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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950266
Clone id TST38A01NGRL0008_D06
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_D06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGTTGGGGAAGATCGCTTCTACAACGATAATCTTTAGTTCTACGTCCACTTCAATTTTGG
GGCGTATCGCTTAAGCAATCCCTAGCAGTAGGCACGCCCTGCAGGATTCGAACCTACGAC
ATCGGGTTTTGGAGACCCGCGTTCTACCGTACTGAACTAAAGGCGCCTCTTTCTGGAAGG
GGTTACTTTGACCTATGAAGGAAGTGGGAGTTGCAGCATCTTTCCTCCCCAGCGTGAAGG
GAAGAAAAAAGTGTTGACTTCCCTTTTTTTTTTTTGTAGGGAGAAAGGAGGTAGAGATCA
AGTAAGTGGGGCAACAACTGTCACCCCTGCCAGTTGTTCCACGTATAGGAGATAGGGATG
ACGGGATTTGAACCTGCGACATTTTGTACCCAAAACAAACACGCTACCGAGCTGCGTTAC
ATCCCTTTTGGTTGTACTTGATACCATCAACCCCTTGCTTGTTATTCGATCCAATTGATT
ATAATCTTTTCCCACGAATACTGGCTACCGTCGAAGTAGGAATGCATTTTTTGGGAAGCT
GCTAATCCCTGCCCTCTCTTTATTTTAATTCCCACTTTTCATTCTCTACACCACTTCTCG
ACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTAT
■■Homology search results ■■ -
sp_hit_id Q8RY17
Definition sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana
Align length 101
Score (bit) 33.9
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950266|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_D06, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS...    34   0.73 
sp|P0AAJ7|FDOH_SHIFL Formate dehydrogenase-O, iron-sulfur subuni...    30   8.1  
sp|P0AAJ5|FDOH_ECOLI Formate dehydrogenase-O, iron-sulfur subuni...    30   8.1  
sp|P0AAJ6|FDOH_ECOL6 Formate dehydrogenase-O, iron-sulfur subuni...    30   8.1  

>sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22
           OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1
          Length = 751

 Score = 33.9 bits (76), Expect = 0.73
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
 Frame = -3

Query: 487 RL*SIGSNNKQGVDGIKYNQKGCNAA-------R*RVCFGYKMSQVQIPSS--------L 353
           RL S+G +N+  +  I+    GC ++         ++C GY   Q +IP+         L
Sbjct: 140 RLVSVGCDNRALITDIESQITGCESSCDGDKSRLDKICGGYTCCQAKIPADRPQVIGVDL 199

Query: 352 SPIRGTTGRGDSCCPTYLISTSFLPTKKKKGSQHFFLPFTL 230
               G T +G +C   +L + ++ P    +  Q +   FT+
Sbjct: 200 ESSGGNTTQGGNCKVAFLTNETYSPANVTEPEQFYTNGFTV 240


>sp|P0AAJ7|FDOH_SHIFL Formate dehydrogenase-O, iron-sulfur subunit
           OS=Shigella flexneri GN=fdoH PE=3 SV=1
          Length = 300

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 93  HALQDSNLRHRVLETRVLPY*TKGASFWKGLL*PMKEVGVAASFLPSV 236
           H     NL H + E    P  ++   FWKG+  P+  VG AA+F  S+
Sbjct: 229 HHADKPNLYHGLPEN---PEISETVKFWKGIWKPLAAVGFAATFAASI 273


>sp|P0AAJ5|FDOH_ECOLI Formate dehydrogenase-O, iron-sulfur subunit
           OS=Escherichia coli (strain K12) GN=fdoH PE=1 SV=1
          Length = 300

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 93  HALQDSNLRHRVLETRVLPY*TKGASFWKGLL*PMKEVGVAASFLPSV 236
           H     NL H + E    P  ++   FWKG+  P+  VG AA+F  S+
Sbjct: 229 HHADKPNLYHGLPEN---PEISETVKFWKGIWKPLAAVGFAATFAASI 273


>sp|P0AAJ6|FDOH_ECOL6 Formate dehydrogenase-O, iron-sulfur subunit
           OS=Escherichia coli O6 GN=fdoH PE=3 SV=1
          Length = 300

