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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950214
Clone id TST38A01NGRL0008_B02
Library
Length 656
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_B02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCGAAGAAGAACACATCGTAGAATATGTAATCAACGCTATAACGAGAACTTAGAAGTTA
TGGGTGGTGTAGATGATACCAAGGTGCAGAGTATGACGGGTTTGGCTGATTTGCAGCTGG
TCTAGCTACTTGTGCAGCTCCAGGAGCTCATTCCATGGGTGCAATATTGTCAGGGTGATC
CAATAAGGCTCATCGATCATGTCTTCTCTGATGAGATCCGTGAGCTTGTCGCGTCTCAAA
TGTGCTATGGGGCTGAGCCCAGCCCTCCCACATTCTGAATGTAGGAGGCGCAGCTCCACC
TTGGGCTTGAGGAATGGGACATCTACCATCCACAGCAATGCCAGTCATCCCTCCAGTCCC
ATACAGCTGGGCCTTTTTAATGAGTATGAGGTGTACAGAAGGTCTCTGTATGGTGGATTG
GCCTACAAGGCTCTCCTGGTCGATGCTGCGGGCACGCTTATCGTCCCTTCAGAGCCTGCT
GCCAAGGTCTATCACGATGTGGGGATTAAATATGGTGTGCAATGGTCAGAGTCTGAGATC
CTGAAGCGGTATCGCTGGGCATACGCACAGCCCTGGTCTCGTTCACGCTTGCGATATGAA
AATGACGCAAGGCCATTTTGGCAGTTCATAGTTGAGAAGGCCACTGGCTGCAGTGA
■■Homology search results ■■ -
sp_hit_id P98106
Definition sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus
Align length 49
Score (bit) 31.6
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950214|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_B02, 5'
         (656 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus GN=Selp PE=2...    32   3.8  
sp|O14262|YFP5_SCHPO Putative uncharacterized hydrolase C7D4.05 ...    30   8.5  

>sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus GN=Selp PE=2
           SV=1
          Length = 768

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 656 SLQPVAFSTMNCQNGLASFSYRKRERDQGCAYAQR--YRFRISDSDHCT 516
           SL+     TM+C + LA+F+Y     D  C +  +  YR R SD  HCT
Sbjct: 264 SLEAPLHGTMDCTHPLAAFAY-----DSSCKFECQPGYRMRGSDILHCT 307


>sp|O14262|YFP5_SCHPO Putative uncharacterized hydrolase C7D4.05
           OS=Schizosaccharomyces pombe GN=SPAC7D4.05 PE=2 SV=2
          Length = 225

