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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950357
Clone id TST38A01NGRL0008_H02
Library
Length 658
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_H02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AAATGTGGATTCTGGCAGCGCCGCCTGGAGTGTAAATGCTCGACTTCGCTAGGCGGGTTT
CCCCCCGCTCGTTATAGTGACGAGGCGACTGTACCAGCTTTCTTCTGAAGCTCGAAGGCC
TCTAGATGACCTCCCTCAGAGAGGGCATGCTGCTTACTTCATGAAGGAAATGGGCTGCAG
AGCAGGTCCCGCTTGCACAGAGTCCCGGGTTTTGATGGCTATGAGGGTCGCCCGTGGTGC
TGGCGCTTGCTGCCTTGATGCACGAACAACCACATCCTCCTTGATGCTGCACAAGCTTCC
TCTCTTGCGAGCTCATCCCACCCCTCTTACATGCAGACGGTCATTGGCTTCTGGTCTTTA
TCAAGCATTCCGCCATTGCTTCTCACTCTGCTATCACCCTGCCTACTTAACGCAATGGCA
ACCTTGTCTCAGAGTTGAGGTTGCACGTGTAAATGGAAGCAGAAATTCAAAGTCAAGTGT
TCAAGAGCTTCAATCTTCATCAAAAGAGTGCATAGAATGGTGGGCCAAGAAGGTAGAGCA
AATGAAAAAGCCAGTTGTGAAGGAGTTAATAAAGAGATTGAGCTATTCAAATTTGCTCGG
TCTTGATGAAAATTTGAAGAATGGCAGCTGTAGAGATGGTTCTCTGAACGGGGAGCTG
■■Homology search results ■■ -
sp_hit_id Q9BYK8
Definition sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein OS=Homo sapiens
Align length 65
Score (bit) 32.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950357|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_H02, 5'
         (658 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated recepto...    32   2.9  
sp|Q4ULI7|PPDK_RICFE Pyruvate, phosphate dikinase OS=Rickettsia ...    31   5.1  
sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus mus...    31   5.1  
sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1 ...    30   8.6  
sp|Q92HI8|PPDK_RICCN Pyruvate, phosphate dikinase OS=Rickettsia ...    30   8.6  

>sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor
            A-interacting complex 285 kDa protein OS=Homo sapiens
            GN=PRIC285 PE=1 SV=5
          Length = 2649

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -3

Query: 326  EGWDELAREEACAASRRMWLFVHQGSKRQHHGRPS*PS---KPGTLCKRDLLCSPFPS*S 156
            + WD+  R +   A RR+ LFVH      H G    P    +PGTL   +LL    P   
Sbjct: 2049 QDWDQERRADRQEAPRRVHLFVH------HMGMEKVPEEVLRPGTLFTVELLPKQLPDLR 2102

Query: 155  KQHAL 141
            K+ A+
Sbjct: 2103 KEEAV 2107


>sp|Q4ULI7|PPDK_RICFE Pyruvate, phosphate dikinase OS=Rickettsia
           felis GN=ppdK PE=3 SV=1
          Length = 878

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -1

Query: 310 SQERKLVQHQGGCGCSCIKAASASTTGDPHSHQNPGLCASGTCSAAHFLHEVSSMPSLRE 131
           S+E KL+        S    A+A T  D       G    G C + H   + + +P +RE
Sbjct: 522 SEESKLILDWADEISSLKVRANAETVNDALVSIKFGAQGIGLCRSEHMFFDKNKIPLVRE 581

Query: 130 VI*RPSSFRRKL 95
           +I  P   RRKL
Sbjct: 582 MIIAPDIERRKL 593


>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus
           musculus GN=Nhlrc2 PE=2 SV=1
          Length = 725

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
 Frame = +1

Query: 64  PARYSDEATVPAFF*SSKASR*PPSERACC-------LLHEGNGLQSRSRLHRVPGFDGY 222
           P   SD A V   F   K    P   ++          +H G  LQ R +L   PG    
Sbjct: 569 PVCKSDSAVVDGSFPREKQKTVPKVPKSAAHIGLPPVTVHPGQALQLRLKLQLPPGAKLT 628

