| DK950246 |
| Clone id |
TST38A01NGRL0008_C10 |
| Library |
TST38 |
| Length |
644 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_C10. 5' end sequence. |
| Accession |
DK950246 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL3553Contig1 |
| Sequence |
CACACCCGCACACTCATCCCTCAACACGCACACCGGCTCACACACATTGACCCACAGTGT AAGCTGCCATGGCTTCCTCTGCCGTGGCTGTGGGCGCTTTCGAGCTAAGAGACATTGATG AAGCATGTCAACGAAGACAACCCATTGCATGTGCAGCTCCTGCTATGCAGCCATGGAACC ATAACCTGAAGAGGGAGACGTTTTTACAGAGAAGCTCTCAACCCACCCTCCGTGAGTCTC AAAGGAGAGGTTCTTTGAAATGCTGTGCTGCCATTCTCGAGGGGGACTTGAGAACTTCCC ATCATTACCGCTCGTCGGAGCAGAGAGTCTACGATGTTGTTCTTAAGCAGGCGGCCCTCA TGGCAAAGAAAGCTGCACAAACACCAGCAGAAACCCCTGTTCTTGTCCCAGGAGGAGAAG GGGATCTAGGTGGTCTCACTCTGGATTTCACCCTGCAAGTCTCACCGGAGCTTCTAAGAG AAGCATACACAAGATGTGGTGAAGTGTGTGCGGAATATGCCAAAACCTTTTACCTAGGTA CAAAGCTGATGACTCCTGAGAGACAGCGAGCCATTTGGGCCATCTATGTATGGTGCAGGC GGACTGATGAAATAGTGGATGGGCCCAATGCGCCCCACATTACA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9SSU8 |
| Definition |
sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus carota |
| Align length |
112 |
| Score (bit) |
116.0 |
| E-value |
9.0e-26 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950246|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_C10, 5' (644 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus c... 116 9e-26 sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic OS=Cucumis ... 116 9e-26 sp|P37273|PSY2_SOLLC Phytoene synthase 2, chloroplastic (Fragmen... 114 3e-25 sp|P37271|PSY_ARATH Phytoene synthase, chloroplastic OS=Arabidop... 114 4e-25 sp|P37272|PSY_CAPAN Phytoene synthase, chloroplastic OS=Capsicum... 112 2e-24 sp|P53797|PSY_NARPS Phytoene synthase, chloroplastic OS=Narcissu... 112 2e-24 sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic OS=Solan... 110 8e-24 sp|P49085|PSY_MAIZE Phytoene synthase, chloroplastic OS=Zea mays... 107 5e-23 sp|P37294|CRTB_SYNY3 Phytoene synthase OS=Synechocystis sp. (str... 86 2e-16 sp|P37269|CRTB_SYNE7 Phytoene synthase OS=Synechococcus elongatu... 83 1e-15 sp|O07333|CRTY_SPIPL Phytoene synthase OS=Spirulina platensis GN... 81 5e-15 sp|P54977|CRTB_STRGR Phytoene synthase OS=Streptomyces griseus G... 50 1e-05 sp|Q4L976|CRTM_STAHJ Dehydrosqualene synthase OS=Staphylococcus ... 45 3e-04 sp|P37270|CRTB_THET2 Phytoene synthase OS=Thermus thermophilus (... 42 0.004 sp|P65860|CRTB_MYCTU Probable phytoene synthase OS=Mycobacterium... 40 0.010 sp|P65861|CRTB_MYCBO Probable phytoene synthase OS=Mycobacterium... 40 0.010 sp|Q8NUQ5|CRTM_STAAW Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|A9JQL9|CRTM_STAAU Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q6G6B2|CRTM_STAAS Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q7A3E1|CRTM_STAAN Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q99R75|CRTM_STAAM Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|O07854|CRTM_STAAE Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q5HCY8|CRTM_STAAC Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q2YWE7|CRTM_STAAB Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q2FV59|CRTM_STAA8 Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|Q2FDU5|CRTM_STAA3 Dehydrosqualene synthase OS=Staphylococcus ... 39 0.023 sp|P21683|CRTB_PANAN Phytoene synthase OS=Pantoea ananas GN=crtB... 37 0.067 sp|P22872|CRTB_ESCVU Phytoene synthase OS=Escherichia vulneris G... 37 0.067 sp|P55350|Y4AC_RHISN Putative phytoene synthase OS=Rhizobium sp.... 37 0.088 sp|P54975|CRTB_PARSN Phytoene synthase OS=Paracoccus sp. (strain... 34 0.74
>sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1 Length = 398
Score = 116 bits (291), Expect = 9e-26 Identities = 60/112 (53%), Positives = 67/112 (59%) Frame = +3
Query: 309 RSSEQRVYDVVXXXXXXXXXXXXXTPAETXXXXXXXXXXXXXXXXXXXXQVSPELLREAY 488 R+SE+RVY+VV + S LL EAY Sbjct: 52 RTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMKSWNLLNEAY 111
