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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950271
Clone id TST38A01NGRL0008_D11
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_D11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TAGACAAATACCGTCCCCATGCGCTCGACAAGGTGATGGTGCACGTCGAAGAGGCTCAGC
AACTCAAGCAGCTGGTAGCTCAGGGTGATTGCCCTCACCTTCTCTTCTATGGGCCGTCAG
GGGCGGGCAAAAAGACTCTTATCATTGCCCTGCTCCGTGAGATGTATGGTGCTGGAGCTG
AGAAGATAAAAGTAGAGAATAAACCCTGGAAAATAGAGGCAGGTACACGCAAACTGGAAG
TAGAACTGACTACAATCTCAAGCAACTATCATGTGGAGTTAAATCCGAGTGACGCTGGTT
TTCAAGATAGATATGTTGTGCAAGAGATTATCAAGGAGATGGCCAAGAGCAGGCCACTTG
ATGTTGCTGGCAACAAGAGCTTCAAAGTACTCGTTTTGAATGAAGTTGATAGACTCTCGA
AAGAGGCGCAACATTCTCTTCGCCGTACTATGGAAAAGTACAGTTCAGCTTGTAGGCTAA
TTTTGTGCTGCAACAGTGCCTCGAAGGTCATTGAAGCAGTTCGTTCGCGTTGCTTGAACA
TTCGAATAAGTGCACCATCTAAAGAGGAGATTGTGAAAGTGCTTCAACATGTTGCCAAGA
AAGAAGGCTTGCAGCTCCCTTTAGGGTTTGCTGCTCGAATAGCACTC
■■Homology search results ■■ -
sp_hit_id Q2TBV1
Definition sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus
Align length 214
Score (bit) 246.0
E-value 7.0e-65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950271|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_D11, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos tauru...   246   7e-65
sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus muscu...   245   2e-64
sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapi...   244   2e-64
sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=...   237   4e-62
sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospor...   209   1e-53
sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosac...   194   3e-49
sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharom...   170   7e-42
sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subuni...   143   9e-34
sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncul...   129   2e-29
sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Metha...   128   2e-29
sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archa...   127   4e-29
sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Metha...   126   1e-28
sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Metha...   125   1e-28
sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Metha...   125   2e-28
sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Metha...   124   4e-28
sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Metha...   122   1e-27
sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Metha...   122   2e-27
sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Py...   122   2e-27
sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Py...   120   6e-27
sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picro...   120   8e-27
sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Metha...   120   8e-27
sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Py...   120   8e-27
sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aerop...   119   1e-26
sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfo...   118   2e-26
sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Py...   118   2e-26
sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Py...   118   2e-26
sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Metha...   118   3e-26
sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staph...   117   7e-26
sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoa...   117   7e-26
sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natro...   115   2e-25

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus
           GN=RFC3 PE=2 SV=1
          Length = 356

 Score =  246 bits (628), Expect = 7e-65
 Identities = 122/214 (57%), Positives = 162/214 (75%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP +L ++  H E+A QL+ LV  GD PHLL YGPSGAGKKT I+ +LRE+YG G E
Sbjct: 6   DKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVE 65

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+++E++     +   K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+ L+
Sbjct: 66  KLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
            +  K FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRCL +
Sbjct: 123 TSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R+ APS E+I  VL  V KKEGL LP   A R+A
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLA 216


>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus
           GN=Rfc3 PE=2 SV=1
          Length = 356

 Score =  245 bits (625), Expect = 2e-64
 Identities = 120/214 (56%), Positives = 162/214 (75%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP +L ++  H E+A QL+ LV  GD PHLL YGPSGAGKKT I+ +LRE+YG G E
Sbjct: 6   DKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVE 65

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+++E++     +   K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+ L+
Sbjct: 66  KLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
            +  + FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRCL +
Sbjct: 123 TSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R+ APS E+I  VL  V +KEGL LP   A R+A
Sbjct: 183 RVPAPSIEDICSVLSTVCRKEGLALPSTLARRLA 216


>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens
           GN=RFC3 PE=1 SV=2
          Length = 356

