NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950356
Clone id TST38A01NGRL0008_H01
Library
Length 682
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_H01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GGCATCTTCTCCGACATCTTTACAGGCAGTTATCAAGACTCGTAGAGCCAAATTGAGTCT
TTCACCCCCTTAGGAATGCAGAGTTAGGCATGGATCCCTGCATTCTTGAAGAAATTTTGG
ATGAAACAGGGCAGGACCTCAAACACAACAAAGCTCCAGCAGGGCAAGCTGTAAGACAGG
AAAAATCGTCATCCTTTGGATCCATCGTGCGGGGCAAATCGGAGTAAATGCATTTCAAGA
ATGCGCTTAATGGGGGACTAAAAGGGAGCTCATATAGCAGGAAAAATGGAGGAGTGTTGG
GCGCTTAGCTTGTGGATCTCAGGATGTAGCACCTCTTATGAGCCCTGTTGTTGTCTGTGC
CTTGCAGACAAGACAACAGAGACGTTCGCAACTAGTATTTGCATTTGTAAGCTTGCTGCA
CAGCAATGAGGTCCCCCAATGAGGTCCTCAGATGATGGCAGGCTTGCTTCAGCTGCTTCA
TTTCTTCCTCTTGCTCATCATGAGCTCAAAAGCTGTCTGCCAAGATAGTGAGCATGGGGG
ACATTCATTCTCGAATCTGGAAAATGCAAGCTGTTATCCTGGGCCGTGTAGTTCAGTTAA
ACCTGTGTCTATTGAAGAGAATTATTTACAGGGGGGTGCATCGTCGGCAATTTTGCCCAA
CGTGTTAGAATTTATAAGCTTC
■■Homology search results ■■ -
sp_hit_id Q66H54
Definition sp|Q66H54|F16A2_RAT UPF0518 protein FAM160A2 OS=Rattus norvegicus
Align length 64
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950356|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_H01, 5'
         (682 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66H54|F16A2_RAT UPF0518 protein FAM160A2 OS=Rattus norvegicu...    33   1.4  
sp|Q3U2I3|F16A2_MOUSE UPF0518 protein FAM160A2 OS=Mus musculus G...    33   1.4  
sp|Q8N612|F16A2_HUMAN UPF0518 protein FAM160A2 OS=Homo sapiens G...    33   1.4  
sp|Q5R8V2|F16A2_PONAB UPF0518 protein FAM160A2 OS=Pongo abelii G...    32   2.4  
sp|P12383|PDR1_YEAST Transcription factor PDR1 OS=Saccharomyces ...    32   4.1  
sp|Q32RQ2|RR14_ZYGCR 30S ribosomal protein S14, chloroplastic OS...    31   7.0  
sp|Q9C626|FB37_ARATH Putative F-box protein At1g47056 OS=Arabido...    31   7.0  

>sp|Q66H54|F16A2_RAT UPF0518 protein FAM160A2 OS=Rattus norvegicus
           GN=Fam160a2 PE=1 SV=1
          Length = 791

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 364 QGTDNNRAHKRCYILRSTS*APNTPPFFLLYELPFSPPLSAFLKCIYSDLPRTMDPKDDD 185
           +GT   +A     +L + S    T   ++     F P L+  L  +YS LPR ++   DD
Sbjct: 223 EGTLGQQARDALLLLMALSDGSPTVGRYIADHSYFCPVLATGLSALYSSLPRKIEVPGDD 282

Query: 184 FSCL 173
           + CL
Sbjct: 283 WHCL 286


>sp|Q3U2I3|F16A2_MOUSE UPF0518 protein FAM160A2 OS=Mus musculus
           GN=Fam160a2 PE=2 SV=2
          Length = 975

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 364 QGTDNNRAHKRCYILRSTS*APNTPPFFLLYELPFSPPLSAFLKCIYSDLPRTMDPKDDD 185
           +GT   +A     +L + S    T   ++     F P L+  L  +YS LPR ++   DD
Sbjct: 223 EGTLGQQARDALLLLMALSDGSPTVGRYIADHSYFCPVLATGLSALYSSLPRKIEVPGDD 282

