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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950332
Clone id TST38A01NGRL0008_G01
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_G01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
ATGCTTAGTTTTGAACCTCATGGATCCTTTTTGATGTTGTTCCGAGAAACGAAATTTGCA
CCTAACTGTCAGTAGGCTCCCAGCCGAAGCAGACAATTTTGCAAAGACATCTCTCAGCTA
TTGTTTGTGGAAGTACAATCATGACATATTTATTGACAGGATATTATACTACTTACTAAC
ATCCGATGTTGAGAAATCAAAGTTCAAACATGATGTGGGCCGCTTTGCAAAGAATGAATG
AGGATTTGGAAGAATGCCATCAGGAGGTGCAGGCTGGCCATTCCTCATCCCACAAACGAT
GGAGCTACCATCCAAGCTTTCATTAAATGCTTCTTAGCCTCCCCCATTGGCCTCCGCCTT
TCAGCCCAATTTTGGTCAGTGATGTGACAGCCACAATTAGAGAGTTTAGCCGTCAAGATT
GGGATTCTCTTCCAAGTTTGCCTTGACAGATATCAAAGTCACAGGTCGGACAGATGCTTA
AAGAAAAAAAAGAGTACAAGAACTTTGAAACACACGCACACACCCTATGTACAACGGCCT
CACAGGTAGGGAGACAAACATCCCATCACACGCACACACTTGCATATGGGAACAATCCCT
AAGGACATTAAACATGTCTTCAGGTCGCCCAGGGGGG
■■Homology search results ■■ -
sp_hit_id P39052
Definition sp|P39052|DYN2_RAT Dynamin-2 OS=Rattus norvegicus
Align length 107
Score (bit) 31.2
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950332|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_G01, 5'
         (637 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39052|DYN2_RAT Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1    31   4.7  
sp|P39054|DYN2_MOUSE Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2       31   6.1  
sp|P50570|DYN2_HUMAN Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2       31   6.1  

>sp|P39052|DYN2_RAT Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1
          Length = 870

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +3

Query: 225 LQRMNEDLEECHQEVQAGHSSSHKRWSYHPSFH*ML--LSLPHWPPPFSPILVSDVTATI 398
           + R  +D+E   ++++A  ++  K +  HP++  M   +  PH        L   +T  I
Sbjct: 235 VNRSQKDIEG-RKDIRAALAAERKFFLSHPAYRHMADRMGTPH----LQKTLNQQLTNHI 289

Query: 399 REFSRQDWDSLPSLP*QISKSQVGQMLKEKKEYKNFETHAHTLCTTA 539
           RE       SLP+L  ++ +SQ+  + KE +EYKNF     T  T A
Sbjct: 290 RE-------SLPTLRSKL-QSQLLSLEKEVEEYKNFRPDDPTRKTKA 328


>sp|P39054|DYN2_MOUSE Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2
          Length = 870

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +3

Query: 225 LQRMNEDLEECHQEVQAGHSSSHKRWSYHPSFH*ML--LSLPHWPPPFSPILVSDVTATI 398
           + R  +D+E   ++++A  ++  K +  HP++  M   +  PH        L   +T  I
Sbjct: 235 VNRSQKDIEG-KKDIRAALAAERKFFLSHPAYRHMADRMGTPH----LQKTLNQQLTNHI 289

Query: 399 REFSRQDWDSLPSLP*QISKSQVGQMLKEKKEYKNFETHAHTLCTTA 539
           RE       SLP+L  ++ +SQ+  + KE +EYKNF     T  T A
Sbjct: 290 RE-------SLPTLRSKL-QSQLLSLEKEVEEYKNFRPDDPTRKTKA 328


>sp|P50570|DYN2_HUMAN Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2
          Length = 870

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +3

Query: 225 LQRMNEDLEECHQEVQAGHSSSHKRWSYHPSFH*ML--LSLPHWPPPFSPILVSDVTATI 398
           + R  +D+E   ++++A  ++  K +  HP++  M   +  PH        L   +T  I
Sbjct: 235 VNRSQKDIEG-KKDIRAALAAERKFFLSHPAYRHMADRMGTPH----LQKTLNQQLTNHI 289

Query: 399 REFSRQDWDSLPSLP*QISKSQVGQMLKEKKEYKNFETHAHTLCTTA 539
           RE       SLP+L  ++ +SQ+  + KE +EYKNF     T  T A
Sbjct: 290 RE-------SLPALRSKL-QSQLLSLEKEVEEYKNFRPDDPTRKTKA 328
tr_hit_id A7RR84
Definition tr|A7RR84|A7RR84_NEMVE Predicted protein OS=Nematostella vectensis
Align length 49
Score (bit) 35.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950332|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_G01, 5'
         (637 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7RR84|A7RR84_NEMVE Predicted protein OS=Nematostella vectens...    36   2.3  
tr|A7M0R0|A7M0R0_BACOV Putative uncharacterized protein OS=Bacte...    35   3.8  
tr|Q8AA74|Q8AA74_BACTN Putative uncharacterized protein OS=Bacte...    34   6.5  
tr|Q036J7|Q036J7_LACC3 Alcohol-acetaldehyde dehydrogenase OS=Lac...    34   8.4  
tr|B3W9K2|B3W9K2_LACCB Butanol dehydrogenase OS=Lactobacillus ca...    34   8.4  
tr|A5ZDH2|A5ZDH2_9BACE Putative uncharacterized protein OS=Bacte...    34   8.6  
tr|Q4X6Z5|Q4X6Z5_PLACH Putative uncharacterized protein (Fragmen...    34   8.6  

