DK950311 |
Clone id |
TST38A01NGRL0008_F04 |
Library |
TST38 |
Length |
550 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_F04. 5' end sequence. |
Accession |
DK950311 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL535Contig1 |
Sequence |
ATTAAAATTCTTCATCCTCTTCTACCGGTTAGGGTTGTATCGCTCTGCATTGCGATGGCA CCTCCAGCGCCAAAGAGTGGCCTTTCGACGGGACTAAACAAGGGGCACATCGTTACCAGG CGCGAGCTTCCTGCTCGTCCTTCCTCAAGAAAGGGTAAACTTGGAACCAGAACCTCCTTT GTGAGGAAGCTGATCCGAGAAGTTGTAGGGTTTGCACCTTACGAGAAGCGTATTACTGAG CTTTTGAAGGTGGGAAAGGACAAGAGAGCTCTTAAGGTGGCAAAGAGGAGGCTTGGAACT CACCTAAGGGCGAAGAAAAAGCGTGAGGAAATGTCTGCTGCTCTCCGGAAGCAGAGATCT ACTGGTGGTACCGAGAAAAAGAAGTGATTTTCATACGTGTGGAAAATATTCTCCATGGTG GACTGCAATTCCCTTATCAGAGATCACCGCCACAGAGATACCTAGGTGTGATTCCCATTT TTGTACCTGTAGTCAGAAAACTGCAGTTGATATTCATCAATTTTGAAAAAAAAAAAAAAA AAAAACCCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O80929 |
Definition |
sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana |
Align length |
112 |
Score (bit) |
161.0 |
E-value |
2.0e-39 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8L5X0 |
Definition |
tr|Q8L5X0|Q8L5X0_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa subsp. japonica |
Align length |
110 |
Score (bit) |
173.0 |
E-value |
4.0e-42 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950311|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_F04, 5' (525 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8L5X0|Q8L5X0_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa... 173 4e-42 tr|B5M1W9|B5M1W9_RHEAU Ribosomal protein L36 OS=Rheum australe P... 172 9e-42 tr|A2WWV9|A2WWV9_ORYSI 60S ribosomal protein L36 OS=Oryza sativa... 172 9e-42 tr|Q6L510|Q6L510_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa... 168 1e-40 tr|A9NL37|A9NL37_PICSI 60S ribosomal protein L36 OS=Picea sitche... 168 1e-40 tr|A2Y5F8|A2Y5F8_ORYSI 60S ribosomal protein L36 OS=Oryza sativa... 168 1e-40 tr|A9NKW3|A9NKW3_PICSI 60S ribosomal protein L36 OS=Picea sitche... 166 7e-40 tr|Q5Q0X7|Q5Q0X7_SACOF 60S ribosomal protein L36 OS=Saccharum of... 166 9e-40 tr|Q5I7L5|Q5I7L5_WHEAT 60S ribosomal protein L36 OS=Triticum aes... 166 9e-40 tr|A9PCN6|A9PCN6_POPTR 60S ribosomal protein L36 OS=Populus tric... 166 9e-40 tr|A5ATP3|A5ATP3_VITVI 60S ribosomal protein L36 OS=Vitis vinife... 165 1e-39 tr|B6SGX0|B6SGX0_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P... 165 1e-39 tr|A6MZE1|A6MZE1_ORYSI 60S ribosomal protein L36 (Fragment) OS=O... 165 1e-39 tr|A9P9I5|A9P9I5_POPTR 60S ribosomal protein L36 OS=Populus tric... 164 3e-39 tr|B4FW07|B4FW07_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P... 163 4e-39 tr|A9PD00|A9PD00_POPTR 60S ribosomal protein L36 OS=Populus tric... 162 1e-38 tr|A2ZZF6|A2ZZF6_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa... 162 1e-38 tr|B6TAT4|B6TAT4_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P... 161 2e-38 tr|A9SJ72|A9SJ72_PHYPA 60S ribosomal protein L36 OS=Physcomitrel... 157 2e-37 tr|A9RXF5|A9RXF5_PHYPA 60S ribosomal protein L36 OS=Physcomitrel... 