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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950363
Clone id TST38A01NGRL0008_H08
Library
Length 645
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_H08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GGTTTCTTAACTGCACTGATCAGAGGTTTAAAGATAGGTTATCAGCTGAGTACATGGATG
AGGATGAACAAGGACCTGTTTTTCGCATGGGTGGCATTGTGCACACAGAATTAAAGCCTG
TTGAGGAAGAAAACTTATCAGAGGAAGTCCTTGATTTAGAGACCAATCGTTGTGAGGAGA
GAGAAAAACCGAGGTCATCCCCCTCTCGGAGAAGAGAAACAACAAAGATGCATCAGCAGC
AGCAGAGGGATGATGAATTCGAGACAGCTTCAGACATGTCTAGTGAAGATGAGGAGGATG
CAGATGATGATACAGATGATGGGAGAGATATTTTGCGGGCTAGGCTGTGGGATGATAAGC
AGCAGAGGGATATCAAACTCGACACAGCTTCAGACATGTATAGTGAAGGTAGTGATGATA
CAGATGATGCAGTAGATGTTTTGCGGGCTAGGCTGCAGGAGGATGATGAGGACTTGGAGT
CTTCATCTGAATTTGATATTAGTGAGGAGGAAGAAGAAAGTAACGATGATGATGATGAGT
GGGGCGTGCTAGAAACTGAGGATGATGATGATGACAGTGATGAAGTATCAGAGGAGGAAG
TGCAGACTAGGGCTACCAACAAGAGTAATAGATAGAACGAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8DPS9
Definition sp|Q8DPS9|DNLJ_STRR6 DNA ligase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Align length 45
Score (bit) 31.6
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950363|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_H08, 5'
         (645 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8DPS9|DNLJ_STRR6 DNA ligase OS=Streptococcus pneumoniae (str...    32   3.7  
sp|Q97QT2|DNLJ_STRPN DNA ligase OS=Streptococcus pneumoniae GN=l...    32   3.7  
sp|Q04KH2|DNLJ_STRP2 DNA ligase OS=Streptococcus pneumoniae sero...    32   3.7  

>sp|Q8DPS9|DNLJ_STRR6 DNA ligase OS=Streptococcus pneumoniae (strain
           ATCC BAA-255 / R6) GN=ligA PE=3 SV=1
          Length = 652

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 33  DRLSAEYMDEDEQGPVFRMGGIVHTELKPVEEENLSEEVLDLETN 167
           D ++ + + +D+   V++ G I+   L+ VE + +SEE LD+ TN
Sbjct: 350 DYIAEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTN 394


>sp|Q97QT2|DNLJ_STRPN DNA ligase OS=Streptococcus pneumoniae GN=ligA
           PE=3 SV=1
          Length = 652

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 33  DRLSAEYMDEDEQGPVFRMGGIVHTELKPVEEENLSEEVLDLETN 167
           D ++ + + +D+   V++ G I+   L+ VE + +SEE LD+ TN
Sbjct: 350 DYIAEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTN 394


>sp|Q04KH2|DNLJ_STRP2 DNA ligase OS=Streptococcus pneumoniae
           serotype 2 (strain D39 / NCTC 7466) GN=ligA PE=3 SV=1
          Length = 652

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 33  DRLSAEYMDEDEQGPVFRMGGIVHTELKPVEEENLSEEVLDLETN 167
           D ++ + + +D+   V++ G I+   L+ VE + +SEE LD+ TN
Sbjct: 350 DYIAEKDIRKDDTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTN 394
tr_hit_id O80572
Definition tr|O80572|O80572_ARATH Expressed protein (Putative uncharacterized protein At2g44020) OS=Arabidopsis thaliana
Align length 51
Score (bit) 48.9
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950363|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_H08, 5'
         (645 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O80572|O80572_ARATH Expressed protein (Putative uncharacteriz...    49   3e-04
tr|B7ZY02|B7ZY02_MAIZE Putative uncharacterized protein OS=Zea m...    47   0.001
tr|B6SWN0|B6SWN0_MAIZE mTERF family protein OS=Zea mays PE=2 SV=1      47   0.001
tr|A7PE85|A7PE85_VITVI Chromosome chr11 scaffold_13, whole genom...    45   0.003
tr|Q6K7E2|Q6K7E2_ORYSJ Os02g0783100 protein OS=Oryza sativa subs...    43   0.014
tr|A3AC08|A3AC08_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.014
tr|B5VLT8|B5VLT8_YEAS6 Putative uncharacterized protein OS=Sacch...    35   3.9  
tr|A6ZQA7|A6ZQA7_YEAS7 Putative uncharacterized protein OS=Sacch...    35   3.9  