Query: 489 TRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 RCGEVCAEYAKTFYLGT LMTPER+RA+WAIYVWCRRTDE+VDGPNA HIT Sbjct: 112 DRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIYVWCRRTDELVDGPNASHIT 163
>sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1 Length = 422
Score = 116 bits (291), Expect = 9e-26 Identities = 52/58 (89%), Positives = 54/58 (93%) Frame = +3
Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 LL EAY RCGEVCAEYAKTFYLGT LMTPERQ+AIWAIYVWCRRTDE+VDGPNA HIT Sbjct: 132 LLNEAYDRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIYVWCRRTDELVDGPNASHIT 189
>sp|P37273|PSY2_SOLLC Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1 Length = 310
Score = 114 bits (286), Expect = 3e-25 Identities = 51/58 (87%), Positives = 54/58 (93%) Frame = +3
Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 LL EAY RCGEVCAEYAKTFYLGT LMTP+R+RAIWAIYVWCRRTDE+VDGPNA HIT Sbjct: 12 LLSEAYDRCGEVCAEYAKTFYLGTMLMTPDRRRAIWAIYVWCRRTDELVDGPNASHIT 69
>sp|P37271|PSY_ARATH Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2 Length = 422
Score = 114 bits (285), Expect = 4e-25 Identities = 52/61 (85%), Positives = 55/61 (90%) Frame = +3
Query: 462 SPELLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHI 641 S LL EAY RCGEVCAEYAKTFYLGT LMTPER++AIWAIYVWCRRTDE+VDGPNA HI Sbjct: 124 SLSLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHI 183
Query: 642 T 644 T Sbjct: 184 T 184
>sp|P37272|PSY_CAPAN Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1 Length = 419
Score = 112 bits (280), Expect = 2e-24 Identities = 50/58 (86%), Positives = 53/58 (91%) Frame = +3
Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 LL EAY RC EVCAEYAKTFYLGT LMTPER++AIWAIYVWCRRTDE+VDGPNA HIT Sbjct: 128 LLSEAYDRCSEVCAEYAKTFYLGTMLMTPERRKAIWAIYVWCRRTDELVDGPNASHIT 185
>sp|P53797|PSY_NARPS Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1 Length = 423
Score = 112 bits (279), Expect = 2e-24 Identities = 50/58 (86%), Positives = 54/58 (93%) Frame = +3
Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 LL++AY RCGEVCAEYAKTFYLGT LMTPER+RAIWAIYVWCRRTDE+VDG NA HIT Sbjct: 124 LLKDAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGHNASHIT 181
>sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2 Length = 412
Score = 110 bits (274), Expect = 8e-24 Identities = 50/58 (86%), Positives = 53/58 (91%) Frame = +3
Query: 471 LLREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 LL EAY RCGEVCAEYAKTF LGT LMTPER+RAIWAIYVWCRRTDE+VDGPNA +IT Sbjct: 116 LLSEAYDRCGEVCAEYAKTFNLGTMLMTPERRRAIWAIYVWCRRTDELVDGPNASYIT 173
>sp|P49085|PSY_MAIZE Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1 Length = 410
Score = 107 bits (267), Expect = 5e-23 Identities = 47/57 (82%), Positives = 52/57 (91%) Frame = +3
Query: 474 LREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 L+EAY RCGE+C EYAKTFYLGT LMT ER+RAIWAIYVWCRRTDE+VDGPNA +IT Sbjct: 115 LKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYIT 171
>sp|P37294|CRTB_SYNY3 Phytoene synthase OS=Synechocystis sp. (strain PCC 6803) GN=crtB PE=3 SV=1 Length = 337
Score = 85.9 bits (211), Expect = 2e-16 Identities = 38/57 (66%), Positives = 45/57 (78%) Frame = +3
Query: 474 LREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNAPHIT 644 + EAY C +V A+YAKTFYLGT LM P ++RAIWAIY+WCRRTDE+VDGP A T Sbjct: 45 VEEAYEICRQVTAQYAKTFYLGTLLMPPAKRRAIWAIYLWCRRTDELVDGPQAATTT 101
>sp|P37269|CRTB_SYNE7 Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2 Length = 308
Score = 82.8 bits (203), Expect = 1e-15 Identities = 36/53 (67%), Positives = 42/53 (79%) Frame = +3
Query: 474 LREAYTRCGEVCAEYAKTFYLGTKLMTPERQRAIWAIYVWCRRTDEIVDGPNA 632 L EAY C ++ A YAKTFYLGT LM +++AIWAIYVWCRRTDE+VDGP A Sbjct: 16 LSEAYEECRQITARYAKTFYLGTLLMPEAKRQAIWAIYVWCRRTDELVDGPQA 68
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9TUA5 |
| Definition |
tr|A9TUA5|A9TUA5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
58 |
| Score (bit) |
118.0 |
| E-value |
3.0e-25 |
| Report |
 |