DK950376 |
Clone id |
TST38A01NGRL0008_H22 |
Library |
TST38 |
Length |
656 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_H22. 5' end sequence. |
Accession |
DK950376 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL3296Contig1 |
Sequence |
CACTCAGCGCTCTCCTTCACCCTCCTTCCCCTCCAACAGCTGTGTTTGCGTGTGTGCGCG CGCTCACTGAGGTAGAGAACCACGCATTTTAACTCTTCCTCACTCTCGCGTACACATACA CACACACACCCTCCCACACCCGTTCCCTTCCTGATCCTTCTCTTCTCAATCTCCTTCCCT TACAAACGCTCACCCACCTACACACACACACACACACACTTTCTCTCTTGCATTTTTCTC ACTCTTCATTCTCTCTCTCACTCACACACACATATACAGTATAGCAGCGAATTCAACAAT GGCCGAGGTCCTTACCTCCTCAGTTCCCCTCCCTGTGGTTCATACTCCTCCTTCTGCGGT TGTAGCGGACGCCCCGACCGAACACATCTTCCGATCCCCCCTTCCAGACATAGATGTCCC GGATCACCTCACTCTCCATGACTACATCTTCCAAAACGCGTCCCTCTATCCTGACAAGCC CTGCATCATCGAGCATTCCACAGGTAGAGAGATCTCCTATGCAGAGGTGGAGACGGCTTC CCGAAGAGTTGCCGCCGGTCTTGTGAATTTGGGCATCAAACAGGGGGATGTGGTCATGCT TTTGCTACCCAATTGCTATGAATTTGTGGTTCTTTTCCTGGGCATCTCCTTGCGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P41636 |
Definition |
sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda |
Align length |
92 |
Score (bit) |
114.0 |
E-value |
6.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7SBA8 |
Definition |
tr|B7SBA8|B7SBA8_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physcomitrella patens subsp. magdalenae |
Align length |
137 |
Score (bit) |
124.0 |
E-value |
5.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950376|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_H22, 5' (656 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7SBA8|B7SBA8_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physco... 124 5e-27 tr|Q3YAU2|Q3YAU2_EUCCA 4-coumarate:coenzyme A ligase OS=Eucalypt... 119 1e-25 tr|A8R7L9|A8R7L9_EUCGG 4-coumarate:coenzyme A ligase OS=Eucalypt... 117 5e-25 tr|Q94G18|Q94G18_POPJC 4-coumarate:CoA ligase 4 OS=Populus jacki... 117 8e-25 tr|A9PGE3|A9PGE3_POPTR Putative uncharacterized protein OS=Popul... 117 8e-25 tr|B7SBA7|B7SBA7_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physco... 116 1e-24 tr|B7SB99|B7SB99_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physco... 116 1e-24 tr|A9T8V9|A9T8V9_PHYPA Predicted protein OS=Physcomitrella paten... 116 1e-24 tr|Q8S564|Q8S564_SOYBN 4-coumarate:coenzyme A ligase OS=Glycine ... 115 2e-24 tr|B6E466|B6E466_LEUGL 4-coumarate CoA ligase 1 OS=Leucaena glau... 115 2e-24 tr|B7SBA5|B7SBA5_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physco... 115 2e-24 tr|B7SBA0|B7SBA0_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physco... 115 2e-24 tr|B7SBB0|B7SBB0_PHYPA 4-coumarate:coenzyme A ligase 4 OS=Physco... 115 3e-24 tr|B7SBA4|B7SBA4_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physco... 115 3e-24 tr|A9RP51|A9RP51_PHYPA Predicted protein OS=Physcomitrella paten... 115 3e-24 tr|B7SBA2|B7SBA2_PHYPA 4-coumarate:coenzyme A ligase 4 OS=Physco... 114 4e-24 tr|A9T5A3|A9T5A3_PHYPA Predicted protein OS=Physcomitrella paten... 114 4e-24 tr|B7SBA6|B7SBA6_PHYPA 4-coumarate:coenzyme A ligase 4 OS=Physco... 114 5e-24 tr|B8QN50|B8QN50_PINRA 4-coumarate-CoA ligase OS=Pinus radiata P... 114 7e-24 tr|B8LQR8|B8LQR8_PICSI Putative uncharacterized protein OS=Picea... 114 7e-24 tr|Q3ECI2|Q3ECI2_ARATH Uncharacterized protein At1g65060.2 OS=Ar... 113 9e-24 tr|O81140|O81140_POPTM 4-coumarate:CoA ligase OS=Populus tremulo... 113 9e-24 tr|Q9LL50|Q9LL50_RUBID 4-coumarate:coA ligase 2 OS=Rubus idaeus ... 