Query: 184 FSCL 173
           + CL
Sbjct: 283 WHCL 286


>sp|Q8N612|F16A2_HUMAN UPF0518 protein FAM160A2 OS=Homo sapiens
           GN=FAM160A2 PE=1 SV=2
          Length = 972

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 364 QGTDNNRAHKRCYILRSTS*APNTPPFFLLYELPFSPPLSAFLKCIYSDLPRTMDPKDDD 185
           +GT   +A     +L + S    T   ++     F P L+  L  +YS LPR ++   DD
Sbjct: 223 EGTLGQQARDALLLLMALSAGSPTVGRYIADHSYFCPVLATGLSALYSSLPRKIEVPGDD 282

Query: 184 FSCL 173
           + CL
Sbjct: 283 WHCL 286


>sp|Q5R8V2|F16A2_PONAB UPF0518 protein FAM160A2 OS=Pongo abelii
           GN=FAM160A2 PE=2 SV=1
          Length = 972

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 364 QGTDNNRAHKRCYILRSTS*APNTPPFFLLYELPFSPPLSAFLKCIYSDLPRTMDPKDDD 185
           +GT   +A     +L + S    T   ++     F P L+  L  +YS LPR ++   DD
Sbjct: 223 EGTLGQQARDALPLLMALSAGSPTVGRYIADHSYFCPVLATGLSALYSSLPRRIEVPGDD 282

Query: 184 FSCL 173
           + CL
Sbjct: 283 WHCL 286


>sp|P12383|PDR1_YEAST Transcription factor PDR1 OS=Saccharomyces
           cerevisiae GN=PDR1 PE=1 SV=2
          Length = 1068

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 515 VCQDSEHGGHSFSNLENASCYPGPCSSVKPVSIEENYLQGGASS 646
           V ++++    SFSN +   C  GPC+  +P    EN+  GG SS
Sbjct: 98  VKEETDSSSTSFSNPQR--CTDGPCAVEQPTKFFENFKLGGRSS 139


>sp|Q32RQ2|RR14_ZYGCR 30S ribosomal protein S14, chloroplastic
           OS=Zygnema circumcarinatum GN=rps14 PE=3 SV=1
          Length = 100

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -1

Query: 496 EQEEEMKQLKQACHHLRTSLGDLIAVQQAYKCKY*LRTSLLSCLQGTDNNRAHKRCYI 323
           E+E++  +L Q   +LR SL ++I    + + K+ ++  L    + +   R H+RC++
Sbjct: 8   EREKKRSELTQKYSNLRKSLKEMIHQASSLEEKWSIQRQLQRLPRNSAATRVHRRCFV 65


>sp|Q9C626|FB37_ARATH Putative F-box protein At1g47056
           OS=Arabidopsis thaliana GN=At1g47056 PE=4 SV=1
          Length = 518

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 193 DDDFSCLTA-CPAGALLCLRSCPVS 122
           D + SC+ A CPA   LC+++CP+S
Sbjct: 377 DPELSCIAAKCPALRKLCIKNCPIS 401
tr_hit_id B6KCY7
Definition tr|B6KCY7|B6KCY7_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49
Align length 49
Score (bit) 34.3
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950356|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_H01, 5'
         (682 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KCY7|B6KCY7_TOXGO Putative uncharacterized protein OS=Toxop...    34   7.6  

>tr|B6KCY7|B6KCY7_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_070340 PE=4 SV=1
          Length = 1597

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 503  SSKAVCQDSEHGGHSFSNLENASCYPGPCSSVKPVSIEENYLQGGASSA 649
            SS+ +C++S H   SFS+  ++S    PCSS +  S   +     ASS+
Sbjct: 1002 SSRNLCRNSAHNSSSFSSFVSSSTSSSPCSSSRSSSTSVSSSSSSASSS 1050