DK950381
Clone id TST38A01NGRL0008_I03
Library
Length 632
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_I03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CAAAAAAGTTATGTAGTGCAAACAGATAGGGAGCACAGGGGATATGGAGGCGATGAAGGT
GCTAATCAGGAATGCGACTGTGCGGATGCCGTGCGCCCGATCTGTAGTGCATTGCTTGAG
CAGAAAAAGGAAGATCTCCGCCGCAAACTGGTGTTGCAGACACATCAAGTATAGGACACG
CTGCTGCTCTGCTTCCTTTCCTCTGGCTCAGAAAACAGAGGAGGCGCCCATAAATCTAGA
CGAAGGTAAGGGCGGCGCTGCTTCCATTGTTGGTAGTCTCTCACAATACCTTCTCAAGGG
TTGCACACCTGGGCATGAAGCCCCTTCTTGCCCTGACTATGTTGGCCCTGTTGAGGTTGC
TCGCACCTTCTATGGCCGCGGCCGTGGCCTCTTTGCAACACAAGATGTGCACGCAGGTAC
CCTTCTCCTCATCAGCAACCCCATGGCCATCTCCTACGATGATCCCCACCGCATCAGGCT
GCTCTCCAAACTGGTCACAATGGCAGCAAAAGACCCTCTTTTCCTCAGGAAAATGCACTC
TTTGGCTCACACCCAGAGCTCTCAACATCGGTTAGAGGTGCCCTCCATGGATTTTCTCAC
TTCAGATTCTTCAGATTACATGTATAGTGAGG
■■Homology search results ■■ -
sp_hit_id Q2LK54
Definition sp|Q2LK54|COL12_CHICK Collectin-12 OS=Gallus gallus
Align length 25
Score (bit) 33.1
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950381|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_I03, 5'
(632 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2LK54|COL12_CHICK Collectin-12 OS=Gallus gallus GN=COLEC12 P... 33 1.2
sp|Q9C0G0|ZN407_HUMAN Zinc finger protein 407 OS=Homo sapiens GN... 32 2.1
sp|Q5PQP0|IER5L_RAT Immediate early response gene 5-like protein... 32 2.7
sp|Q99J55|IER5L_MOUSE Immediate early response gene 5-like prote... 32 2.7
sp|Q5B778|CCR4_EMENI Glucose-repressible alcohol dehydrogenase t... 31 4.6
sp|O83433|GAL1_TREPA Putative galactokinase OS=Treponema pallidu... 31 6.1
sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-... 30 7.9
sp|P81204|NUC1_SYNRA Nuclease OS=Syncephalastrum racemosum PE=1 ... 30 7.9

>sp|Q2LK54|COL12_CHICK Collectin-12 OS=Gallus gallus GN=COLEC12 PE=2
SV=1
Length = 742

Score = 33.1 bits (74), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3

Query: 453 PTMIPTASGCSPNWSQWQQKTLFSS 527
PT +P A+GCSP+W + +K + S
Sbjct: 598 PTSVPEANGCSPHWKNYTEKCYYFS 622


>sp|Q9C0G0|ZN407_HUMAN Zinc finger protein 407 OS=Homo sapiens
GN=ZNF407 PE=2 SV=2
Length = 2248

Score = 32.3 bits (72), Expect = 2.1
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = -2

Query: 583 GHL*PMLRALGVSQRVHFPEEKRVFCCHCDQFGEQPDAVGIIVGDGHGVADEEKGTCVHI 404
GHL L H + K CCHC E A+ + + HG
Sbjct: 192 GHLFSSCSDLEKHAESHMQQPKEHTCCHCSHKAESSSALHMHIKQAHGPQKVFSCDLCGF 251

Query: 403 LCCKE-ATAAAIEGASNLNRANIVRARRGFM 314
C +E A G ++L R N+ AR GF+
Sbjct: 252 QCSEENLLNAHYLGKTHLRRQNLA-ARGGFV 281


>sp|Q5PQP0|IER5L_RAT Immediate early response gene 5-like protein
OS=Rattus norvegicus GN=Ier5l PE=2 SV=1
Length = 409

