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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950299
Clone id TST38A01NGRL0008_E16
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_E16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCAGTGGATGAGGAAGCTGCGTATTATGGATCTGGGCCCAGGAGCTATCCCAGAGCGCG
TGTAGAGTATGGTGATCCTACTATCTATTCGGATCCTTTACGGGCTGCATCTTTGGGACA
CGCGTCGTTAGGGCATGTCTTGCCTAGAGGAGGTCATGGCTATTCATCCGTCTTACCAGG
AGCGGCTGATTACAGTGGATATGCTCCTGCTAGTGCTGCAGATCCACGAGGAGCAGCTTA
TCCTCCTGCGTACTACGGAAGTCGTGGAGGATCTGGTGCCTACTACTGAGCTTTATAAGG
TCCTACTTCGCTGTAAATGCCAGATTATGTTAGATTATCAAAATGGGCACCAAAATGCTT
CTGAGGCGACTATGGAGAAAGAGAGAGATGGTGGGTGCTCAGACGAGGCCTGAATTGCAA
TTGCAACCGCCCCAAAGTCATATAAAGCTCTTAAAGTTGTTGTCTTGTCTCCACATGCAT
TACATTTGTTCTTCTGGCAGTCACAGATGGCTTGCTCCAGCAAGAAAAGGGAAGTGTTGG
AAAGAGACTTGGTTTCCGCCTACACTCTGGAGTTTCCCCATGGTTACTAAATGTATCTTT
TACAAAAAAATTGTGCGCTTAAGAAGAAGACTTCCAAAG
■■Homology search results ■■ -
sp_hit_id Q6IFW2
Definition sp|Q6IFW2|K1C40_RAT Keratin, type I cytoskeletal 40 OS=Rattus norvegicus
Align length 61
Score (bit) 32.0
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950299|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_E16, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6IFW2|K1C40_RAT Keratin, type I cytoskeletal 40 OS=Rattus no...    32   2.8  
sp|O74991|POF3_SCHPO F-box/TPR repeat protein pof3 OS=Schizosacc...    32   3.7  
sp|Q6IFX3|K1C40_MOUSE Keratin, type I cytoskeletal 40 OS=Mus mus...    31   6.2  
sp|A7YWM2|K1C40_BOVIN Keratin, type I cytoskeletal 40 OS=Bos tau...    31   6.2  
sp|P75822|YBJT_ECOLI Uncharacterized protein ybjT OS=Escherichia...    31   6.2  
sp|Q6A162|K1C40_HUMAN Keratin, type I cytoskeletal 40 OS=Homo sa...    30   8.1  

>sp|Q6IFW2|K1C40_RAT Keratin, type I cytoskeletal 40 OS=Rattus
           norvegicus GN=Krt40 PE=2 SV=1
          Length = 431

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 198 DMLLLVLQIHEEQLILLRTT-----EVVEDLVPTTELYKVLLRCKCQIMLDYQNGHQNAS 362
           D LL + + HEE++ LLR        V  D  PT +L KVL   +CQ      N  ++A 
Sbjct: 218 DDLLCLKKDHEEEVNLLREQLGDRLNVELDTAPTVDLNKVLDEMRCQYERVLANNRRDAE 277

Query: 363 E 365
           E
Sbjct: 278 E 278


>sp|O74991|POF3_SCHPO F-box/TPR repeat protein pof3
           OS=Schizosaccharomyces pombe GN=pof3 PE=1 SV=1
          Length = 577

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -1

Query: 561 RRKPSLFPTLPFSCWSKPSVTARRTNVMHV 472
           +++PSLF  L FSC S  SV +R  NVM V
Sbjct: 171 KKEPSLFCCLDFSCASPRSVNSRDRNVMAV 200


>sp|Q6IFX3|K1C40_MOUSE Keratin, type I cytoskeletal 40 OS=Mus
           musculus GN=Krt40 PE=2 SV=1
          Length = 439

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 198 DMLLLVLQIHEEQLILLRTT-----EVVEDLVPTTELYKVLLRCKCQIMLDYQNGHQNAS 362
           D L+ + + HEE++ LLR        V  D  PT +L KVL   +CQ      N  ++A 
Sbjct: 218 DDLICLKKGHEEEVNLLREQLGDRLSVELDTAPTVDLNKVLDEMRCQYERVLANNRRDAE 277

Query: 363 E 365
           E
Sbjct: 278 E 278


>sp|A7YWM2|K1C40_BOVIN Keratin, type I cytoskeletal 40 OS=Bos taurus
           GN=KRT40 PE=2 SV=1
          Length = 431

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 198 DMLLLVLQIHEEQLILLR-----TTEVVEDLVPTTELYKVLLRCKCQIMLDYQNGHQNAS 362
           D LL + + HEE++ +LR        V  D  PTT+L +VL   +CQ      N  ++  
Sbjct: 218 DDLLCLKKSHEEEVNVLRGQLGDRLSVELDTAPTTDLNRVLDEMRCQYETVLANNRRDVE 277

Query: 363 E 365
           E
Sbjct: 278 E 278


>sp|P75822|YBJT_ECOLI Uncharacterized protein ybjT OS=Escherichia
           coli (strain K12) GN=ybjT PE=4 SV=2
          Length = 476