157 2e-37 tr|B6TRR4|B6TRR4_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P... 147 2e-34 tr|A8JHU2|A8JHU2_CHLRE 60S ribosomal protein L36 OS=Chlamydomona... 134 2e-30 tr|A4RSQ8|A4RSQ8_OSTLU 60S ribosomal protein L36 OS=Ostreococcus... 129 9e-29 tr|Q01EZ8|Q01EZ8_OSTTA 60S ribosomal protein L36 OS=Ostreococcus... 122 1e-26 tr|A7SNU0|A7SNU0_NEMVE 60S ribosomal protein L36 OS=Nematostella... 119 9e-26 tr|A9UZG6|A9UZG6_MONBE 60S ribosomal protein L36 OS=Monosiga bre... 113 7e-24 tr|B3RS96|B3RS96_TRIAD Putative uncharacterized protein OS=Trich... 112 1e-23 tr|B2YI51|B2YI51_9BILA Putative 60S ribosomal protein RPL36 OS=P... 111 3e-23 tr|Q6ZWZ4|Q6ZWZ4_MOUSE 60S ribosomal protein L36 OS=Mus musculus... 110 3e-23 tr|B6M166|B6M166_BRAFL Putative uncharacterized protein OS=Branc... 110 3e-23
>tr|Q8L5X0|Q8L5X0_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa subsp. japonica GN=P0408C03.28 PE=3 SV=1 Length = 110
Score = 173 bits (439), Expect = 4e-42 Identities = 86/110 (78%), Positives = 94/110 (85%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAPP PKSGL G+NKGH+VT+RELP RPS RKGK R +FVR LIREVVGFAPYEKRI Sbjct: 1 MAPPQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEM+ +RK RS G T+KKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMRSAGTTDKKK 110
>tr|B5M1W9|B5M1W9_RHEAU Ribosomal protein L36 OS=Rheum australe PE=4 SV=1 Length = 110
Score = 172 bits (436), Expect = 9e-42 Identities = 87/110 (79%), Positives = 91/110 (82%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP P SGL GLNKGHIVT++ELPA+PS RKGK R FVR LIREV GFAPYEKRI Sbjct: 1 MAPKQPSSGLFVGLNKGHIVTKKELPAKPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEMS LRK RS GG EKKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGAEKKK 110
>tr|A2WWV9|A2WWV9_ORYSI 60S ribosomal protein L36 OS=Oryza sativa subsp. indica GN=OsI_04390 PE=3 SV=1 Length = 110
Score = 172 bits (436), Expect = 9e-42 Identities = 86/110 (78%), Positives = 93/110 (84%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAPP PKSGL G+NKGH+VT+RELP RPS RKGK R +FVR LIREVVGFAPYEKRI Sbjct: 1 MAPPQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEM +RK RS G T+KKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMVGVIRKMRSAGTTDKKK 110
>tr|Q6L510|Q6L510_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa subsp. japonica GN=OJ1281_H05.4 PE=3 SV=1 Length = 113
Score = 168 bits (426), Expect = 1e-40 Identities = 87/113 (76%), Positives = 93/113 (82%), Gaps = 3/113 (2%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP PKSGL G+NKGH+VT+RELP RPS RKGK R +FVR LIREV GFAPYEKRI Sbjct: 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGG---TEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEM+ LRK RS GG TEKKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMRSGGGHAHTEKKK 113
>tr|A9NL37|A9NL37_PICSI 60S ribosomal protein L36 OS=Picea sitchensis PE=3 SV=1 Length = 110