Score = 32.0 bits (71), Expect = 2.7
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = +2

Query: 23 QIGSTGDMEAMKVLIRNATVRMPCARSVVHCLSRKRKISAANWCCRHIKYRTRCCSASFP 202
Q+G GD EA R P AR +H L + ++ +H R C+A+ P
Sbjct: 95 QLGGGGDAEA----------REPVARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCTAAAP 144

Query: 203 LAQKTEEAPINLDEGKGGAASIVGSLSQYLLKGCT---PGHEAPSCPDYVGPVE 355
+A G A G+LS+ L GC P H AP ++ P++
Sbjct: 145 VAV------------AGAPAGCAGALSE--LPGCAALQPPHGAPHRGQHLEPLQ 184


>sp|Q99J55|IER5L_MOUSE Immediate early response gene 5-like protein
OS=Mus musculus GN=Ier5l PE=2 SV=1
Length = 406

Score = 32.0 bits (71), Expect = 2.7
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = +2

Query: 23 QIGSTGDMEAMKVLIRNATVRMPCARSVVHCLSRKRKISAANWCCRHIKYRTRCCSASFP 202
Q+G GD EA R P AR +H L + ++ +H R C+A+ P
Sbjct: 93 QLGGGGDAEA----------REPVARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCTAAAP 142

Query: 203 LAQKTEEAPINLDEGKGGAASIVGSLSQYLLKGCT---PGHEAPSCPDYVGPVE 355
+A G A G+LS+ L GC P H AP ++ P++
Sbjct: 143 VAV------------AGAPAGCAGALSE--LPGCAALQPPHGAPHRGQHLEPLQ 182


>sp|Q5B778|CCR4_EMENI Glucose-repressible alcohol dehydrogenase
transcriptional effector OS=Emericella nidulans GN=ccr4
PE=3 SV=1
Length = 675

Score = 31.2 bits (69), Expect = 4.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +1

Query: 418 YPSPHQQPHGHLLR*SPP----HQAALQTGHNGSKRPSFPQENALFGSHPEL 561
+P P QQPH H PP HQ +G S P F + G+H +
Sbjct: 34 HPHPAQQPHHHAHHNQPPQHVGHQHNFSSGALASATPHFTPSHIQNGTHTNI 85


>sp|O83433|GAL1_TREPA Putative galactokinase OS=Treponema pallidum
GN=TP_0418 PE=3 SV=1
Length = 397

Score = 30.8 bits (68), Expect = 6.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -2

Query: 520 KRVFCCHCDQFGEQPDAVGIIVGDGH 443
+RV CH +++G++P+A+ ++ G H
Sbjct: 15 QRVESCHTEEYGDEPEAIAVVPGRFH 40


>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis
thaliana GN=SPY PE=1 SV=1
Length = 914

Score = 30.4 bits (67), Expect = 7.9
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -2

Query: 370 EGASNLNRANIVRARRGFMPRCATLEKVL*ETTNNGSSAALTFV*IYGRLLCFLSQRKGS 191
+G L+ ANI+RAR F A E +L + + N + G+ +C +Q KG+
Sbjct: 42 QGNDTLSYANILRARNKFADALALYEAMLEKDSKNVEAH-------IGKGICLQTQNKGN 94

Query: 190 RAAAC 176
A C
Sbjct: 95 LAFDC 99


>sp|P81204|NUC1_SYNRA Nuclease OS=Syncephalastrum racemosum PE=1
SV=1
Length = 320

Score = 30.4 bits (67), Expect = 7.9
Identities = 22/87 (25%), Positives = 31/87 (35%)
Frame = +2

Query: 110 HCLSRKRKISAANWCCRHIKYRTRCCSASFPLAQKTEEAPINLDEGKGGAASIVGSLSQY 289
+ LS R+ A+W H+ SAS Q + N E L Y
Sbjct: 93 YILSYNRRDRLAHWVGEHLT------SASLQAGQGVDRDKSNFQEDTDIPEMFRAHLKDY 146