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 427 KALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEI 540
           K +  DA GT++  S+P   VY +V  KYGV  +  EI
Sbjct: 11  KLVTFDAFGTILHLSKPVPIVYSEVAQKYGVHATIDEI 48
tr_hit_id A9NMJ3
Definition tr|A9NMJ3|A9NMJ3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 125
Score (bit) 150.0
E-value 7.0e-35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950214|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_B02, 5'
         (656 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMJ3|A9NMJ3_PICSI Putative uncharacterized protein OS=Picea...   150   7e-35
tr|A9NRW6|A9NRW6_PICSI Putative uncharacterized protein OS=Picea...   149   1e-34
tr|A9P0T4|A9P0T4_PICSI Putative uncharacterized protein OS=Picea...   148   3e-34
tr|A9NLF4|A9NLF4_PICSI Putative uncharacterized protein OS=Picea...   145   3e-33
tr|B6SLD8|B6SLD8_MAIZE Rhythmically expressed protein OS=Zea may...   140   5e-32
tr|A7QJJ5|A7QJJ5_VITVI Chromosome chr8 scaffold_106, whole genom...   139   2e-31
tr|Q9ZVB6|Q9ZVB6_ARATH Putative uncharacterized protein At2g4125...   134   6e-30
tr|Q8GRS0|Q8GRS0_ORYSJ Os07g0659400 protein OS=Oryza sativa subs...   132   2e-29
tr|Q4F886|Q4F886_ORYSJ DT-related protein OS=Oryza sativa subsp....   132   2e-29
tr|B8B5I9|B8B5I9_ORYSI Putative uncharacterized protein OS=Oryza...   131   3e-29
tr|B8APT4|B8APT4_ORYSI Putative uncharacterized protein OS=Oryza...   128   3e-28
tr|A3AI18|A3AI18_ORYSJ Putative uncharacterized protein OS=Oryza...   128   3e-28
tr|B6TFB5|B6TFB5_MAIZE Rhythmically expressed protein OS=Zea may...   125   2e-27
tr|A3BN18|A3BN18_ORYSJ Putative uncharacterized protein OS=Oryza...    87   7e-16
tr|A8J1M4|A8J1M4_CHLRE Predicted protein (Fragment) OS=Chlamydom...    82   3e-14
tr|A7QEF4|A7QEF4_VITVI Chromosome chr1 scaffold_84, whole genome...    82   3e-14
tr|A9SDR8|A9SDR8_PHYPA Predicted protein (Fragment) OS=Physcomit...    81   5e-14
tr|Q9M9T1|Q9M9T1_ARATH F14L17.7 protein OS=Arabidopsis thaliana ...    77   9e-13
tr|Q84WA5|Q84WA5_ARATH Putative uncharacterized protein At1g1431...    77   9e-13
tr|Q6AWS8|Q6AWS8_ARATH At1g14310 OS=Arabidopsis thaliana PE=2 SV=1     77   9e-13
tr|B6TNH8|B6TNH8_MAIZE HAD-superfamily hydrolase, subfamily IA, ...    77   1e-12
tr|Q6Z026|Q6Z026_ORYSJ Os08g0169800 protein OS=Oryza sativa subs...    72   2e-11
tr|B8BB56|B8BB56_ORYSI Putative uncharacterized protein OS=Oryza...    72   2e-11
tr|A6GIY9|A6GIY9_9DELT Putative uncharacterized protein OS=Plesi...    47   0.001
tr|Q0HQR4|Q0HQR4_SHESR SEC-C motif domain protein OS=Shewanella ...    38   0.48 
tr|Q7NKX4|Q7NKX4_GLOVI Gll1352 protein OS=Gloeobacter violaceus ...    36   2.4  
tr|Q6CJN1|Q6CJN1_KLULA KLLA0F17325p OS=Kluyveromyces lactis GN=K...    35   5.3  
tr|Q5KJC6|Q5KJC6_CRYNE Putative uncharacterized protein OS=Crypt...    35   5.3  
tr|A8P231|A8P231_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   9.0  

>tr|A9NMJ3|A9NMJ3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 321

 Score =  150 bits (379), Expect = 7e-35
 Identities = 73/125 (58%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +1

Query: 283 RRRSSTLGLRNGTSTIHSNASHPSSPIQLGLFNE-YEVYRRSLYGGLAYKALLVDAAGTL 459
           RRR    G R   STI S ++  +  +  G   E Y+ YRRSLYGGL +KALLVDA GTL
Sbjct: 60  RRRGIEGGRRRCLSTIASASTTETKEMSGGGEQEWYDKYRRSLYGGLTHKALLVDAVGTL 119

Query: 460 IVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWAYAQPWSRSRLRYENDARPFWQFIVEK 639
           ++PS+PAA++Y ++G+KYGV +SE EIL RYRWAY QPW  +RLR+ +DARPFWQF+V+ 
Sbjct: 120 VLPSQPAAQIYRNIGLKYGVCYSEDEILSRYRWAYQQPWPNTRLRFMDDARPFWQFVVQN 179

Query: 640 ATGCS 654
           ATGCS
Sbjct: 180 ATGCS 184


>tr|A9NRW6|A9NRW6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 321

 Score =  149 bits (377), Expect = 1e-34
 Identities = 72/125 (57%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +1

