DK950240 |
Clone id |
TST38A01NGRL0008_C04 |
Library |
TST38 |
Length |
681 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_C04. 5' end sequence. |
Accession |
DK950240 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL103Contig1 |
Sequence |
GTCAGAAGATCGGCCGCAGCGATGGCCAAGTCTGCAACGAGAGCCCCTCGCAACAAGGAG CTAGTGCGTGGCGTTGGGCGCCTCTCACGATCGCGTGTCTACCACAAGCGCGGCCTGTGG GCAATTAAGGCCAAGCATGGTGGATCCTTTCCGACCCATGCCAAGAAGGAGGTGGCCGCC CCAGCTGCCGCAAAGGCACCCAAGTTCTACCCAGCAGACGATGTGCCGAAGCCTCTGTGC AACAAGCGGGTAATCAAGAAGACCAAGATCAGGGCCAGCATTACCCCAGGAACAGTGCTC ATCTTATTGGCTGGTCACTTCAAGGGCAAGCGTGCTGTCTTCTTGAAGCAGCTAGATTCT GGCTTGCTACTGGTTACAGGGCCTTTCAAACTGAATGGAGTTCCTCTCCGCAGAGTCAAC CAAGCATATGTGATCGCCACATCCACTAAGCTTGATGTCAGCTCGGTAGATGCTAGTAAA ATCTCCGATTCTTATTTTAAAAGAGAAGAAGTGAAGAAGAAAAAGGGGGAGAGCGAGTTT TTCGAGGGCGAGAAAGAGGACTCAAAGTCCGTGCCAGCTGAGAAGAAGGAAGAACAAAAA GCTGTTGATTCCAAGCTGTTGGCGGTTGTAGAGTCTATCCCGGACATGAAATCATATCTC AGTGCTAGGTTTAGTTTGAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34091 |
Definition |
sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum |
Align length |
195 |
Score (bit) |
210.0 |
E-value |
6.0e-54 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950240|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_C04, 5' (681 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum... 210 6e-54 sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis t... 202 1e-51 sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis t... 201 2e-51 sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis t... 201 4e-51 sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces... 134 6e-31 sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomy... 130 6e-30 sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium di... 127 4e-29 sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces... 127 5e-29 sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanig... 125 2e-28 sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus ... 125 2e-28 sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6... 124 4e-28 sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=... 124 4e-28 sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RP... 124 4e-28 sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=... 124 5e-28 sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis e... 107 6e-23 sp|A8ABY5|RL14E_IGNH4 50S ribosomal protein L14e OS=Ignicoccus h... 47 1e-04 sp|Q4JAJ9|RL14E_SULAC 50S ribosomal protein L14e OS=Sulfolobus a... 46 2e-04 sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum ... 43 0.001 sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum ... 42 0.002 sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum ... 42 0.003 sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum ... 42 0.003 sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e OS=Sulfolobus t... 42 0.004 sp|Q980C1|RL14E_SULSO 50S ribosomal protein L14e OS=Sulfolobus s... 42 0.004 sp|A4YCT0|RL14E_METS5 50S ribosomal protein L14e OS=Metallosphae... 42 0.004 sp|A3DND4|RL14E_STAMF 50S ribosomal protein L14e OS=Staphylother... 41 0.007 sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pe... 39 0.020 sp|Q8TX43|RL14E_METKA 50S ribosomal protein L14e OS=Methanopyrus... 39 0.026 sp|P59937|RL14E_PYRHO 50S ribosomal protein L14e OS=Pyrococcus h... 35 0.37 sp|Q8U2L5|RL14E_PYRFU 50S ribosomal protein L14e OS=Pyrococcus f... 35 0.37 sp|Q9UZJ5|RL14E_PYRAB 50S ribosomal protein L14e OS=Pyrococcus a... 35 0.37
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1 Length = 234
Score = 210 bits (534), Expect = 6e-54 Identities = 113/195 (57%), Positives = 127/195 (65%), Gaps = 1/195 (0%) Frame = +1
Query: 100 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 279 YHKRGLWAIKAK+GG FP H DDV KPL NKR K TK+RAS Sbjct: 30 YHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRAS 89