Query: 290 LLKGCTPGHEAPSCPDYVGPVEVARTF 370
+ G GH+AP+ D + TF
Sbjct: 147 VSSGYDRGHQAPAADDLSSQEAMDETF 173


tr_hit_id A9U604
Definition tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 85
Score (bit) 65.1
E-value 3.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950381|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_I03, 5'
(632 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella paten... 65 3e-09
tr|A9TID7|A9TID7_PHYPA Predicted protein OS=Physcomitrella paten... 63 1e-08
tr|B4F9T1|B4F9T1_MAIZE Putative uncharacterized protein OS=Zea m... 51 5e-05
tr|A8JCM2|A8JCM2_CHLRE Histone methyltransferase OS=Chlamydomona... 48 4e-04
tr|Q8S7V1|Q8S7V1_ORYSJ Os03g0168700 protein OS=Oryza sativa subs... 47 0.001
tr|A3AEJ0|A3AEJ0_ORYSJ Putative uncharacterized protein OS=Oryza... 47 0.001
tr|A2XCZ3|A2XCZ3_ORYSI Putative uncharacterized protein OS=Oryza... 47 0.001
tr|A9SV99|A9SV99_PHYPA Predicted protein OS=Physcomitrella paten... 46 0.002
tr|A8I6N2|A8I6N2_CHLRE Histone methyltransferase OS=Chlamydomona... 44 0.008
tr|A5BCK6|A5BCK6_VITVI Putative uncharacterized protein OS=Vitis... 42 0.023
tr|B7FQW4|B7FQW4_PHATR Predicted protein OS=Phaeodactylum tricor... 41 0.052
tr|A8I6N8|A8I6N8_CHLRE Predicted protein (Fragment) OS=Chlamydom... 41 0.052
tr|A7QUQ3|A7QUQ3_VITVI Chromosome chr10 scaffold_179, whole geno... 41 0.052
tr|A8I6N5|A8I6N5_CHLRE Predicted protein (Fragment) OS=Chlamydom... 41 0.068
tr|Q9LQX6|Q9LQX6_ARATH T24P13.14 OS=Arabidopsis thaliana PE=4 SV=1 39 0.20
tr|B2B113|B2B113_PODAN Predicted CDS Pa_3_8000 OS=Podospora anse... 39 0.20
tr|A8JBK7|A8JBK7_CHLRE Predicted protein OS=Chlamydomonas reinha... 39 0.26
tr|Q4WVN2|Q4WVN2_ASPFU TPR domain protein OS=Aspergillus fumigat... 39 0.26
tr|B0Y1P8|B0Y1P8_ASPFC TPR domain protein OS=Aspergillus fumigat... 39 0.26
tr|Q4PBR6|Q4PBR6_USTMA Putative uncharacterized protein OS=Ustil... 39 0.34
tr|Q6F2D2|Q6F2D2_SOLDE Putative TPR domain containing protein, i... 38 0.58
tr|Q60D23|Q60D23_SOLDE TPR domain containing protein, putative O... 38 0.58
tr|Q5NRN1|Q5NRN1_SOLDE TPR domain containing protein, putative O... 38 0.58
tr|A8PRY1|A8PRY1_MALGO Putative uncharacterized protein OS=Malas... 38 0.58
tr|A2QAM0|A2QAM0_ASPNC Similarity to phosphoprotein phosphatase ... 38 0.58
tr|A4S4E3|A4S4E3_OSTLU Predicted protein OS=Ostreococcus lucimar... 37 0.99
tr|Q00Z98|Q00Z98_OSTTA FOG: TPR repeat (ISS) OS=Ostreococcus tau... 37 1.3
tr|Q5AY01|Q5AY01_EMENI Putative uncharacterized protein OS=Emeri... 37 1.3
tr|Q0D4Q2|Q0D4Q2_ORYSJ Os07g0613600 protein OS=Oryza sativa subs... 36 2.2
tr|A8J8S0|A8J8S0_CHLRE Predicted protein OS=Chlamydomonas reinha... 36 2.2

>tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_173749 PE=4 SV=1
Length = 1117

Score = 65.1 bits (157), Expect = 3e-09
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2

Query: 278 LSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMA-IS 454
LS Y LKG G E+P C DY+GPV + GRGRGL T+DV AG LLL+SNP+A +
Sbjct: 719 LSHYYLKGKQAG-ESPFCADYIGPVIITDVGRGRGRGLVLTKDVEAGELLLVSNPIANLQ 777

Query: 455 YDDPHRIRLLSKLVTMAAKDPLFLR 529
H R +S+ + FL+
Sbjct: 778 LQVDHTRREISEAIVNGRVQEGFLK 802


>tr|A9TID7|A9TID7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170248 PE=4 SV=1
Length = 1301

Score = 63.2 bits (152), Expect = 1e-08
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +2

Query: 278 LSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMA 448
L+ Y LKG G E+P C DY+GPV + GRGRGL T+DV AG LLL+SNP+A
Sbjct: 795 LAHYYLKGRQAG-ESPFCADYIGPVIITDVGRGRGRGLVLTKDVEAGELLLVSNPIA 850


>tr|B4F9T1|B4F9T1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 544

Score = 51.2 bits (121), Expect = 5e-05
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Frame = +2

Query: 278 LSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAI-- 451
LS+++L G + + P +YVG VEV R+ +G GRG+FA ++V AGT L+I+ +AI
Sbjct: 149 LSEWVLAGFSG--KFPDLAEYVGCVEVRRSPHG-GRGVFAVKNVEAGTTLIIAKAVAIGR 205

Query: 452 ------SYDDPHRI---RLLSKLVTMAAKDPLFLRKMHSLAHTQSSQHRLEVPSMDFLTS 604
S D + K++ A K P +++L+ Q Q L VP M
Sbjct: 206 GVIPDASGSDEKMFVWKDFVGKVLEAAEKCPKTAALIYTLSTGQERQDELAVPDMAMFRK 265

Query: 605 DSSDYMYSE 631
++ D S+
Sbjct: 266 ETEDDSLSD 274


>tr|A8JCM2|A8JCM2_CHLRE Histone methyltransferase OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_178280 PE=4 SV=1
Length = 711

Score = 48.1 bits (113), Expect = 4e-04
Identities = 32/91 (35%), Positives = 46/91 (50%)
Frame = +2

Query: 248 KGGAASIVGSLSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLL 427
+G A S V + +Q A VGPV +A GRGRGL A++ V G LL
Sbjct: 125 RGSAPSAVAAAAQAAADALFTDPGAGPLAPQVGPVAIADLGDGRGRGLVASRTVQPGELL 184

Query: 428 LISNPMAISYDDPHRIRLLSKLVTMAAKDPL 520
L P+A+++DD L+ L + A+DP+
Sbjct: 185 LAVRPLALAWDDG-----LAALGSSLAQDPV 210


>tr|Q8S7V1|Q8S7V1_ORYSJ Os03g0168700 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0091P11.26 PE=4 SV=1
Length = 536

Score = 46.6 bits (109), Expect = 0.001
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Frame = +2

Query: 278 LSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAI-- 451
LS+++L G + + P ++VG VEV R+ +G GRG+FA +++ AG L+IS +AI
Sbjct: 144 LSEWVLAGFSG--KCPDLAEHVGAVEVRRSAHG-GRGVFAVKNIEAGANLVISKAVAIGR 200

Query: 452 -----SYDDPHRI----RLLSKLVTMAAKDPLFLRKMHSLAHTQSSQHRLEVPSMDFLTS 604
+ D ++ L+ K++ A K P +++L+ + + L +P M
Sbjct: 201 GVIPDAADSGEKMVVWKDLVDKVLDAAEKCPRTASLIYTLSTGEEPEDELPIPDMAHFKQ 260

