tr|A8HY43|A8HY43_CHLRE Thylakoid lumenal protein OS=Chlamydomonas
           reinhardtii GN=TEF14 PE=4 SV=1
          Length = 196

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 36/111 (32%), Positives = 54/111 (48%)
 Frame = +3

Query: 336 KEETASLQAAIYQLSKAGQALDGNDFSAARKILGESPSEGWIADVEKALSKVSSSAEEQG 515
           ++E   +Q A+Y+L+K+G  L+  D   A   L ES    W+ D     S VS S     
Sbjct: 94  EQELVPVQKAVYKLAKSGSQLESGDLKGAASTLSES----WVGDFSTVASTVSGSTT--- 146

Query: 516 EAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQLKGL 668
            A     ++ ++Q A +K D   SK A+V     L+ W+  +G A  LKGL
Sbjct: 147 -AGKLVEAIKSVQAAAAKGDAAGSKRAYVSLVSDLQSWADASGLATSLKGL 196