Query: 283 RRRSSTLGLRNGTSTIHSNASHPSSPIQLGLFNE-YEVYRRSLYGGLAYKALLVDAAGTL 459
           RRR    G R   S+I S ++  +  +  G   E Y+ YRRSLYGGL +KALLVDA GTL
Sbjct: 60  RRRGIEGGRRRCLSSIASTSTTETKEMSGGGEQEWYDKYRRSLYGGLTHKALLVDAVGTL 119

Query: 460 IVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWAYAQPWSRSRLRYENDARPFWQFIVEK 639
           ++PS+PAA++Y ++G+KYGV +SE EIL RYRWAY QPW  +RLR+ +DARPFWQF+V+ 
Sbjct: 120 VLPSQPAAQIYRNIGLKYGVCYSEDEILSRYRWAYQQPWPNTRLRFMDDARPFWQFVVQN 179

Query: 640 ATGCS 654
           ATGCS
Sbjct: 180 ATGCS 184


>tr|A9P0T4|A9P0T4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 321

 Score =  148 bits (374), Expect = 3e-34
 Identities = 71/125 (56%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +1

Query: 283 RRRSSTLGLRNGTSTIHSNASHPSSPIQLGLFNE-YEVYRRSLYGGLAYKALLVDAAGTL 459
           RRR    G R   S+I S ++  +  +  G   E Y+ YRRSLYGGL +KALL+DA GTL
Sbjct: 60  RRRGIEGGRRRCLSSIASTSTTETKEMSGGGEQEWYDKYRRSLYGGLTHKALLLDAVGTL 119

Query: 460 IVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWAYAQPWSRSRLRYENDARPFWQFIVEK 639
           ++PS+PAA++Y ++G+KYGV +SE EIL RYRWAY QPW  +RLR+ +DARPFWQF+V+ 
Sbjct: 120 VLPSQPAAQIYRNIGLKYGVCYSEDEILSRYRWAYQQPWPNTRLRFMDDARPFWQFVVQN 179

Query: 640 ATGCS 654
           ATGCS
Sbjct: 180 ATGCS 184


>tr|A9NLF4|A9NLF4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 251

 Score =  145 bits (365), Expect = 3e-33
 Identities = 62/90 (68%), Positives = 78/90 (86%)
 Frame = +1

Query: 385 YEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWAY 564
           Y+ YRRSLYGGL +KALLVDA GTL++PS+PAA++Y ++G+KYGV +SE EIL RYRWAY
Sbjct: 25  YDKYRRSLYGGLTHKALLVDAVGTLVLPSQPAAQIYRNIGLKYGVCYSEDEILSRYRWAY 84

Query: 565 AQPWSRSRLRYENDARPFWQFIVEKATGCS 654
            QPW  +RLR+ +DARPFWQF+V+ ATGCS
Sbjct: 85  QQPWPNTRLRFMDDARPFWQFVVQNATGCS 114


>tr|B6SLD8|B6SLD8_MAIZE Rhythmically expressed protein OS=Zea mays
           PE=2 SV=1
          Length = 272

 Score =  140 bits (354), Expect = 5e-32
 Identities = 62/91 (68%), Positives = 74/91 (81%)
 Frame = +1

Query: 382 EYEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWA 561
           EY  YRR++YG + +KA+LVDAAGTL+ P+EP A+VY  +G KYGV +SE EIL RYRWA
Sbjct: 45  EYYDYRRAMYGDITHKAILVDAAGTLLAPTEPMAQVYRTIGQKYGVDYSEDEILMRYRWA 104

Query: 562 YAQPWSRSRLRYENDARPFWQFIVEKATGCS 654
           YAQPW RSRLRY ND RPFWQ+IV  +TGCS
Sbjct: 105 YAQPWGRSRLRYVNDGRPFWQYIVSSSTGCS 135


>tr|A7QJJ5|A7QJJ5_VITVI Chromosome chr8 scaffold_106, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000664001
           PE=4 SV=1
          Length = 303

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/114 (58%), Positives = 86/114 (75%), Gaps = 7/114 (6%)
 Frame = +1