Query: 605 DSSD 616
++ +
Sbjct: 261 ETEE 264


>tr|A3AEJ0|A3AEJ0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_009212 PE=4 SV=1
Length = 509

Score = 46.6 bits (109), Expect = 0.001
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Frame = +2

Query: 278 LSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAI-- 451
LS+++L G + + P ++VG VEV R+ +G GRG+FA +++ AG L+IS +AI
Sbjct: 117 LSEWVLAGFSG--KCPDLAEHVGAVEVRRSAHG-GRGVFAVKNIEAGANLVISKAVAIGR 173

Query: 452 -----SYDDPHRI----RLLSKLVTMAAKDPLFLRKMHSLAHTQSSQHRLEVPSMDFLTS 604
+ D ++ L+ K++ A K P +++L+ + + L +P M
Sbjct: 174 GVIPDAADSGEKMVVWKDLVDKVLDAAEKCPRTASLIYTLSTGEEPEDELPIPDMAHFKQ 233

Query: 605 DSSD 616
++ +
Sbjct: 234 ETEE 237


>tr|A2XCZ3|A2XCZ3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_10178 PE=4 SV=1
Length = 536

Score = 46.6 bits (109), Expect = 0.001
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Frame = +2

Query: 278 LSQYLLKGCTPGHEAPSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAI-- 451
LS+++L G + + P ++VG VEV R+ +G GRG+FA +++ AG L+IS +AI
Sbjct: 144 LSEWVLAGFSG--KCPDLAEHVGAVEVRRSAHG-GRGVFAVKNIEAGANLVISKAVAIGR 200

Query: 452 -----SYDDPHRI----RLLSKLVTMAAKDPLFLRKMHSLAHTQSSQHRLEVPSMDFLTS 604
+ D ++ L+ K++ A K P +++L+ + + L +P M
Sbjct: 201 GVIPDAADSGEKMVVWKDLVDKVLDAAEKCPRTASLIYTLSTGEEPEDELPIPDMAHFKQ 260

Query: 605 DSSD 616
++ +
Sbjct: 261 ETEE 264


>tr|A9SV99|A9SV99_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84447 PE=4 SV=1
Length = 691

Score = 45.8 bits (107), Expect = 0.002
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2

Query: 275 SLSQYLLKGCTPGHEAPSC-PDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAI 451
SL +Y L G G P D++G V++ R GRGRGL + +V AG +LLI NP+AI
Sbjct: 242 SLEEYCLSG---GRMLPPLVEDFIGSVKINRVGDGRGRGLVLSSNVAAGDVLLICNPIAI 298

Query: 452 S 454
+
Sbjct: 299 A 299


>tr|A8I6N2|A8I6N2_CHLRE Histone methyltransferase OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_142738 PE=4 SV=1
Length = 953

Score = 43.9 bits (102), Expect = 0.008
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +2

Query: 335 DYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAISY 457
D++GPV+VA GRGRGL+ T V AG LLL A+ Y
Sbjct: 431 DFIGPVQVADAGEGRGRGLYTTAPVRAGQLLLAMRADAVCY 471


>tr|A5BCK6|A5BCK6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025097 PE=4 SV=1
Length = 588

Score = 42.4 bits (98), Expect = 0.023
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Frame = +2

Query: 323 PSCPDYVGPVEVARTFYGRGRGLFATQDVHAGTLLLISNPMAI--------SYDDPHRIR 478
P +Y+G V++ ++ GRGLFAT++V AGTL+L++ +A + D I+
Sbjct: 227 PELAEYIGAVQIMKSEIS-GRGLFATKNVDAGTLVLVTKAIATERCILPEQNDDSADNIQ 285

Query: 479 L------LSKLVTMAAKDPLFLRKMHSLAHTQSS---QHRLEVPSMDFLTSDSSD 616
L + K+V A+K +++H L SS + LEVP ++ ++ +
Sbjct: 286 LVMWKNFIDKVVESASK----CKRLHHLISVLSSGEXEDVLEVPDVNLFRPETEE 336