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 478 HYICSSGSHRWLAPARKGKCWKETWFPPTLWSFPMVT 588
           H++  SG  RWL P      W   WF   + S P  T
Sbjct: 221 HFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTT 257


>sp|Q6A162|K1C40_HUMAN Keratin, type I cytoskeletal 40 OS=Homo
           sapiens GN=KRT40 PE=1 SV=2
          Length = 431

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = +3

Query: 204 LLLVLQIHEEQLILLRTT-----EVVEDLVPTTELYKVL--LRCKCQIMLDYQNGHQNAS 362
           LL + + HEE++ LLR        V  D  PT +L +VL  +RC+C+ +L   N  + A 
Sbjct: 220 LLCLKKNHEEEVNLLREQLGDRLSVELDTAPTLDLNRVLDEMRCQCETVL--ANNRREAE 277

Query: 363 E 365
           E
Sbjct: 278 E 278
tr_hit_id Q08YI8
Definition tr|Q08YI8|Q08YI8_STIAU Putative uncharacterized protein OS=Stigmatella aurantiaca DW4/3-1
Align length 108
Score (bit) 36.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950299|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_E16, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q08YI8|Q08YI8_STIAU Putative uncharacterized protein OS=Stigm...    36   1.7  
tr|Q08VM9|Q08VM9_STIAU Serine/threonine-protein kinase Pkn6 OS=S...    36   1.7  
tr|B6KLQ4|B6KLQ4_TOXGO Alpha-1 type II collagen, putative OS=Tox...    35   3.8  
tr|A9WLA9|A9WLA9_RENSM Transcriptional regulator, ROK family OS=...    35   5.0  
tr|B7LN33|B7LN33_ESCFE Putative uncharacterized protein ybjT OS=...    34   8.7  

>tr|Q08YI8|Q08YI8_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_7647 PE=4
           SV=1
          Length = 213

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +3

Query: 78  LLSIRILYGLHLWDTRR*GMSCLEEVMAIHPSYQERLITVDMLLLVLQI--HEEQLILLR 251
           L+ + +  GLHL++T       LEE  A+ P+ +E+++   M  LV  +  H E  IL  
Sbjct: 51  LVLLELATGLHLYNTFTIRPGDLEE--ALTPAVKEQVLGAAMTALVADLPEHAEDCILRA 108

Query: 252 TTEVVEDLVPTTELYKVLLRCKCQIMLDYQNGHQNASEATMEKERDGG 395
            T   +D+   TE   + LR   + +L  +   ++ S A +E E   G
Sbjct: 109 ATFSPQDVAELTEPLPLPLRSILRRVLQRRPEDRHLSAAALEAELRAG 156


>tr|Q08VM9|Q08VM9_STIAU Serine/threonine-protein kinase Pkn6
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_1097 PE=4
           SV=1
          Length = 398

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +3

Query: 78  LLSIRILYGLHLWDTRR*GMSCLEEVMAIHPSYQERLITVDMLLLVLQI--HEEQLILLR 251
           L+ + +  GLHL++T       LEE  A+ P+ +E+++   M  LV  +  H E  IL  
Sbjct: 236 LVLLELATGLHLYNTFTIRPGDLEE--ALTPAVKEQVLGAAMTALVADLPEHAEDCILRA 293

Query: 252 TTEVVEDLVPTTELYKVLLRCKCQIMLDYQNGHQNASEATMEKERDGG 395
            T   +D+   TE   + LR   + +L  +   ++ S A +E E   G
Sbjct: 294 ATFSPQDVAELTEPLPLPLRSILRRVLQRRPEDRHLSAAALEAELRAG 341


>tr|B6KLQ4|B6KLQ4_TOXGO Alpha-1 type II collagen, putative
           OS=Toxoplasma gondii ME49 GN=TGME49_065250 PE=4 SV=1
          Length = 1564

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 44  SYPRARVEYGDPTIYSDPLRAASLGH---ASLGHVLPRGGHGYSSV 172
           S P    E G P + S   R+ SLGH   A   H+LPRGG G+  V
Sbjct: 350 SPPLLSGEGGSPYLLSRATRSGSLGHLHSAGSPHLLPRGGRGFGGV 395


>tr|A9WLA9|A9WLA9_RENSM Transcriptional regulator, ROK family
           OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM
           20767 / IFO 15589) GN=RSal33209_0149 PE=4 SV=1
          Length = 306

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 68  YGDPTIYSDPLRAASLGHASLGHVLPRGGHGYSSVLPGAADYSG 199
           YG+P  Y+D LR A+ GH  LG ++ + G     +    A+ +G
Sbjct: 191 YGEPLDYADVLRRAADGHRQLGQLITQAGRALGILAAAVANLTG 234


>tr|B7LN33|B7LN33_ESCFE Putative uncharacterized protein ybjT
           OS=Escherichia fergusonii GN=ybjT PE=4 SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 478 HYICSSGSHRWLAPARKGKCWKETWFPPTLWSFPMVT 588
           H++  SG HRWL P      W   WF   + S P  T
Sbjct: 221 HFMAVSGKHRWLIPIPFPTRWISVWFLNVITSVPSTT 257