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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950317
Clone id TST38A01NGRL0008_F10
Library
Length 651
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_F10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CACTTCTCGACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAG
TAAATGTGAGAATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATA
AAGGCAAGTAGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCAACATGTA
AAAATATATCTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCTGGT
TTATTAATAGAAATAAATCGATTCTTTCCGGATGCTTTATTATTTCCATTTCCCTAACTT
ATTGTTATTAACTAAACCAAAGGAGCCGTGTAGGAACCATACGAAGTGAGAACTCTATGG
TTCGTCATACACGTAATAATGACTCAATTTAGTGATGGGAGTGTTTAATCTATTTACTTC
ATAGGTCGAAACTTCGTAAGTAGTTCGTTTCTATTGCTATGGATCTACATGCGACCCTCA
CCCCCTCTTTTTGGGGAAACTAATTAAATTAGAGTACATCTGATTCCATGGCCAATACTA
AAGATGCAAGGGTAACTATTGCTTTGGAATGTACAAGTTGTATTCAGAGAAAAACCAGTG
GAAAATCCGCGGGTCTTTGCCGATACACTACACGTAAAAATCGTCGTAACA
■■Homology search results ■■ -
sp_hit_id Q85FK1
Definition sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS=Adiantum capillus-veneris
Align length 41
Score (bit) 86.7
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950317|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_F10, 5'
         (651 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS...    87   1e-16
sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    65   4e-10
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    57   1e-07
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    57   1e-07
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    56   1e-07
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    56   2e-07
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    56   2e-07
sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX OS...    56   2e-07
sp|Q859W0|PSAJ_ANTFO Photosystem I reaction center subunit IX OS...    56   2e-07
sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX OS...    56   2e-07
sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX OS...    55   2e-07
sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic OS...    55   4e-07
sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic OS...    55   4e-07
sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic OS...    54   5e-07
sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX OS...    54   5e-07
sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX OS...    54   5e-07
sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic OS...    54   7e-07
sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic OS...    54   7e-07
sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic OS...    54   9e-07
sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic OS...    53   1e-06
sp|Q3BAM0|PSAJ_PHAAO Photosystem I reaction center subunit IX OS...    53   1e-06
sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX OS...    53   1e-06
sp|Q7YJV6|PSAJ_CALFG Photosystem I reaction center subunit IX OS...    53   1e-06

>sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl33 PE=2 SV=2
          Length = 66

 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRN 650
           MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRN
Sbjct: 1   MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRN 41


>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQHVKIYLSTAPVVATIWFGLLAGLLIEINR
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 31


>sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX
           OS=Chara vulgaris GN=psaJ PE=3 SV=1
          Length = 41

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+WFGLLAG+LIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGLLAGILIEINR 31


>sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX
           OS=Chaetosphaeridium globosum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ+ K YLSTAPV+ATIWFG LAGLLIEINR
Sbjct: 1   MQYFKTYLSTAPVIATIWFGFLAGLLIEINR 31


>sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX
           OS=Gnetum parvifolium GN=psaJ PE=3 SV=1
          Length = 43

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ +K YLSTAPV+AT WFGLLAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINR 31


>sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX
           OS=Psilotum nudum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX
           OS=Physcomitrella patens GN=psaJ PE=3 SV=1
          Length = 41

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX
           OS=Marchantia polymorpha GN=psaJ PE=3 SV=1
          Length = 42

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|Q859W0|PSAJ_ANTFO Photosystem I reaction center subunit IX
           OS=Anthoceros formosae GN=psaJ PE=2 SV=1
          Length = 42

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31


>sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX
           OS=Angiopteris evecta GN=psaJ PE=3 SV=1
          Length = 44