Query: 334 SNASHPSSPIQLGL-------FNEYEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVY 492
           S+A+  S+  +LGL         +YE YR++LYG + +KALLVDA GTL+VPS+P A++Y
Sbjct: 53  SSAAVASNESRLGLGGFEVLGLKDYEEYRKALYGEITHKALLVDAVGTLLVPSQPMAQIY 112

Query: 493 HDVGIKYGVQWSESEILKRYRWAYAQPWSRSRLRYENDARPFWQFIVEKATGCS 654
             +G KYGV++SE+EIL RYR AYAQPW RSRLRY ND RPFWQ+IV  +TGCS
Sbjct: 113 RKIGEKYGVEYSETEILNRYRRAYAQPWGRSRLRYVNDGRPFWQYIVSFSTGCS 166


>tr|Q9ZVB6|Q9ZVB6_ARATH Putative uncharacterized protein At2g41250
           OS=Arabidopsis thaliana GN=At2g41250 PE=2 SV=1
          Length = 290

 Score =  134 bits (336), Expect = 6e-30
 Identities = 60/94 (63%), Positives = 76/94 (80%)
 Frame = +1

Query: 373 LFNEYEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEILKRY 552
           +  EYE YRRSLYG + +KALLVDA GTL+VP++P A++Y ++G KYGV++SE+EIL RY
Sbjct: 60  VLKEYEDYRRSLYGEITHKALLVDAVGTLLVPAQPTAQIYKNIGEKYGVEYSEAEILTRY 119

Query: 553 RWAYAQPWSRSRLRYENDARPFWQFIVEKATGCS 654
           R AY +PW  S LRY NDARPFWQ+IV  +TGCS
Sbjct: 120 RRAYQKPWGGSHLRYVNDARPFWQYIVTASTGCS 153


>tr|Q8GRS0|Q8GRS0_ORYSJ Os07g0659400 protein OS=Oryza sativa subsp.
           japonica GN=OJ1477_F01.122 PE=4 SV=1
          Length = 304

 Score =  132 bits (331), Expect = 2e-29
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = +1

Query: 382 EYEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWA 561
           EY  YRR++YG + +KA+LVDAAGTL+ P+EP A+VY  +G KYGV +SE EIL RYR A
Sbjct: 55  EYYDYRRAIYGDITHKAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRRA 114

Query: 562 YAQPWSRSRLRYENDARPFWQFIVEKATGCS 654
           YAQPW RSRLRY +D RPFWQ IV  +TGCS
Sbjct: 115 YAQPWGRSRLRYVDDGRPFWQHIVSSSTGCS 145


>tr|Q4F886|Q4F886_ORYSJ DT-related protein OS=Oryza sativa subsp.
           japonica GN=Dr1 PE=2 SV=1
          Length = 232

 Score =  132 bits (331), Expect = 2e-29
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = +1

Query: 382 EYEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWA 561
           EY  YRR++YG + +KA+LVDAAGTL+ P+EP A+VY  +G KYGV +SE EIL RYR A
Sbjct: 5   EYYDYRRAIYGDITHKAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRRA 64

Query: 562 YAQPWSRSRLRYENDARPFWQFIVEKATGCS 654
           YAQPW RSRLRY +D RPFWQ IV  +TGCS
Sbjct: 65  YAQPWGRSRLRYVDDGRPFWQHIVSSSTGCS 95


>tr|B8B5I9|B8B5I9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27188 PE=4 SV=1
          Length = 282

 Score =  131 bits (330), Expect = 3e-29
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = +1

Query: 382 EYEVYRRSLYGGLAYKALLVDAAGTLIVPSEPAAKVYHDVGIKYGVQWSESEILKRYRWA 561
           EY  YRR++YG + +KA+LVDAAGTL+ P+EP A+VY  +G KYGV +SE EIL RYR A
Sbjct: 55  EYYDYRRAIYGDITHKAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRRA 114

Query: 562 YAQPWSRSRLRYENDARPFWQFIVEKATGCS 654
           YAQPW RSRLRY +D RPFWQ IV  +TGCS
Sbjct: 115 YAQPWGRSRLRYVDDGRPFWQHIVSASTGCS 145