DK950388 |
Clone id |
TST38A01NGRL0008_I10 |
Library |
TST38 |
Length |
596 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_I10. 5' end sequence. |
Accession |
DK950388 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
GGGAGTGTGTGCCATCCTCGAGAAATCGGATAAAAGTATTGAAAAAGGGGCATCCCGTTG GTCGTTCAGTGGATCTCTCTCAGTTTAGTGGGTATCCTGAGCTCATTTGTGCTCTGGAGA AGCTTTTTCATATGGAGGGAGCACTGACTGACTCCAACATGGGCTGGCAAATTACATACA CCGACAATGAGGGAGACATGATGCTGGTTGGAGATGATCCCTGGCATGAATTTGTCGATA TCGCTGGTAAGATATGCATCTTGACACAGGAGGAGTTGCAGGCTGTGTCATCAGGTGCTC TTGCTACATCTGCACACAGCCGATCGTGTGAGCAGAATGTGGCGAGCATGGATCAGTATC AAGATTCATCCTCACCCACCGCACTTTCTTTGAGAAATTCGACTGCTAATTACTAGGAAA GCGACGTGATTAATCATATTAACAAAAGGCGGTGACAGCTACAGGGAATTGCAGAAGGTC TGCCACTTTTTGATGAGATCGAGAGAGTTCAGAGTCGAGTCTGCAGAAGGCCCAAGGGGT CTTTGCTTGCAGCTTTTTATATAACCAAAAACATAACATGTCCAATCTCAGAAGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5JK20 |
Definition |
sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica |
Align length |
95 |
Score (bit) |
113.0 |
E-value |
6.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LRW7 |
Definition |
tr|B8LRW7|B8LRW7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
127 |
Score (bit) |
120.0 |
E-value |
8.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950388|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_I10, 5' (596 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LRW7|B8LRW7_PICSI Putative uncharacterized protein OS=Picea... 120 8e-26 tr|A7NZG6|A7NZG6_VITVI Chromosome chr6 scaffold_3, whole genome ... 114 3e-24 tr|B8A8I4|B8A8I4_ORYSI Putative uncharacterized protein OS=Oryza... 113 7e-24 tr|Q2LAI9|Q2LAI9_SOLLC Auxin response factor 4 OS=Solanum lycope... 113 9e-24 tr|Q6L8T9|Q6L8T9_CUCSA Auxin response factor 5 OS=Cucumis sativu... 112 2e-23 tr|Q2HSV9|Q2HSV9_MEDTR Transcriptional factor B3; Auxin response... 110 5e-23 tr|B8BPM5|B8BPM5_ORYSI Putative uncharacterized protein OS=Oryza... 108 2e-22 tr|B7ED01|B7ED01_ORYSJ cDNA clone:J013091D19, full insert sequen... 108 2e-22 tr|A3A153|A3A153_ORYSJ Putative uncharacterized protein OS=Oryza... 108 2e-22 tr|A3CHB0|A3CHB0_ORYSJ Putative uncharacterized protein OS=Oryza... 107 4e-22 tr|B4G204|B4G204_MAIZE Putative uncharacterized protein OS=Zea m... 107 7e-22 tr|B4G1Z3|B4G1Z3_MAIZE Putative uncharacterized protein OS=Zea m... 104 3e-21 tr|Q56YP4|Q56YP4_ARATH ARF1-binding protein OS=Arabidopsis thali... 103 1e-20 tr|Q56YL7|Q56YL7_ARATH ARF1-binding protein (ARF2) OS=Arabidopsi... 103 1e-20 tr|Q2LAJ3|Q2LAJ3_SOLLC Auxin response factor 2 OS=Solanum lycope... 102 2e-20 tr|A7QT66|A7QT66_VITVI Chromosome chr1 scaffold_166, whole genom... 102 2e-20 tr|Q56YR7|Q56YR7_ARATH ARF1-binding protein OS=Arabidopsis thali... 102 2e-20 tr|A7PHQ5|A7PHQ5_VITVI Chromosome chr17 scaffold_16, whole genom... 100 5e-20 tr|Q84QI6|Q84QI6_MANIN Auxin response factor-like protein OS=Man... 100 6e-20 tr|Q6KBS4|Q6KBS4_BRANA Putative auxin response factor OS=Brassic... 99 1e-19 tr|A7QWF2|A7QWF2_VITVI Chromosome undetermined scaffold_203, who... 99 1e-19 tr|Q56X14|Q56X14_ARATH Auxin response factor 9 (Fragment) OS=Ara... 98 4e-19 tr|Q2V3F5|Q2V3F5_ARATH Uncharacterized protein At4g23980.2 OS=Ar... 98 4e-19 tr|A7Q7T1|A7Q7T1_VITVI Chromosome chr18 scaffold_61, whole genom... 97 5e-19 tr|A5BG94|A5BG94_VITVI Putative uncharacterized protein OS=Vitis... 96 1e-18 tr|A7PU00|A7PU00_VITVI Chromosome chr7 scaffold_31, whole genome... 96 2e-18 tr|Q5IRX6|Q5IRX6_ARATH ARF11 OS=Arabidopsis thaliana GN=At2g4653... 92 2e-17 tr|Q3E6N4|Q3E6N4_ARATH Uncharacterized protein At2g46530.2 OS=Ar... 92 2e-17 tr|Q0WMQ7|Q0WMQ7_ARATH ARF1 family auxin responsive transcriptio... 92 2e-17 tr|A7QU71|A7QU71_VITVI Chromosome chr2 scaffold_176, whole genom... 92 3e-17