Query: 280 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 459 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVIATSTK+D+ Sbjct: 90 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDI 149
Query: 460 SSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXV-PAEKKEEQKAVDSKLLAVVES 636 S V+ K D Y V P EKK++QKAVD LL +E Sbjct: 150 SGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEG 209
Query: 637 IPDMKSYLSARFSLK 681 +P++K+YL ARFSLK Sbjct: 210 VPELKAYLGARFSLK 224
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1 Length = 233
Score = 202 bits (515), Expect = 1e-51 Identities = 107/195 (54%), Positives = 126/195 (64%), Gaps = 1/195 (0%) Frame = +1
Query: 100 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 279 YHKRGLWAIKAK+GG FP H +DV KPL N+R K TK+RAS Sbjct: 29 YHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRAS 88
Query: 280 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 459 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVI TSTK+D+ Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
Query: 460 SSVDASKISDSY-XXXXXXXXXXXXXXXXXXXXXXXXXVPAEKKEEQKAVDSKLLAVVES 636 S V K D Y +P KK++QKAVD+ L+ +E+ Sbjct: 149 SGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEA 208
Query: 637 IPDMKSYLSARFSLK 681 +P++K+YL ARFSLK Sbjct: 209 VPELKTYLGARFSLK 223
>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1 Length = 233
Score = 201 bits (512), Expect = 2e-51 Identities = 106/194 (54%), Positives = 125/194 (64%), Gaps = 1/194 (0%) Frame = +1
Query: 100 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 279 YHKRGLWAIKAK+GG FP H +DV KPL N+R K TK++AS Sbjct: 29 YHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKAS 88
Query: 280 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 459 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVI TSTK+D+ Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDI 148
Query: 460 SSVDASKISDSY-XXXXXXXXXXXXXXXXXXXXXXXXXVPAEKKEEQKAVDSKLLAVVES 636 S V+ K D Y +P EKKE+QK VD+ L+ +E+ Sbjct: 149 SGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEA 208
Query: 637 IPDMKSYLSARFSL 678 +P++K YL ARFSL Sbjct: 209 VPELKVYLGARFSL 222
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1 Length = 233
Score = 201 bits (510), Expect = 4e-51 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Frame = +1
Query: 100 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 279 YHKRGLWAIKAK+GG FP H +DV KPL N+R K K+RAS Sbjct: 29 YHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRAS 88
Query: 280 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 459 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVI TSTK+D+ Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
Query: 460 SSVDASKISDSY-XXXXXXXXXXXXXXXXXXXXXXXXXVPAEKKEEQKAVDSKLLAVVES 636 S V K D Y +P KK++QKAVD+ L+ +E+ Sbjct: 149 SGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEA 208
Query: 637 IPDMKSYLSARFSLK 681 +P++K+YL ARFSLK Sbjct: 209 VPELKTYLGARFSLK 223
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4 Length = 176
Score = 134 bits (336), Expect = 6e-31 Identities = 73/155 (47%), Positives = 93/155 (60%) Frame = +1
Query: 217 DDVPKPLCNKRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLN 396 +DV P ++ ++ K+RAS+ PGTVLILLAG F+GKR V+LK L+ LLVTGPFK+N Sbjct: 13 EDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVN 72
Query: 397 GVPLRRVNQAYVIATSTKLDVSSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXVP 576 GVPLRRVN YVIATSTK+ V V+ K + Y + Sbjct: 73 GVPLRRVNARYVIATSTKVSVEGVNVEKFNVEY-FAKEKLTKKEKKEANLFPEQQTKEIK 131
Query: 577 AEKKEEQKAVDSKLLAVVESIPDMKSYLSARFSLK 681 E+ E+QK VD LLA ++ P +K YLSA FSLK Sbjct: 132 TERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLK 166
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2 Length = 195
Score = 130 bits (327), Expect = 6e-30 Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 1/155 (0%) Frame = +1