>tr|O80572|O80572_ARATH Expressed protein (Putative uncharacterized
           protein At2g44020) OS=Arabidopsis thaliana GN=At2g44020
           PE=2 SV=1
          Length = 507

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
 Frame = +3

Query: 3   FLNCTDQRFKDRLSAEYMDEDEQGPVFRMGGIVHT---ELKPVEEENLSEE 146
           FLNC+DQRF++RL   ++D D +GP F MGG +     E+   EEE+ S++
Sbjct: 447 FLNCSDQRFEERLQGNFIDPDTEGPTFDMGGKLEMPGGEIVTDEEEDESDD 497


>tr|B7ZY02|B7ZY02_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 489

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   FLNCTDQRFKDRLSAEYMDEDEQGPVFRMGGIVH---TELKPVEEENLSEEVL 152
           FLNC+D RF+DR+  ++++ D  GP F MGG +    ++L   ++E+  +EVL
Sbjct: 430 FLNCSDMRFEDRMQGDFIEGDAPGPSFTMGGKLQMPGSQLVSDDDEDTDDEVL 482


>tr|B6SWN0|B6SWN0_MAIZE mTERF family protein OS=Zea mays PE=2 SV=1
          Length = 489

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   FLNCTDQRFKDRLSAEYMDEDEQGPVFRMGGIVH---TELKPVEEENLSEEVL 152
           FLNC+D RF+DR+  ++++ D  GP F MGG +    ++L   ++E+  +EVL
Sbjct: 430 FLNCSDMRFEDRMQGDFIEGDAPGPSFTMGGKLQMPGSQLVSDDDEDTDDEVL 482


>tr|A7PE85|A7PE85_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016568001
           PE=4 SV=1
          Length = 481

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   FLNCTDQRFKDRLSAEYMDEDEQGPVFRMGG---IVHTELKPVEEENLSEEVL 152
           FLNC+DQRF++RL A+Y++ +  GP F MGG   +   E+   EE+   +E L
Sbjct: 422 FLNCSDQRFEERLQADYIEMETIGPSFCMGGKLQLPGNEVVSDEEDESDDEEL 474


>tr|Q6K7E2|Q6K7E2_ORYSJ Os02g0783100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1311_D08.15 PE=2 SV=1
          Length = 485

 Score = 43.1 bits (100), Expect = 0.014
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +3

Query: 3   FLNCTDQRFKDRLSAEYMDEDEQGPVFRMGG 95
           FLNC+DQRF++R+  ++++ D  GP F MGG
Sbjct: 425 FLNCSDQRFEERMRGDFIEGDAPGPSFTMGG 455


>tr|A3AC08|A3AC08_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008330 PE=4 SV=1
          Length = 549

 Score = 43.1 bits (100), Expect = 0.014
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +3

Query: 3   FLNCTDQRFKDRLSAEYMDEDEQGPVFRMGG 95
           FLNC+DQRF++R+  ++++ D  GP F MGG
Sbjct: 400 FLNCSDQRFEERMRGDFIEGDAPGPSFTMGG 430


>tr|B5VLT8|B5VLT8_YEAS6 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain AWRI1631)
           GN=AWRI1631_103330 PE=4 SV=1
          Length = 240

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 33  DRLSAEYMDEDEQGPVFRMGG---IVHTELKPVEEENLS-EEVLDLET 164
           DRLS E MD  E+GP   +G    ++  E+    EE +S EEV+ LET
Sbjct: 185 DRLSVEEMDSSEEGPTKEVGSTDELIPLEVSTSMEEGISEEEVITLET 232


>tr|A6ZQA7|A6ZQA7_YEAS7 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_3068
           PE=4 SV=1
          Length = 240

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 33  DRLSAEYMDEDEQGPVFRMGG---IVHTELKPVEEENLS-EEVLDLET 164
           DRLS E MD  E+GP   +G    ++  E+    EE +S EEV+ LET
Sbjct: 185 DRLSVEEMDSSEEGPTKEVGSTDELIPLEVSTSMEEGISEEEVITLET 232