113 1e-23 tr|B7SBA9|B7SBA9_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physco... 112 2e-23 tr|B7SBA1|B7SBA1_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physco... 112 2e-23 tr|Q42880|Q42880_LITER 4-coumarate:CoA ligase OS=Lithospermum er... 111 4e-23 tr|A7Q6G1|A7Q6G1_VITVI Chromosome chr11 scaffold_56, whole genom... 111 4e-23 tr|B7SBA3|B7SBA3_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physco... 110 6e-23 tr|B1GUX0|B1GUX0_ARALY 4-cumarate-COA-ligase (Fragment) OS=Arabi... 110 6e-23 tr|O48869|O48869_POPJC 4-coumarate:CoA ligase 1 OS=Populus jacki... 110 8e-23
>tr|B7SBA8|B7SBA8_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physcomitrella patens subsp. magdalenae GN=4CL2 PE=4 SV=1 Length = 583
Score = 124 bits (311), Expect = 5e-27 Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 11/137 (8%) Frame = +2
Query: 278 SIAANSTMAEVLTSSVPLPVVHTPPSAVVADAPTEH-----------IFRSPLPDIDVPD 424 S+ N AEV + +PL V P ++ ++PTE I+RS LPDID+P+ Sbjct: 18 SMMMNPAQAEVREARIPLTAVSEP---LLLESPTETEPAQYGQVQEVIYRSKLPDIDIPN 74
Query: 425 HLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLL 604 H+ L DY F+ A+ +P+K C+I+ +TGR+ +Y E+E + RRVAAGL +G+KQGDV+ LL Sbjct: 75 HMPLADYCFEKAAQWPEKVCLIDGNTGRKHTYGEIEVSMRRVAAGLAKIGVKQGDVIALL 134
Query: 605 LPNCYEFVVLFLGISLR 655 LPNC EFV +FLG + R Sbjct: 135 LPNCAEFVQVFLGAAKR 151
>tr|Q3YAU2|Q3YAU2_EUCCA 4-coumarate:coenzyme A ligase OS=Eucalyptus camaldulensis GN=4CL1 PE=2 SV=1 Length = 544
Score = 119 bits (299), Expect = 1e-25 Identities = 58/97 (59%), Positives = 72/97 (74%) Frame = +2
Query: 365 ADAPTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASR 544 ++ P E IFRS LPDI +PD+L+LH Y F+N S + D+PC+I +TGR +YAEVE SR Sbjct: 6 SEQPREFIFRSKLPDIYIPDNLSLHAYCFENISEFADRPCVINGATGRTYTYAEVELISR 65
Query: 545 RVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISLR 655 RV+AGL LG+ QGDV+MLLL NC EFV FLG S R Sbjct: 66 RVSAGLNGLGVGQGDVIMLLLQNCPEFVFAFLGASYR 102
>tr|A8R7L9|A8R7L9_EUCGG 4-coumarate:coenzyme A ligase OS=Eucalyptus globulus subsp. globulus GN=Egl4CL PE=3 SV=2 Length = 544
Score = 117 bits (294), Expect = 5e-25 Identities = 57/97 (58%), Positives = 72/97 (74%) Frame = +2
Query: 365 ADAPTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASR 544 ++ P E IFRS LPDI +PD+L+LH Y F+N S + D+PC+I +TG+ +YAEVE SR Sbjct: 6 SEQPREFIFRSKLPDIYIPDNLSLHAYCFENISEFADRPCVINGATGQTYTYAEVELISR 65
Query: 545 RVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISLR 655 RV+AGL LG+ QGDV+MLLL NC EFV FLG S R Sbjct: 66 RVSAGLNGLGVGQGDVIMLLLRNCPEFVFAFLGASYR 102
>tr|Q94G18|Q94G18_POPJC 4-coumarate:CoA ligase 4 OS=Populus jackii PE=2 SV=1 Length = 579
Score = 117 bits (292), Expect = 8e-25 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 1/119 (0%) Frame = +2
Query: 299 MAEVLTSSVPLPVVHTPPSAVVADA-PTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPD 475 M V T P P + P + + T+HIFRS LPDI + +HL LH Y F+N S + D Sbjct: 1 MMSVATVEPPKPELSPPQNQNAPSSHETDHIFRSKLPDITISNHLPLHAYCFENLSDFSD 60
Query: 476 KPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISL 652 +PC+I STG+ S+AE SR+VAAGL NLGIK+GDV+M LL NC EFV F+G S+ Sbjct: 61 RPCLISGSTGKTYSFAETHLISRKVAAGLSNLGIKKGDVIMTLLQNCPEFVFSFMGASM 119
>tr|A9PGE3|A9PGE3_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 570
Score = 117 bits (292), Expect = 8e-25 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 1/119 (0%) Frame = +2