 Score =  244 bits (624), Expect = 2e-64
 Identities = 121/214 (56%), Positives = 161/214 (75%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP +L ++  H E+A QL+ LV  GD PHLL YGPSGAGKKT I+ +LRE+YG G E
Sbjct: 6   DKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVE 65

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+++E++     +   K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+ L+
Sbjct: 66  KLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLE 122

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
               + FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRCL +
Sbjct: 123 TNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAV 182

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R+ APS E+I  VL  V KKEGL LP   A R+A
Sbjct: 183 RVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLA 216


>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3
           OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1
          Length = 347

 Score =  237 bits (604), Expect = 4e-62
 Identities = 114/214 (53%), Positives = 161/214 (75%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKY+P +LDK+  H + +  LK ++  GD PHLL YGPSGAGKKT I+A+L+E+YG  A 
Sbjct: 5   DKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPNAL 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K++++ +K    ++ +++  TTISS+YH+E+NP +AG  DR V+Q IIKE+A+S P+D
Sbjct: 65  KLKIDHRTFKHPTSSKNIQI--TTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPID 122

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
                +FK+++LNEVD+LSK+AQH+LRRTMEKY++ CRLILCC+S +KVI+ ++SRCL I
Sbjct: 123 SGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGI 182

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R+ APS+EEI KVL  VA  E   LP   A  +A
Sbjct: 183 RVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVA 216


>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora
           crassa GN=B14D6.460 PE=3 SV=1
          Length = 352

 Score =  209 bits (531), Expect = 1e-53
 Identities = 105/214 (49%), Positives = 152/214 (71%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DK+RP +LD +  H E +++L+ L   GD PHLL YGPSGAGKKT I+A L+E+YG G E
Sbjct: 6   DKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGVE 65

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           KIK++ + ++  +  RKLE  +  ++S YH+E+ PSD G  DR VVQ+++KE+A+++ +D
Sbjct: 66  KIKIDARVFQTSSN-RKLEFNI--VASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVD 122

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
           ++  + FKV+V+NE D L+++AQ +LRRTMEKYS   RLIL  NS + +I  +RSRCL +
Sbjct: 123 LSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLV 182

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++AP+ +EI  VL   AKKEG  +  G   RIA
Sbjct: 183 RVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIA 216


>sp|O94697|RFC5_SCHPO Replication factor C subunit 5
           OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1
          Length = 358

 Score =  194 bits (494), Expect = 3e-49
 Identities = 95/214 (44%), Positives = 150/214 (70%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           D+YRP  L  +  H + +++L  L +  + PHLL YGPSGAGKKT ++A+LRE+YG G+E
Sbjct: 5   DQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSE 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K++ + + +   ++KL++ +  +SS +H+E+ PSD G  DR ++QE++K++A+S  +D
Sbjct: 65  KLKIDQRTF-LTPSSKKLQINI--VSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
           +   K FKV+V+N  D L+++AQ +LRRTMEKYS+  RLIL  NS SK+IE +RSR L +
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++AP+ EEI+ V+  +   +GL+ P      IA
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIA 215


>sp|P38251|RFC5_YEAST Replication factor C subunit 5
           OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1
          Length = 354

 Score =  170 bits (430), Expect = 7e-42
 Identities = 94/211 (44%), Positives = 134/211 (63%), Gaps = 6/211 (2%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQG-DCPHLLFYGPSGAGKKTLIIALLREMYGAGA 179
           DKYRP +L+ +  + E    LK L  Q  D PHLL YGP+G GKKT  +ALL  ++G G 
Sbjct: 6   DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 65

Query: 180 EKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPL 359
            ++K++ + + + A  RKLE  L  +SS YH+E+ PSD G  DR V+QE++KE+A+   +
Sbjct: 66  YRLKIDVRQF-VTASNRKLE--LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV 122

Query: 360 DVAGNKS-----FKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVR 524
           D   +K      +K +++NE + L+K+AQ +LRRTMEKYS   RLI+ C+S S +I  ++
Sbjct: 123 DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182

Query: 525 SRCLNIRISAPSKEEIVKVLQHVAKKEGLQL 617
           SRCL IR  APS  EI  +L  V   E +QL
Sbjct: 183 SRCLLIRCPAPSDSEISTILSDVVTNERIQL 213