Query: 223 EGRPWCWRL 249
           EG P CW L
Sbjct: 629 EGAPSCWFL 637


>sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1
           OS=Homo sapiens GN=UBFD1 PE=1 SV=1
          Length = 533

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 283 QGGCGCSCIKAASASTTG-DPHSHQNPGLCA 194
           QG   CS   A      G +PHSH+NPG+ A
Sbjct: 32  QGASACSVTSARVTCGAGSEPHSHRNPGISA 62


>sp|Q92HI8|PPDK_RICCN Pyruvate, phosphate dikinase OS=Rickettsia
           conorii GN=ppdK PE=3 SV=2
          Length = 878

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -1

Query: 310 SQERKLVQHQGGCGCSCIKAASASTTGDPHSHQNPGLCASGTCSAAHFLHEVSSMPSLRE 131
           S+E KL+        S    A+A T  D       G    G C + H   + + +P +R+
Sbjct: 522 SEESKLILDWADEISSLKVRANAETVNDALVSVKFGAQGIGLCRSEHMFFDKNKIPLVRD 581

Query: 130 VI*RPSSFRRKL 95
           +I  P   RRKL
Sbjct: 582 MIIAPDIERRKL 593
tr_hit_id A9SXU2
Definition tr|A9SXU2|A9SXU2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 70.5
E-value 9.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950357|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_H02, 5'
         (658 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SXU2|A9SXU2_PHYPA Predicted protein OS=Physcomitrella paten...    70   9e-11
tr|B3U2A3|B3U2A3_CUCSA DNA mismatch repair protein OS=Cucumis sa...    64   6e-09
tr|A7NXJ8|A7NXJ8_VITVI Chromosome chr5 scaffold_2, whole genome ...    62   2e-08
tr|Q1XBQ7|Q1XBQ7_MAIZE DNA mismatch repair protein OS=Zea mays G...    62   3e-08
tr|Q0JBW2|Q0JBW2_ORYSJ Os04g0507000 protein OS=Oryza sativa subs...    62   4e-08
tr|Q01IV6|Q01IV6_ORYSA OSIGBa0157A06.3 protein OS=Oryza sativa G...    62   4e-08
tr|Q84LK0|Q84LK0_ARATH DNA mismatch repair protein OS=Arabidopsi...    61   7e-08
tr|Q2TMH4|Q2TMH4_PHAVU DNA mismatch repair protein OS=Phaseolus ...    58   5e-07
tr|Q1WK36|Q1WK36_PHAVU DNA mismatch repair protein OS=Phaseolus ...    58   5e-07
tr|Q1XBQ6|Q1XBQ6_SOLLC DNA mismatch repair protein (Fragment) OS...    57   8e-07
tr|Q1XBQ8|Q1XBQ8_SOYBN DNA mismatch repair protein OS=Glycine ma...    56   2e-06
tr|Q7F952|Q7F952_ORYSA OSJNBb0002J11.13 protein OS=Oryza sativa ...    53   2e-05
tr|A3AVE7|A3AVE7_ORYSJ Putative uncharacterized protein OS=Oryza...    53   2e-05
tr|Q7X8P0|Q7X8P0_ORYSJ OSJNBa0043L24.4 protein OS=Oryza sativa s...    45   0.004
tr|Q9LK12|Q9LK12_ARATH Similarity to mismatch repair protein Mut...    39   0.28 
tr|A4H8J2|A4H8J2_LEIBR Putative uncharacterized protein OS=Leish...    36   2.4  
tr|A9TFV9|A9TFV9_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.1  
tr|B5H552|B5H552_STRPR Predicted protein OS=Streptomyces pristin...    34   7.0  

>tr|A9SXU2|A9SXU2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_231556 PE=4 SV=1
          Length = 720

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 30/49 (61%), Positives = 38/49 (77%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           IEWW  KVE   KPV +EL+K+L YSNLLGLDENL+NG+ + G +N E+
Sbjct: 133 IEWWRLKVENCTKPVTRELMKKLKYSNLLGLDENLRNGNLKTGKMNAEI 181