Query: 299 MAEVLTSSVPLPVVHTPPSAVVADA-PTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPD 475 M V T P P + P + + T+HIFRS LPDI + +HL LH Y F+N S + D Sbjct: 1 MMSVATVEPPKPELSPPQNQNAPSSHETDHIFRSKLPDITISNHLPLHAYCFENLSDFSD 60
Query: 476 KPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISL 652 +PC+I STG+ S+AE SR+VAAGL NLGIK+GDV+M LL NC EFV F+G S+ Sbjct: 61 RPCLISGSTGKTYSFAETHLISRKVAAGLSNLGIKKGDVIMTLLQNCPEFVFSFMGASM 119
>tr|B7SBA7|B7SBA7_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physcomitrella patens subsp. magdalenae GN=4CL1 PE=4 SV=1 Length = 585
Score = 116 bits (291), Expect = 1e-24 Identities = 60/126 (47%), Positives = 82/126 (65%) Frame = +2
Query: 278 SIAANSTMAEVLTSSVPLPVVHTPPSAVVADAPTEHIFRSPLPDIDVPDHLTLHDYIFQN 457 S+A + L+ + + P A V D I+RS LPDID+P+H+ L DY + Sbjct: 32 SLAIGENLEPFLSETDAESQIMEPVHAEVHD----FIYRSKLPDIDIPNHMPLADYCLEK 87
Query: 458 ASLYPDKPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLF 637 +S +PDK C+I+ TGRE Y E+E +SRRVAAGL +G+KQGDV+ LLLPNC EFV++F Sbjct: 88 SSQWPDKVCLIDGVTGREHRYGEIELSSRRVAAGLDKIGVKQGDVIALLLPNCAEFVLVF 147
Query: 638 LGISLR 655 LG + R Sbjct: 148 LGAAKR 153
>tr|B7SB99|B7SB99_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physcomitrella patens subsp. patens GN=4CL1 PE=4 SV=1 Length = 585
Score = 116 bits (290), Expect = 1e-24 Identities = 53/92 (57%), Positives = 71/92 (77%) Frame = +2
Query: 380 EHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAG 559 + I+RS LPDID+P+H+ L DY + +S +PDK C+I+ TGRE Y E+E +SRRVAAG Sbjct: 62 DFIYRSKLPDIDIPNHMPLADYCLEKSSQWPDKVCLIDGVTGREHRYGEIELSSRRVAAG 121
Query: 560 LVNLGIKQGDVVMLLLPNCYEFVVLFLGISLR 655 L +G+KQGDV+ LLLPNC EFV++FLG + R Sbjct: 122 LDKIGVKQGDVIALLLPNCAEFVLVFLGAAKR 153
>tr|A9T8V9|A9T8V9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_89614 PE=3 SV=1 Length = 533
Score = 116 bits (290), Expect = 1e-24 Identities = 53/92 (57%), Positives = 71/92 (77%) Frame = +2
Query: 380 EHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAG 559 + I+RS LPDID+P+H+ L DY + +S +PDK C+I+ TGRE Y E+E +SRRVAAG Sbjct: 10 DFIYRSKLPDIDIPNHMPLADYCLEKSSQWPDKVCLIDGVTGREHRYGEIELSSRRVAAG 69
Query: 560 LVNLGIKQGDVVMLLLPNCYEFVVLFLGISLR 655 L +G+KQGDV+ LLLPNC EFV++FLG + R Sbjct: 70 LDKIGVKQGDVIALLLPNCAEFVLVFLGAAKR 101
>tr|Q8S564|Q8S564_SOYBN 4-coumarate:coenzyme A ligase OS=Glycine max GN=4CL1 PE=2 SV=1 Length = 546
Score = 115 bits (289), Expect = 2e-24 Identities = 52/98 (53%), Positives = 74/98 (75%) Frame = +2
Query: 362 VADAPTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETAS 541 +A +P E IFRSPLPDI +P HL L+ Y FQN S + D+PC+I+ TG ++YA+V+ A+ Sbjct: 1 MAPSPQEIIFRSPLPDIPIPTHLPLYSYCFQNLSQFHDRPCLIDGDTGETLTYADVDLAA 60
Query: 542 RRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISLR 655 RR+A+GL +GI+QGDV+ML+L NC +F + FLG + R Sbjct: 61 RRIASGLHKIGIRQGDVIMLVLRNCPQFALAFLGATHR 98
>tr|B6E466|B6E466_LEUGL 4-coumarate CoA ligase 1 OS=Leucaena glauca PE=2 SV=1 Length = 542
Score = 115 bits (289), Expect = 2e-24 Identities = 53/90 (58%), Positives = 68/90 (75%) Frame = +2
Query: 380 EHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAG 559 E IFRS LPDI +PDHL LH Y+F+N S D+PC+I+ TG ++YA+VE +RRVAAG Sbjct: 7 EFIFRSKLPDIYIPDHLPLHSYVFENLSQVKDRPCLIDGDTGETLTYADVELTARRVAAG 66
Query: 560 LVNLGIKQGDVVMLLLPNCYEFVVLFLGIS 649 L LGI+QGDV+ML+L NC +F + FLG S Sbjct: 67 LTKLGIQQGDVIMLVLRNCPQFALAFLGAS 96
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