>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit
           L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478
           PE=3 SV=1
          Length = 370

 Score =  143 bits (360), Expect = 9e-34
 Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           +KYRP      + + +  +QLK L +  D PH++  GPSG+GKKTL+  LL  +Y     
Sbjct: 5   EKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDEDVN 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
            ++   + + I   + K E+E+  + SNYH+ + P+     D+Y++QEIIK+ A  +  D
Sbjct: 65  ILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMHKSFD 119

Query: 363 VAGNK-SFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLN 539
           +   K  FK +V++ ++ L+  +Q +LRRTME+Y+  CR I+ CN+ SK+++ +RSRC  
Sbjct: 120 IFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRT 179

Query: 540 IRISAPSKEEIVKVLQHVAKKEGLQL 617
             +  P+ E I  V+ ++A  E ++L
Sbjct: 180 FCVPLPTIENINTVVDYIAFMENIKL 205


>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit
           OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3
           SV=1
          Length = 322

 Score =  129 bits (323), Expect = 2e-29
 Identities = 77/205 (37%), Positives = 111/205 (54%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           +KYRP  L+ V+ H +  ++L   V  G+ PHLLF GP G GK    +AL RE+YG    
Sbjct: 9   EKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGE--- 65

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
                                  T  SN+ +ELN SD    D  VV+  IK  A++ PL 
Sbjct: 66  -----------------------TWHSNF-IELNASDERGID--VVRNNIKNFARTAPL- 98

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G   FK++ L+E D L+ +AQ +LRRTME+Y++ CR I+ CN +SK+IE ++SRC   
Sbjct: 99  --GEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVY 156

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQL 617
           R    +  +I   +  +AK EGL++
Sbjct: 157 RFGPLNATDITTGITRIAKNEGLKI 181


>sp|A6US36|RFCS_METVS Replication factor C small subunit
           OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
           1224) GN=rfcS PE=3 SV=1
          Length = 315

 Score =  128 bits (322), Expect = 2e-29
 Identities = 76/205 (37%), Positives = 115/205 (56%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           +KYRP  LD+V+ H E  ++LK  V +   PHLLF G  G GK T  + L +++YG    
Sbjct: 7   EKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG---- 62

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
                   WK                 N+ +ELN SD    D  V++  +K+ A+++P+ 
Sbjct: 63  ------NTWK----------------ENF-LELNSSDERGID--VIRTKVKDFARTKPI- 96

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G+  FKV+ L+E D L+ +AQ++LRRTMEKYS  CR +L CN  SK+I  ++SRC   
Sbjct: 97  --GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIF 154