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 93  HALQDSNLRHRVLETRVLPY*TKGASFWKGLL*PMKEVGVAASFLPSV 236
           H     NL H + E    P  ++   FWKG+  P+  VG AA+F  S+
Sbjct: 229 HHADKPNLYHGLPEN---PEISETVKFWKGIWKPLAAVGFAATFAASI 273
tr_hit_id A4QM24
Definition tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis
Align length 27
Score (bit) 53.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950266|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_D06, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis PE=4 SV=1            54   1e-05
tr|A7QDC0|A7QDC0_VITVI Chromosome undetermined scaffold_80, whol...    49   3e-04
tr|A3WQ21|A3WQ21_9GAMM Putative uncharacterized protein OS=Idiom...    39   0.35 
tr|A7A485|A7A485_BIFAD Putative uncharacterized protein OS=Bifid...    38   0.60 
tr|A4CP42|A4CP42_9FLAO Putative uncharacterized protein OS=Robig...    35   3.9  
tr|A0YKG4|A0YKG4_9CYAN 50S ribosomal protein L19 OS=Lyngbya sp. ...    35   5.0  
tr|A3IDC8|A3IDC8_9BACI Putative uncharacterized protein OS=Bacil...    34   6.5  
tr|B1MJM2|B1MJM2_MYCA9 Possible arylsulfatase AtsA OS=Mycobacter...    34   6.6  

>tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis PE=4 SV=1
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = -1

Query: 429 KRDVTQLGSVFVLGTKCRRFKSRHPYL 349
           +RDV QLGSVFVLGTKCRRFKS HPYL
Sbjct: 3   RRDVAQLGSVFVLGTKCRRFKSCHPYL 29


>tr|A7QDC0|A7QDC0_VITVI Chromosome undetermined scaffold_80, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035781001 PE=4 SV=1
          Length = 55

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -1

Query: 429 KRDVTQLGSVFVLGTKCRRFKSRHPYLL 346
           +RDV QLGS FVLGTKC  FKS HPYLL
Sbjct: 25  ERDVAQLGSAFVLGTKCHGFKSCHPYLL 52


>tr|A3WQ21|A3WQ21_9GAMM Putative uncharacterized protein
           OS=Idiomarina baltica OS145 GN=OS145_12211 PE=4 SV=1
          Length = 109

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +1

Query: 352 IGMTGFEPATFCTQNKHATELRYIPF 429
           +G TGFEPAT  TQ K AT+LRY PF
Sbjct: 2   VGETGFEPATPWTQTKCATKLRYSPF 27


>tr|A7A485|A7A485_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_00637
           PE=4 SV=1
          Length = 79

 Score = 37.7 bits (86), Expect = 0.60
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 352 IGMTGFEPATFCTQNKHATELRYIPFG 432
           +G+ GFEPA   ++ K AT+LRY PFG
Sbjct: 23  VGLAGFEPAASSSRTKRATKLRYSPFG 49


>tr|A4CP42|A4CP42_9FLAO Putative uncharacterized protein
           OS=Robiginitalea biformata HTCC2501 GN=RB2501_01246 PE=4
           SV=1
          Length = 128

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +1

Query: 352 IGMTGFEPATFCTQNKHATELRYIPFG 432
           +GMTGFEPAT  T   ++T L YIP G
Sbjct: 99  VGMTGFEPATTRTPCVYSTRLNYIPNG 125


>tr|A0YKG4|A0YKG4_9CYAN 50S ribosomal protein L19 OS=Lyngbya sp. PCC
           8106 GN=L8106_06869 PE=4 SV=1
          Length = 43

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 92  ARPAGFEPTTSGFGDPRST 148
           ARP G EP+TSGFGD RST
Sbjct: 24  ARPEGLEPSTSGFGDLRST 42


>tr|A3IDC8|A3IDC8_9BACI Putative uncharacterized protein OS=Bacillus
           sp. B14905 GN=BB14905_20880 PE=4 SV=1
          Length = 60

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -2

Query: 398 LFWVQNVAGSNPVIPISYTW 339
           L W Q V GSNPVIPI Y W
Sbjct: 5   LVWDQGVVGSNPVIPIIYKW 24


>tr|B1MJM2|B1MJM2_MYCA9 Possible arylsulfatase AtsA OS=Mycobacterium
           abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_4307
           PE=4 SV=1
          Length = 835

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 124 GFWRPAFYRTELKAPLSGRGYFDL*RKWELQHL 222
           G W   +  + L AP+SG+G+FD   KWEL H+
Sbjct: 562 GIWEDGWKASALHAPISGKGHFDQ-DKWELFHV 593