>tr|A7RR84|A7RR84_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g240106 PE=4 SV=1
          Length = 729

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 41  SEKRNLHLTVSRLPAEADNFAKTSLSYCLWKYNHDIFIDRILYYLLTSD 187
           S K NL+L V  LP   D++     S  + KY HD +ID+  +++ + D
Sbjct: 100 SSKNNLNLPVVSLPGVDDSYPPQRKSMLMLKYMHDNYIDQFEWFMRSDD 148


>tr|A7M0R0|A7M0R0_BACOV Putative uncharacterized protein
           OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_03691 PE=4
           SV=1
          Length = 502

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +2

Query: 47  KRNLHLTVSRLPAEADNFAKTSLSYCLWK--YNHDIFIDRILY---YLLTSDVEKSKFKH 211
           K N    VS   + AD      + Y L K  +N  +F+  + Y   Y+  S+V+++KF  
Sbjct: 349 KANSEELVSSFMSPADLAVSVGMDYKLSKKKFNLSVFMAPLTYNLRYIGNSEVDETKFGL 408

Query: 212 DVGRFAKNE*GFGRMPSGGAGWPFLIPQTME 304
           D G+ +KN+  FG        W  +   T+E
Sbjct: 409 DKGKCSKND--FGSQLQSTLNWTIISAVTLE 437


>tr|Q8AA74|Q8AA74_BACTN Putative uncharacterized protein
           OS=Bacteroides thetaiotaomicron GN=BT_0591 PE=4 SV=1
          Length = 483

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +2

Query: 35  CCSEKRNLHLTVSRLPAEADNFAKTSLSYCL--WKYNHDIFIDRILY---YLLTSDVEKS 199
           C   K N    VS   + AD      + Y L   K+N  +FI  + Y   Y+  S+V+++
Sbjct: 325 CHGYKANSEELVSAFLSPADLAVSIGMDYKLNKQKFNLSVFIGPLTYNLRYIDNSEVDET 384

Query: 200 KFKHDVGRFAKNE*GFGRMPSGGAGWPFLIPQTME 304
           KF  + G+ +KN+  FG        W  +   ++E
Sbjct: 385 KFGLEKGKCSKND--FGSQLQSTFNWKIISAVSLE 417


>tr|Q036J7|Q036J7_LACC3 Alcohol-acetaldehyde dehydrogenase
           OS=Lactobacillus casei (strain ATCC 334) GN=LSEI_2125
           PE=4 SV=1
          Length = 397

 Score = 33.9 bits (76), Expect = 8.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +3

Query: 204 SNMMWAALQRMNEDLEECHQEVQAGHSSSHKRWSYHPSFH*MLLSL--PHWPPPFSPILV 377
           +N+MW+A   +N  +   ++     HS  H+  +Y+   H + L +  P W    S IL 
Sbjct: 243 ANLMWSATMALNGIVSVANENGWTVHSLEHELSAYYDITHGVGLGILTPRW---MSFILT 299

Query: 378 SDVTAT--IREFSRQDWD 425
            D T    + +F R  WD
Sbjct: 300 KDATTAEMLAQFGRHVWD 317


>tr|B3W9K2|B3W9K2_LACCB Butanol dehydrogenase OS=Lactobacillus casei
           (strain BL23) GN=bdh PE=4 SV=1
          Length = 397

 Score = 33.9 bits (76), Expect = 8.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +3

Query: 204 SNMMWAALQRMNEDLEECHQEVQAGHSSSHKRWSYHPSFH*MLLSL--PHWPPPFSPILV 377
           +N+MW+A   +N  +   ++     HS  H+  +Y+   H + L +  P W    S IL 
Sbjct: 243 ANLMWSATMALNGIVSVANENGWTVHSLEHELSAYYDITHGVGLGILTPRW---MSFILT 299

Query: 378 SDVTAT--IREFSRQDWD 425
            D T    + +F R  WD
Sbjct: 300 KDATTAEMLAQFGRHVWD 317


>tr|A5ZDH2|A5ZDH2_9BACE Putative uncharacterized protein
           OS=Bacteroides caccae ATCC 43185 GN=BACCAC_00928 PE=4
           SV=1
          Length = 504

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +2

Query: 35  CCSEKRNLHLTVSRLPAEADNFAKTSLSYCL--WKYNHDIFIDRILY---YLLTSDVEKS 199
           C   K N    VS   + AD      + Y L   K+N  +F+  + Y   Y+  S+V+++
Sbjct: 347 CHGYKANSEDLVSAFMSPADLAVSIGMDYKLNKKKFNLSVFMAPLTYNLRYIGNSEVDET 406

Query: 200 KFKHDVGRFAKNE*GFGRMPSGGAGWPFLIPQTME 304
           KF  + G+ +KN+  FG        W  +   T+E
Sbjct: 407 KFGLEKGKCSKND--FGSQLQSTFNWNIITAVTLE 439


>tr|Q4X6Z5|Q4X6Z5_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC405588.00.0 PE=4 SV=1
          Length = 93

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -1

Query: 577 VCV*WDVCLPTCEAVVHRVCACVSKFLYSFFSLSIC 470
           +C+ + V +PTC ++   +CAC++ ++Y   S+ +C
Sbjct: 9   LCIFFSVSVPTCVSLCECLCACLTLYVYVCLSVCLC 44