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINR 31
tr_hit_id B7ZI94
Definition tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvifolium
Align length 31
Score (bit) 56.2
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950317|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_F10, 5'
         (651 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    56   2e-06
tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria david...    54   6e-06
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    54   1e-05
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    54   1e-05
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    53   1e-05
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu...    53   1e-05
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    53   1e-05
tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia m...    52   2e-05
tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis v...    52   3e-05
tr|Q4FG92|Q4FG92_ACOAM 50S ribosomal protein L33 (Fragment) OS=A...    52   4e-05
tr|Q06R44|Q06R44_9LAMI 50S ribosomal protein L33 OS=Forsythia eu...    51   5e-05
tr|Q06QZ1|Q06QZ1_9LAMI 50S ribosomal protein L33 OS=Jasminum aby...    51   5e-05
tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium subter...    51   5e-05
tr|B2D074|B2D074_OLEEU Ribosomal protein L33 OS=Olea europaea GN...    51   5e-05
tr|Q4FFM0|Q4FFM0_ACOAM Photosystem I subunit IX (Fragment) OS=Ac...    51   5e-05
tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment) OS=Y...    51   7e-05
tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX OS=Heliosp...    51   7e-05
tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment) OS=G...    50   9e-05
tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus banca...    50   9e-05
tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinife...    50   9e-05
tr|Q69VC7|Q69VC7_ORYSJ Photosystem I subunit IX_chloroplast OS=O...    50   9e-05
tr|B8Y2Z4|B8Y2Z4_FESAR Photosystem I subunit IX OS=Festuca arund...    50   9e-05
tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium c...    50   9e-05
tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium palm...    50   9e-05
tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium macr...    50   9e-05
tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium caro...    50   9e-05
tr|B0LP34|B0LP34_9CARY 50S ribosomal protein L33 OS=Silene aegyp...    50   1e-04
tr|A9QC76|A9QC76_TRACE 50S ribosomal protein L33 (Fragment) OS=T...    50   1e-04
tr|Q4FFL6|Q4FFL6_TYPLA Photosystem I subunit IX (Fragment) OS=Ty...    50   1e-04
tr|B7UCF5|B7UCF5_9POAL PsaJ OS=Typha domingensis PE=4 SV=1             50   1e-04

>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ +K YLSTAPV+AT WFGLLAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINR 31


>tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria
           davidiana GN=rpl33 PE=4 SV=1
          Length = 68

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 26/41 (63%), Positives = 28/41 (68%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRN 650
           MA + D RVTI LECTSC Q     K  G+ RYTTRKNRRN
Sbjct: 1   MAKSGDVRVTITLECTSCTQDSVYKKFPGISRYTTRKNRRN 41


>tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra
           equisetina GN=psaJ PE=4 SV=1
          Length = 43

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ++K YLSTAPV+AT+WFG LAG LIEINR
Sbjct: 1   MQYIKKYLSTAPVLATLWFGSLAGFLIEINR 31


>tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia
           lepidozioides GN=psaJ PE=4 SV=1
          Length = 42

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ VK YLSTAPV+AT+W G LAGLLIEINR
Sbjct: 1   MQDVKTYLSTAPVLATLWLGFLAGLLIEINR 31


>tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment)
           OS=Ginkgo biloba GN=psaJ PE=4 SV=1
          Length = 44

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           M+ +KIYLS APV+AT+WFG LAGLLIEINR
Sbjct: 1   MRDIKIYLSVAPVLATLWFGSLAGLLIEINR 31


>tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yucca
           schidigera GN=psaJ PE=4 SV=1
          Length = 44

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ +K YLSTAPV+ T+WFG LAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLTTLWFGSLAGLLIEINR 31


>tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cycas
           micronesica GN=psaJ PE=4 SV=1
          Length = 44

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           M+ +K YLSTAPV+AT+WFG LAGLLIEINR
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINR 31


>tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia
           mirabilis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ +K YLSTAPV+AT+WF  LAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATLWFSSLAGLLIEINR 31


>tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis
           vinifera GN=psaJ PE=4 SV=1
          Length = 43

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           M+ +K YLSTAPV++TIWFG LAGLLIEINR
Sbjct: 1   MRDLKTYLSTAPVLSTIWFGSLAGLLIEINR 31


>tr|Q4FG92|Q4FG92_ACOAM 50S ribosomal protein L33 (Fragment)
           OS=Acorus americanus GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/41 (53%), Positives = 30/41 (73%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRN 650
           MA  KDAR+T+ LECTSC++   + +S G+ RY T+KNR N
Sbjct: 1   MAKGKDARLTVILECTSCVRNGVNKESPGISRYITQKNRHN 41