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQL 617
           R S    E++VK L+ +++KE + +
Sbjct: 155 RFSPLKTEDLVKNLKEISEKESINV 179
tr_hit_id A9SKH1
Definition tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 214
Score (bit) 360.0
E-value 5.0e-98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950271|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_D11, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella paten...   360   5e-98
tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidop...   338   2e-91
tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Or...   334   3e-90
tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subs...   332   9e-90
tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza...   332   9e-90
tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza...   332   9e-90
tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea may...   329   1e-88
tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medic...   327   3e-88
tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea m...   327   3e-88
tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome...   320   5e-86
tr|A8J3U8|A8J3U8_CHLRE DNA replication factor C complex subunit ...   300   7e-80
tr|Q01A06|Q01A06_OSTTA Putative replication factor (ISS) OS=Ostr...   268   3e-70
tr|A4RWV3|A4RWV3_OSTLU Predicted protein OS=Ostreococcus lucimar...   267   5e-70
tr|B6N1Z4|B6N1Z4_BRAFL Putative uncharacterized protein OS=Branc...   256   8e-67
tr|B6KYC6|B6KYC6_BRAFL Putative uncharacterized protein OS=Branc...   254   4e-66
tr|Q5ZJP0|Q5ZJP0_CHICK Putative uncharacterized protein OS=Gallu...   249   1e-64
tr|Q4QQP4|Q4QQP4_XENLA MGC115007 protein OS=Xenopus laevis GN=rf...   248   2e-64
tr|B3RWK4|B3RWK4_TRIAD Putative uncharacterized protein OS=Trich...   247   4e-64
tr|Q5M830|Q5M830_RAT Replication factor C (Activator 1) 3 OS=Rat...   247   5e-64
tr|Q8AW06|Q8AW06_DANRE Replication factor C (Activator 1) 3 OS=D...   246   1e-63
tr|A7MCR5|A7MCR5_DANRE Replication factor C (Activator 1) 3 OS=D...   246   1e-63
tr|Q8BY26|Q8BY26_MOUSE Putative uncharacterized protein OS=Mus m...   245   2e-63
tr|Q3TKD1|Q3TKD1_MOUSE Putative uncharacterized protein OS=Mus m...   245   2e-63
tr|A7S695|A7S695_NEMVE Predicted protein OS=Nematostella vectens...   245   2e-63
tr|Q4R5E8|Q4R5E8_MACFA Brain cDNA, clone: QnpA-15666, similar to...   244   2e-63
tr|Q5W0E8|Q5W0E8_HUMAN Replication factor C (Activator 1) 3, 38k...   244   2e-63
tr|Q5U0C2|Q5U0C2_HUMAN Replication factor C (Activator 1) 3, 38k...   244   2e-63
tr|A8MX32|A8MX32_HUMAN Putative uncharacterized protein RFC3 OS=...   244   2e-63
tr|B4DKE6|B4DKE6_HUMAN cDNA FLJ60629, highly similar to Replicat...   244   4e-63
tr|Q53HK8|Q53HK8_HUMAN Replication factor C 3 isoform 1 variant ...   243   6e-63

>tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185915 PE=4 SV=1
          Length = 354

 Score =  360 bits (923), Expect = 5e-98
 Identities = 176/214 (82%), Positives = 197/214 (92%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKVMVH EEA  LK L+AQGDCPHLLFYGPSGAGKKTLI+ALLREM+G+ AE
Sbjct: 5   DKYRPRTLDKVMVHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFGSSAE 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+KVENKPWK+EAGTRK+EVELTT+SSN+HVELNPSDAGFQDRYVVQEIIK+MAK+RPLD
Sbjct: 65  KVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKNRPLD 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
           VAGN+ FKVLVLNEVD+LSKEAQHSLRRTMEKYS+ACRL+LCCNSASKVIEAVRSRC+NI
Sbjct: 125 VAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSRCVNI 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           RI++PS+++IV VL  VAKKE L LP   A RIA
Sbjct: 185 RINSPSRDDIVDVLMFVAKKENLILPPELAGRIA 218


>tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidopsis
           thaliana GN=At5g27740 PE=2 SV=1
          Length = 354

 Score =  338 bits (867), Expect = 2e-91
 Identities = 161/214 (75%), Positives = 196/214 (91%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP +LDKV+VH + AQ+LK+LV++ DCPHLLFYGPSG+GKKTLI+ALL+++YGA AE
Sbjct: 5   DKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGASAE 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+KVEN+ WK++AG+R +++ELTT+SS  HVEL PSDAGFQDRY+VQEIIKEMAK+RP+D
Sbjct: 65  KVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G K +KVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EA++SRCLN+
Sbjct: 125 TKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           RI+APS+EEIVKVL+ VAKKE LQLP GFAARIA
Sbjct: 185 RINAPSQEEIVKVLEFVAKKESLQLPQGFAARIA 218


>tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Oryza
           sativa subsp. japonica GN=OsRFC5 PE=2 SV=1
          Length = 354

 Score =  334 bits (856), Expect = 3e-90
 Identities = 155/214 (72%), Positives = 194/214 (90%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+GAGA+
Sbjct: 5   DKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAGAD 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D
Sbjct: 65  KVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
           V G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+
Sbjct: 125 VKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++APS+++IV+VL+ + KKE LQLP GFAARIA
Sbjct: 185 RVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIA 218


>tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0060J21.20 PE=2 SV=1
          Length = 354