>tr|B3U2A3|B3U2A3_CUCSA DNA mismatch repair protein OS=Cucumis
           sativus PE=4 SV=1
          Length = 1227

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 29/49 (59%), Positives = 37/49 (75%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW + VE  KKP   +L+KRL +SNLLGLD NLKNGS ++G+LN E+
Sbjct: 140 ILWWKETVESCKKPSSVQLVKRLDFSNLLGLDTNLKNGSLKEGTLNCEI 188


>tr|A7NXJ8|A7NXJ8_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020365001
           PE=3 SV=1
          Length = 1122

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 26/49 (53%), Positives = 37/49 (75%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW ++++  KKP    L+KRL YSNLLG+D NLKNG+ ++G+LN E+
Sbjct: 80  IMWWKERMQMCKKPSTVHLVKRLIYSNLLGVDPNLKNGNLKEGTLNWEM 128


>tr|Q1XBQ7|Q1XBQ7_MAIZE DNA mismatch repair protein OS=Zea mays
           GN=MSH1 PE=2 SV=1
          Length = 1131

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW +K+E+ +KP   +L +RL YSN+LGLD NL+NGS +DG+LN E+
Sbjct: 76  IMWWKEKMERCRKPSSIQLTQRLVYSNILGLDPNLRNGSLKDGTLNMEI 124


>tr|Q0JBW2|Q0JBW2_ORYSJ Os04g0507000 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0507000 PE=3 SV=1
          Length = 1132

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW +K+E+ +KP   +L +RL YSN+LGLD  L+NGS +DGSLN E+
Sbjct: 80  ILWWKEKMERCRKPSSMQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEM 128


>tr|Q01IV6|Q01IV6_ORYSA OSIGBa0157A06.3 protein OS=Oryza sativa
           GN=OSIGBa0157A06.3 PE=3 SV=1
          Length = 1133

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW +K+E+ +KP   +L +RL YSN+LGLD  L+NGS +DGSLN E+
Sbjct: 80  ILWWKEKMERCRKPSSMQLTQRLVYSNILGLDPTLRNGSLKDGSLNTEM 128


>tr|Q84LK0|Q84LK0_ARATH DNA mismatch repair protein OS=Arabidopsis
           thaliana GN=MSH1 PE=2 SV=1
          Length = 1118

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 25/47 (53%), Positives = 37/47 (78%)
 Frame = +2

Query: 518 WWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           WW ++++  KKP   +LI+RL Y+NLLGLD +L+NGS +DG+LN E+
Sbjct: 82  WWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLRNGSLKDGNLNWEM 128


>tr|Q2TMH4|Q2TMH4_PHAVU DNA mismatch repair protein OS=Phaseolus
           vulgaris PE=2 SV=1
          Length = 1126

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW ++++  KK    +LI+RL +SNLLGLD  LKNGS ++G+LN E+
Sbjct: 83  ISWWKERLQMCKKFSTVQLIQRLEFSNLLGLDSKLKNGSVKEGTLNWEM 131


>tr|Q1WK36|Q1WK36_PHAVU DNA mismatch repair protein OS=Phaseolus
           vulgaris GN=Msh1 PE=3 SV=1
          Length = 1126

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW ++++  KK    +LI+RL +SNLLGLD  LKNGS ++G+LN E+
Sbjct: 83  ISWWKERLQMCKKFSTVQLIQRLEFSNLLGLDSKLKNGSVKEGTLNWEM 131


>tr|Q1XBQ6|Q1XBQ6_SOLLC DNA mismatch repair protein (Fragment)
           OS=Solanum lycopersicum GN=MSH1 PE=2 SV=1
          Length = 1124

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 24/49 (48%), Positives = 37/49 (75%)
 Frame = +2

Query: 512 IEWWAKKVEQMKKPVVKELIKRLSYSNLLGLDENLKNGSCRDGSLNGEL 658
           I WW +++E ++KP    L KRL+Y NLLG+D +L+NGS ++G+LN E+
Sbjct: 75  IMWWKERMEFLRKPSSALLAKRLTYCNLLGVDPSLRNGSLKEGTLNSEM 123