>tr|B8LRW7|B8LRW7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 920
Score = 120 bits (300), Expect = 8e-26 Identities = 67/127 (52%), Positives = 83/127 (65%), Gaps = 6/127 (4%) Frame = +3
Query: 15 SSRNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEG 194 S R+ KV K+G+ VGR+VDLS+ GY ELI LE LF+MEG L+ GW I YTDNEG Sbjct: 790 SGRSCTKVHKQGNAVGRAVDLSKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEG 849
Query: 195 DMMLVGDDPWHEFVDIAGKICILTQEELQAVSSGALATSAHS------RSCEQNVASMDQ 356 D+MLVGDDPW EF +I KI I TQEE+Q ++ G + A S + E + S+D Sbjct: 850 DIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSCFEQQPTTVEVSKCSIDG 909
Query: 357 YQDSSSP 377 QDSSSP Sbjct: 910 -QDSSSP 915
>tr|A7NZG6|A7NZG6_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024505001 PE=4 SV=1 Length = 798
Score = 114 bits (286), Expect = 3e-24 Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 10/140 (7%) Frame = +3
Query: 3 ECVPSSRNR-----IKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGW 167 E P+S+N KV K+G+ VGR++DLS+ +GY +L LE+LF MEG L D + GW Sbjct: 659 ETPPNSQNSGKRSCTKVHKQGNLVGRAIDLSRLNGYGDLFSELERLFGMEGLLRDPDKGW 718
Query: 168 QITYTDNEGDMMLVGDDPWHEFVDIAGKICILTQEELQAVSSGALATSAHSRSCEQNV-- 341 QI YTD+E DMM+VGDDPWHEF ++ KI I TQEE++ ++ G ++ S E V Sbjct: 719 QILYTDSENDMMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSCLEEAPVIL 778
Query: 342 ---ASMDQYQDSSSPTALSL 392 S Q SSPT + + Sbjct: 779 DVSKSSSVGQPDSSPTVIRI 798
>tr|B8A8I4|B8A8I4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05027 PE=4 SV=1 Length = 803
Score = 113 bits (283), Expect = 7e-24 Identities = 56/95 (58%), Positives = 68/95 (71%) Frame = +3
Query: 9 VPSSRNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDN 188 V S+R+ KV K+G +GRSVDLS+FS Y EL L+K+F +G L SN WQI YTDN Sbjct: 683 VASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDN 742
Query: 189 EGDMMLVGDDPWHEFVDIAGKICILTQEELQAVSS 293 EGDMMLVGDDPW EF I KI I T+EE+Q ++S Sbjct: 743 EGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNS 777
>tr|Q2LAI9|Q2LAI9_SOLLC Auxin response factor 4 OS=Solanum lycopersicum GN=ARF4 PE=2 SV=1 Length = 811
Score = 113 bits (282), Expect = 9e-24 Identities = 61/131 (46%), Positives = 87/131 (66%), Gaps = 7/131 (5%) Frame = +3
Query: 21 RNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEGDM 200 R+ KV K+G VGR++DLS+ +GY +L+ LE+LF+ME L D N GW+I YTD+E DM Sbjct: 683 RSCTKVHKQGSLVGRAIDLSRLNGYDDLLVELERLFNMEDLLRDPNKGWRILYTDSENDM 742
Query: 201 MLVGDDPWHEFVDIAGKICILTQEELQAVSSGALATSAHSRSC-EQNVASMDQYQDS--- 368 M+VGDDPWHEF ++ KI I TQEE++ ++ + S ++SC E+ A MD + S Sbjct: 743 MVVGDDPWHEFCEVVSKIHIYTQEEVEKMTIEGI--SDDTQSCLEEAPAIMDVSKSSSVG 800
Query: 369 ---SSPTALSL 392 SSPT + + Sbjct: 801 QPDSSPTVIRI 811
>tr|Q6L8T9|Q6L8T9_CUCSA Auxin response factor 5 OS=Cucumis sativus GN=CsARF5 PE=2 SV=1 Length = 733
Score = 112 bits (279), Expect = 2e-23 Identities = 57/127 (44%), Positives = 80/127 (62%), Gaps = 5/127 (3%) Frame = +3
Query: 21 RNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEGDM 200 R+ KV K+G VGR++DLS+ +GY +LI LE+LF MEG L D + GW++ YTDNE D+ Sbjct: 605 RSCTKVHKQGSLVGRAIDLSRLNGYTDLISELERLFSMEGLLKDPDKGWRVLYTDNENDV 664
