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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950334
Clone id TST38A01NGRL0008_G03
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_G03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTAAAAACCGCCGTCTAGTTTTCTGCACTTCCAAGTTTTTCTGTGCTGTGACATGGAGAC
GACGTCCGCTGCTTCGGAGATTGAGCGTCTTGAACGCAAGGTCGACATGTCTCTGGGTAA
TTTCTGCGATTCTCTTCGCCTTTTCCTCTATCTATAGCTAGGGTTTCGAGTGTAAGGGAG
AAACCGGTGGGACTTTTCTTGTCATTCTAAGCTGTTTGTCTGACTAGTTTGTGGAGAGCA
GAAGAAAGTAAATTTATTTTCATGGTAGTTTTCTGCAGAGAGTCTCTTCTTTTACGGCTC
CCTTCAGTCACGTCGTTGCAGATCTGCCCCATGAATGTGGCCTCTAGAACAAGCTTTACT
TCTTTTATCATGTACGAAAAGTGGCAGTGTAGACAAAGAGTGAGAAGTGTAGTGTTCATC
TGTCAAATGGTAGTTCTAGCTATTTGTCGGCAGGGTTCTGAGGGAGATTAGTTTTCTTGT
TTAAGAGGAATAAGCTTTGTTTGTCTGTGATCGCGTCTAAACGTTCTCAATTAGGGGTCT
TGTTGGAACTTTAAATTTTTGCTCATTGCTTTGCAGATGACATCATCAAGATGCAAAAGA
AGATGCAGCGCAAGAGAAAGAGTACCAGAAAACTGAA
■■Homology search results ■■ -
sp_hit_id Q9FKR0
Definition sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana
Align length 43
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950334|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_G03, 5'
         (637 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent me...    33   1.2  
sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent me...    32   3.6  
sp|Q9FKC8|MT799_ARATH Putative S-adenosylmethionine-dependent me...    32   3.6  
sp|P27462|ORF2A_BBMV RNA-directed RNA polymerase 2A OS=Broad bea...    30   8.1  

>sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent
           methyltransferase At5g38780 OS=Arabidopsis thaliana
           GN=At5g38780 PE=2 SV=1
          Length = 361

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -2

Query: 459 RTLPTNS*NYHLTDEHYTSHSLSTLPLFVHDKRSKACSRGHIH 331
           R LP NS   H+ +  +T+H LS +P  V DK S A ++ +IH
Sbjct: 139 RVLPRNS--IHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIH 179


>sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent
           methyltransferase At5g38100 OS=Arabidopsis thaliana
           GN=At5g38100 PE=2 SV=1
          Length = 359

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -2

Query: 459 RTLPTNS*NYHLTDEHYTSHSLSTLPLFVHDKRSKACSRGHI 334
           R LP NS   H+    YT+H LS +P  V DK+S A ++ +I
Sbjct: 137 RVLPRNS--IHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYI 176


>sp|Q9FKC8|MT799_ARATH Putative S-adenosylmethionine-dependent
           methyltransferase At5g37990 OS=Arabidopsis thaliana
           GN=At5g37990 PE=3 SV=2
          Length = 362

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -2

Query: 459 RTLPTNS*NYHLTDEHYTSHSLSTLPLFVHDKRSKACSRGHI 334
           R LP NS   H+    Y  H LST+P  V DK+S A ++ +I
Sbjct: 140 RVLPKNS--LHIGHITYALHWLSTVPQHVCDKKSPALNKSYI 179


>sp|P27462|ORF2A_BBMV RNA-directed RNA polymerase 2A OS=Broad bean
           mottle virus GN=RNA2 PE=3 SV=1
          Length = 810

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 346 RTSFTSFIMYEKWQCRQRVRSVVFICQMVVLAICRQGSEGD*FSCLRGISFVCL*SRLNV 525
           R  F SF    K+  R    S+  +C++  L  C+ G EGD  + L G ++     R N 
Sbjct: 643 RADFDSFCDRMKFLDRLSELSLSVLCRLTALKYCKPGIEGDVRAWLSGFAYY----RENF 698

Query: 526 LN*GSCW 546
           L    C+
Sbjct: 699 LRYSECY 705
tr_hit_id B7Q1Z0
Definition tr|B7Q1Z0|B7Q1Z0_IXOSC Putative uncharacterized protein OS=Ixodes scapularis
Align length 55
Score (bit) 35.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950334|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_G03, 5'
         (637 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7Q1Z0|B7Q1Z0_IXOSC Putative uncharacterized protein OS=Ixode...    35   3.8  

>tr|B7Q1Z0|B7Q1Z0_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW020045 PE=4 SV=1
          Length = 128

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 200 KKSPTGFSLTLE--TLAIDRGKGEENRRNYPETCRPCVQDAQSPKQRTSSPCHST 42
           ++  TGF L L+   LA+   K  E  RN PE C   ++ + +P++ T+ PC ++
Sbjct: 7   RRLSTGFELVLQRRVLAVPPHKLPEASRNAPERCTTTLRWSSTPQRSTAIPCRNS 61