DK950380
Clone id TST38A01NGRL0008_I02
Library
Length 633
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_I02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CAAGCATTTTCCATAGCTGGTAGAGCCCACCTTAAGGCTCTCTTCATGCCCGCAGCGTTA
TCGCCTTTAACGAGCAAAGGGTTCCACGTCTCTGCTGCCTATAGCTCCAATAGATACAAC
AACAATTACAACGACTACTACGATGACATAGTCGTGGATATGGACCCGGAAAAGATGCTC
AAACCAGGTGATCCCAACACTTTCCAAGCAACCATCCGCAAGGCAATGCCTGTGGGTTAC
TGGGTTACTATGCCAAGTGGGCGCGAGGCGTTCCTACCTGCCCAGGATCTAGGTTTTCTT
GGTGGCCTTGAAAAGCTCAGGTCTATCTTCCAGCCCGGACAAGAAGTGACTGTGCGAGTA
GTCACCCGCGGTGGCTCTGGTAGAGAGGTCCTTTCTTTGAAGAAACCTGACCCCAACAAA
CCTGACCCCCCACCCAAGCCCCTCAGGAAAGAGTTTGAAGGTGGCCGTCGGCGCCGCCCC
TCCAACTATTGATAATTTCTAAAGGTTAGAAATCAGTCCCCTGTCATGCTTCCCTGCCTA
ATGATGAAGCTTTCATGTGTGTTCCGGCTGTGTGATTGCTTGCCTTTTTATTGTAAAAGA
CATCGTTTGGCTATCTGGGACATTGTAAAGTTT
■■Homology search results ■■ -
sp_hit_id Q5RBP8
Definition sp|Q5RBP8|PROP_PONAB Properdin OS=Pongo abelii
Align length 56
Score (bit) 32.3
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950380|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_I02, 5'
(616 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5RBP8|PROP_PONAB Properdin OS=Pongo abelii GN=CFP PE=2 SV=1 32 2.0
sp|Q64181|PROP_CAVPO Properdin OS=Cavia porcellus GN=CFP PE=2 SV=1 31 5.8

>sp|Q5RBP8|PROP_PONAB Properdin OS=Pongo abelii GN=CFP PE=2 SV=1
Length = 469

Score = 32.3 bits (72), Expect = 2.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +3

Query: 147 HSRGYGPGKDAQTR*SQHFPSNHPQGNACGLLGYYAKWARGVPTCP--GSRFSWWP 308
HS + P + + S PS P G C L Y + G+P CP GS W P
Sbjct: 210 HSGTHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGSWGPWGP 265


>sp|Q64181|PROP_CAVPO Properdin OS=Cavia porcellus GN=CFP PE=2 SV=1
Length = 470

Score = 30.8 bits (68), Expect = 5.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3

Query: 162 GPGKDAQTR*---SQHFPSNHPQGNACGLLGYYAKWARGVPTCP 284
GP K +TR S PS +P GN C Y + G+P CP
Sbjct: 211 GPHKPVETRSRTCSAPEPSKNPPGNPCPGTAYEQQSCAGLPPCP 254


tr_hit_id A4VEE8
Definition tr|A4VEE8|A4VEE8_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 40
Score (bit) 34.7
E-value 4.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950380|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_I02, 5'
(616 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4VEE8|A4VEE8_TETTH Putative uncharacterized protein OS=Tetra... 35 4.6
tr|A1U751|A1U751_MARAV HAD-superfamily hydrolase, subfamily IA, ... 34 7.8
tr|Q9I5S3|Q9I5S3_PSEAE Putative uncharacterized protein OS=Pseud... 31 10.0
tr|A3LI80|A3LI80_PSEAE Putative uncharacterized protein OS=Pseud... 31 10.0

>tr|A4VEE8|A4VEE8_TETTH Putative uncharacterized protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00123689 PE=4
SV=1
Length = 239

Score = 34.7 bits (78), Expect = 4.6
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2

Query: 413 PTNLTPHPSPSGKSLKVAVGAAPPTIDNF*RLEISPLSCF 532
PT+ TP PSP S+ VA APP F R+ +SPLS F
Sbjct: 92 PTSQTPFPSPYNASV-VASKVAPPIFLIFLRVSLSPLSIF 130


>tr|A1U751|A1U751_MARAV HAD-superfamily hydrolase, subfamily IA,
variant 3 OS=Marinobacter aquaeolei (strain ATCC 700491
/ DSM 11845 / VT8) GN=Maqu_3751 PE=4 SV=1
Length = 229

Score = 33.9 bits (76), Expect = 7.8
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2

Query: 215 SARQCLWVTGLLCQVGARRSYLPRI*VFLVALKSSGLSS 331
S R L +TGL +VG R Y P + FL AL+ +GL S
Sbjct: 71 SERLALDITGLKAEVGDRIGYRPHVTDFLAALRQAGLRS 109


>tr|Q9I5S3|Q9I5S3_PSEAE Putative uncharacterized protein
OS=Pseudomonas aeruginosa GN=PA0643 PE=4 SV=1
Length = 363

Score = 31.2 bits (69), Expect(2) = 10.0
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3

Query: 332 WKIDLSFSRPPR---KPRSWAGRNASRPLG 252
W +SFSRPP P AG NASRP G
Sbjct: 299 WGFPVSFSRPPSVMVNPMRAAGNNASRPWG 328



Score = 21.6 bits (44), Expect(2) = 10.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1

Query: 430 GGQVCWGQVSSKKG 389
G Q+CWG ++ G
Sbjct: 264 GTQICWGNTTTNVG 277


>tr|A3LI80|A3LI80_PSEAE Putative uncharacterized protein
OS=Pseudomonas aeruginosa 2192 GN=PA2G_04546 PE=4 SV=1
Length = 363

Score = 31.2 bits (69), Expect(2) = 10.0
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3

Query: 332 WKIDLSFSRPPR---KPRSWAGRNASRPLG 252
W +SFSRPP P AG NASRP G
Sbjct: 299 WGFPVSFSRPPSVMVNPMRAAGNNASRPWG 328



Score = 21.6 bits (44), Expect(2) = 10.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1

Query: 430 GGQVCWGQVSSKKG 389
G Q+CWG ++ G
Sbjct: 264 GTQICWGNTTTNVG 277