Query: 201 MLVGDDPWHEFVDIAGKICILTQEELQAVSSGALATSAHS-----RSCEQNVASMDQYQD 365 M+VGD PWH+F D KI I TQEE++ +++G ++ S C + S Q Sbjct: 665 MVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQP 724
Query: 366 SSSPTAL 386 S PTA+ Sbjct: 725 DSPPTAV 731
>tr|Q2HSV9|Q2HSV9_MEDTR Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation OS=Medicago truncatula GN=MtrDRAFT_AC150891g17v2 PE=4 SV=1 Length = 810
Score = 110 bits (276), Expect = 5e-23 Identities = 57/120 (47%), Positives = 82/120 (68%), Gaps = 1/120 (0%) Frame = +3
Query: 15 SSRNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEG 194 + R+ KV K+G VGR++DLS+ S Y +L+ LE+LF MEG L D + GW+I YTD+E Sbjct: 680 AKRSCTKVHKQGSLVGRAIDLSRLSSYNDLVSELERLFGMEGLLRDPDKGWRILYTDSEN 739
Query: 195 DMMLVGDDPWHEFVDIAGKICILTQEELQAVSSGALATSAHSRSC-EQNVASMDQYQDSS 371 D+M+VGDDPWHEF D+ KI I TQEE++ ++ G + + ++SC EQ M+ + SS Sbjct: 740 DIMVVGDDPWHEFCDMVSKIHIYTQEEVEKMTIGMM--NDDNQSCLEQTPLIMEASKSSS 797
>tr|B8BPM5|B8BPM5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38317 PE=4 SV=1 Length = 840
Score = 108 bits (271), Expect = 2e-22 Identities = 55/105 (52%), Positives = 75/105 (71%), Gaps = 1/105 (0%) Frame = +3
Query: 15 SSRNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEG 194 SSR+ KV K+G +GRS+DL++F+ Y ELI L+++F G L S+ W + YTDNEG Sbjct: 710 SSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEG 769
Query: 195 DMMLVGDDPWHEFVDIAGKICILTQEELQAVSSGAL-ATSAHSRS 326 DMMLVGDDPW+EF ++ KI I T+EE+Q ++ GAL + S SRS Sbjct: 770 DMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDSRS 814
>tr|B7ED01|B7ED01_ORYSJ cDNA clone:J013091D19, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 840
Score = 108 bits (271), Expect = 2e-22 Identities = 55/105 (52%), Positives = 75/105 (71%), Gaps = 1/105 (0%) Frame = +3
Query: 15 SSRNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEG 194 SSR+ KV K+G +GRS+DL++F+ Y ELI L+++F G L S+ W + YTDNEG Sbjct: 710 SSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEG 769
Query: 195 DMMLVGDDPWHEFVDIAGKICILTQEELQAVSSGAL-ATSAHSRS 326 DMMLVGDDPW+EF ++ KI I T+EE+Q ++ GAL + S SRS Sbjct: 770 DMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDSRS 814
>tr|A3A153|A3A153_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_004525 PE=4 SV=1 Length = 845
Score = 108 bits (270), Expect = 2e-22 Identities = 58/114 (50%), Positives = 71/114 (62%), Gaps = 1/114 (0%) Frame = +3
Query: 36 VLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEGDMMLVGD 215 V K+G +GRSVDLS+FS Y EL L+K+F +G L SN WQI YTDNEGDMMLVGD Sbjct: 725 VHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGD 784
Query: 216 DPWHEFVDIAGKICILTQEELQAVSSGALA-TSAHSRSCEQNVASMDQYQDSSS 374 DPW EF I KI I T+EE+Q ++S + A S E+ D +D S Sbjct: 785 DPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKGSVKRDDTRDGGS 838
>tr|A3CHB0|A3CHB0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_034682 PE=4 SV=1 Length = 886
Score = 107 bits (268), Expect = 4e-22 Identities = 51/96 (53%), Positives = 70/96 (72%) Frame = +3
Query: 15 SSRNRIKVLKKGHPVGRSVDLSQFSGYPELICALEKLFHMEGALTDSNMGWQITYTDNEG 194 SSR+ KV K+G +GRS+DL++F+ Y ELI L+++F G L S+ W + YTDNEG Sbjct: 691 SSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEG 750
Query: 195 DMMLVGDDPWHEFVDIAGKICILTQEELQAVSSGAL 302 DMMLVGDDPW+EF ++ KI I T+EE+Q ++ GAL Sbjct: 751 DMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGAL 786
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