Score = 168 bits (426), Expect = 1e-40 Identities = 85/110 (77%), Positives = 92/110 (83%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP PKSG+ GLN+GHIVT+REL RPS+ KGK RT FVRKLIREV GFAPYEKRI Sbjct: 1 MAPAQPKSGIFVGLNRGHIVTKRELAPRPSANKGKRSKRTDFVRKLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKKK 384 TELLKVGKDKRALKVAK++LGTH RAKKKREEMS LRK R+ G TEKKK Sbjct: 61 TELLKVGKDKRALKVAKKKLGTHKRAKKKREEMSNVLRKMRAAGTTEKKK 110
>tr|A2Y5F8|A2Y5F8_ORYSI 60S ribosomal protein L36 OS=Oryza sativa subsp. indica GN=OsI_20226 PE=3 SV=1 Length = 113
Score = 168 bits (426), Expect = 1e-40 Identities = 87/113 (76%), Positives = 93/113 (82%), Gaps = 3/113 (2%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP PKSGL G+NKGH+VT+RELP RPS RKGK R +FVR LIREV GFAPYEKRI Sbjct: 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGG---TEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEM+ LRK RS GG TEKKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMRSGGGHAHTEKKK 113
>tr|A9NKW3|A9NKW3_PICSI 60S ribosomal protein L36 OS=Picea sitchensis PE=3 SV=1 Length = 110
Score = 166 bits (420), Expect = 7e-40 Identities = 83/110 (75%), Positives = 91/110 (82%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP PKSG+ GLN+GH+VT R+L RPS+ KGK RT FVRKLIREV GFAPYEKRI Sbjct: 1 MAPAQPKSGIFVGLNRGHVVTNRDLAPRPSANKGKRSKRTDFVRKLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKKK 384 TELLKVGKDKRALKVAK++LGTH RAKKKREEMS LRK R+ G TEKKK Sbjct: 61 TELLKVGKDKRALKVAKKKLGTHKRAKKKREEMSNVLRKMRAAGTTEKKK 110
>tr|Q5Q0X7|Q5Q0X7_SACOF 60S ribosomal protein L36 OS=Saccharum officinarum PE=3 SV=1 Length = 111
Score = 166 bits (419), Expect = 9e-40 Identities = 85/111 (76%), Positives = 92/111 (82%), Gaps = 1/111 (0%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAPP PKSGL G+NKGH+VT+RELP RPS RKGK R S VR LIREV GFAPYEKRI Sbjct: 1 MAPPQPKSGLFVGINKGHVVTKRELPPRPSHRKGKATKRVSMVRGLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTG-GTEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEM+ L+K RS G T+KKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLKKMRSAGTHTDKKK 111
>tr|Q5I7L5|Q5I7L5_WHEAT 60S ribosomal protein L36 OS=Triticum aestivum PE=3 SV=1 Length = 112
Score = 166 bits (419), Expect = 9e-40 Identities = 86/112 (76%), Positives = 92/112 (82%), Gaps = 2/112 (1%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP PKSGL G+NKGH+VT+RELP RPS RKGK R FVR LIREV GFAPYEKRI Sbjct: 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGG--TEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEMS+ LRK RS GG +KKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGGGAGDKKK 112
>tr|A9PCN6|A9PCN6_POPTR 60S ribosomal protein L36 OS=Populus trichocarpa PE=3 SV=1 Length = 110
Score = 166 bits (419), Expect = 9e-40 Identities = 84/110 (76%), Positives = 89/110 (80%) Frame = +1
Query: 55 MAPPAPKSGLSTGLNKGHIVTRRELPARPSSRKGKLGTRTSFVRKLIREVVGFAPYEKRI 234 MAP P +GL GLNKGHIVT++EL RPS RKGK R FVR LIREV GFAPYEKRI Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
Query: 235 TELLKVGKDKRALKVAKRRLGTHLRAKKKREEMSAALRKQRSTGGTEKKK 384 TELLKVGKDKRALKVAKR+LGTH RAKKKREEMS LRK R+ GG EKKK Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110
|