 Score =  332 bits (852), Expect = 9e-90
 Identities = 154/214 (71%), Positives = 193/214 (90%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+GAGA+
Sbjct: 5   DKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAGAD 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D
Sbjct: 65  KVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+
Sbjct: 125 AKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++APS+++IV+VL+ + KKE LQLP GFAARIA
Sbjct: 185 RVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIA 218


>tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012355 PE=4 SV=1
          Length = 418

 Score =  332 bits (852), Expect = 9e-90
 Identities = 154/214 (71%), Positives = 193/214 (90%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+GAGA+
Sbjct: 69  DKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAGAD 128

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D
Sbjct: 129 KVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPID 188

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+
Sbjct: 189 AKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNV 248

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++APS+++IV+VL+ + KKE LQLP GFAARIA
Sbjct: 249 RVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIA 282


>tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13856 PE=4 SV=1
          Length = 354

 Score =  332 bits (852), Expect = 9e-90
 Identities = 154/214 (71%), Positives = 193/214 (90%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+GAGA+
Sbjct: 5   DKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAGAD 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K+ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D
Sbjct: 65  KVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+
Sbjct: 125 AKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++APS+++IV+VL+ + KKE LQLP GFAARIA
Sbjct: 185 RVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIA 218


>tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score =  329 bits (843), Expect = 1e-88
 Identities = 154/214 (71%), Positives = 190/214 (88%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKV VH + AQ L++ V++ DCPHLLFYGPSG+GKKTLI+AL+++M+GAGAE
Sbjct: 5   DKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFGAGAE 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K+ENK WKI+ GTR LE+EL  +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+RP+D
Sbjct: 65  KVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSRCLN+
Sbjct: 125 AKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++APS+++IV+VL+ + KKE L LP GFAARIA
Sbjct: 185 RVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIA 218


>tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 262

 Score =  327 bits (839), Expect = 3e-88
 Identities = 154/214 (71%), Positives = 188/214 (87%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LD  MVH + AQ LK+LV + DCPHLLFYGPSGAGKKTLI+ALLR+M+G GAE
Sbjct: 5   DKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAE 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+KVEN+ WK++AG+R +++ELTT+SS  H+E+ PSDAGFQDRY+VQEIIKEMAK+RP+D
Sbjct: 65  KVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G K FKVLVLN+VD+LS+EAQHSLRRTMEKYS+ CRL+LCCNS+S+V EA+RSRCLN+
Sbjct: 125 TKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           RI+APS+E+IV+VLQ + KKEGLQLP   AARIA
Sbjct: 185 RINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIA 218


>tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score =  327 bits (839), Expect = 3e-88
 Identities = 153/214 (71%), Positives = 189/214 (88%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LDKV VH + AQ L++ V++ DCPHLLFYGPSG+GKKTLI+AL+++M+GAGAE
Sbjct: 5   DKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFGAGAE 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
           K+K+ENK WKI+ GTR  E+EL  +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+RP+D
Sbjct: 65  KVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSRCLN+
Sbjct: 125 AKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNV 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           R++APS+++IV+VL+ + KKE L LP GFAARIA
Sbjct: 185 RVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIA 218


>tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027060001
           PE=4 SV=1
          Length = 354

 Score =  320 bits (820), Expect = 5e-86
 Identities = 153/214 (71%), Positives = 186/214 (86%)
 Frame = +3

Query: 3   DKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAGAE 182
           DKYRP  LD ++VH + AQ LK+LV + DCPHLLFYGP G+GKKTLI+A+LR+++G    
Sbjct: 5   DKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQIFGKFLF 64

Query: 183 KIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLD 362
            + VENK WKI+AGTR +++ELTT+SS +H+ELNP DAGFQDRY+VQEIIKEMAK+RP+D
Sbjct: 65  ILSVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNRPID 124

Query: 363 VAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNI 542
             G K F+VLVLNEVDRLS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLNI
Sbjct: 125 TKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNI 184

Query: 543 RISAPSKEEIVKVLQHVAKKEGLQLPLGFAARIA 644
           RI+AP++E+I KVL+ +AKKEGLQLP GFA RIA
Sbjct: 185 RINAPTEEQITKVLEFIAKKEGLQLPSGFATRIA 218