Query: 217 DDVPKPLCNKRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLN 396 ++VPK ++ ++ TK+RAS+ PGTV ILLAG F+GKR V L QL+ L+VTGP+K+N Sbjct: 33 ENVPKKA--RKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED-TLVVTGPYKVN 89
Query: 397 GVPLRRVNQAYVIATST-KLDVSSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXV 573 GVP+RRVN YVIATS K+DVS V K + +Y + Sbjct: 90 GVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAPKNAL 149
Query: 574 PAEKKEEQKAVDSKLLAVVESIPDMKSYLSARFSL 678 PAE+ +QKAVD+KLL +++IP+MK YL+A F+L Sbjct: 150 PAERIADQKAVDAKLLPAIKAIPNMKEYLAASFAL 184
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=3 SV=1 Length = 236
Score = 127 bits (320), Expect = 4e-29 Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 2/148 (1%) Frame = +1
Query: 244 KRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQ 423 K+V +K +R SITPGTVLI+LAG F GKR V LKQLDSGL+L+TGPFK+NGVPLRR++Q Sbjct: 79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQ 138
Query: 424 AYVIATSTKLDVSSVD-ASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXVPAEKK-EEQ 597 YVIATSTK+DVSSV A+ I+D+Y A+ + +Q Sbjct: 139 RYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQ 198
Query: 598 KAVDSKLLAVVESIPDMKSYLSARFSLK 681 K+VDS +LAV++ + YL +F LK Sbjct: 199 KSVDSAILAVLKKEKFLTVYLKTKFYLK 226
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2 Length = 176
Score = 127 bits (319), Expect = 5e-29 Identities = 70/155 (45%), Positives = 92/155 (59%) Frame = +1
Query: 217 DDVPKPLCNKRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLN 396 +DV ++ + K+RAS+ PGTVLILLAG F+GKR V+LK L+ LL++GPFK+N Sbjct: 13 EDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVN 72
Query: 397 GVPLRRVNQAYVIATSTKLDVSSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXVP 576 GVPLRRVN YVIATSTK+ V V+ K + Y + Sbjct: 73 GVPLRRVNARYVIATSTKVSVEGVNVEKFNVEY-FAKEKLTKKEKKEANLFPEQQNKEIK 131
Query: 577 AEKKEEQKAVDSKLLAVVESIPDMKSYLSARFSLK 681 AE+ E+QK VD L+A ++ P +K YLSA FSLK Sbjct: 132 AERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLK 166
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3 Length = 288
Score = 125 bits (315), Expect = 2e-28 Identities = 71/159 (44%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Frame = +1
Query: 217 DDVPKPLCN--KRVIKK--TKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGP 384 +DVP+ L + K+ + K+RASITPGTVLI+L G +GKR VFLKQL SGLLLVTGP Sbjct: 119 EDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGP 178
Query: 385 FKLNGVPLRRVNQAYVIATSTKLDVSSVDASK-ISDSYXXXXXXXXXXXXXXXXXXXXXX 561 LN VPLRR +Q +VIATSTK+D+S+V K ++D+Y Sbjct: 179 LNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKE 238
Query: 562 XXXVPAEKKEEQKAVDSKLLAVVESIPDMKSYLSARFSL 678 + ++K +QKAVDS++L ++++P ++ YL + F+L Sbjct: 239 RYQISEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFAL 277
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5 Length = 298
Score = 125 bits (314), Expect = 2e-28 Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Frame = +1
Query: 217 DDVPKPLCN--KRVIKK--TKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGP 384 +DVP+ L + K+ + ++R+SITPGTVLI+L G +GKR VFLKQL SGLLLVTGP Sbjct: 129 EDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGP 188
Query: 385 FKLNGVPLRRVNQAYVIATSTKLDVSSVDASK-ISDSYXXXXXXXXXXXXXXXXXXXXXX 561 LN VPLRR +Q +VIATSTK+D+S V K ++D+Y Sbjct: 189 LALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKE 248
Query: 562 XXXVPAEKKEEQKAVDSKLLAVVESIPDMKSYLSARFSL 678 + ++K +QKAVDS++L ++++P ++ YL ++FSL Sbjct: 249 KYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSL 287
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9Y8 |
Definition |
tr|A9S9Y8|A9S9Y8_PHYPA 60S ribosomal protein L6 OS=Physcomitrella patens subsp. patens |
Align length |
195 |
Score (bit) |
223.0 |
E-value |
7.0e-57 |
Report |
|