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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950394
Clone id TST38A01NGRL0008_I16
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_I16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CTCTCTCTCTCTCTCCGACGTTAAAACAATCTTCTTCTCCTCTCTCTCTCTCTCTCCCCC
CCCTATGGCCGCTTTCACTACCTCTTTAGAGAGGGTTTTTGGTCTCTCTCTAGAGATATG
AGATACCAAGATGAGAGATGCCTTGGCCTCTCATCTGTTGGAGATTCAGCAACAATCAGC
AAGGTTACACACCGGGAGACACCTAGAGACGATAACAATGTTCTTCCATCCTAAGATTGA
GTAGAGACAAGACCAGAGGAGGGATACAAGGCACATCATTAGCAAAGGTATATTGAGTGA
TTGAGAGGAGGTTGTCGCAAAGGATCATATTTATATTGACGAGGCATGGGAGATACCTTC
TGTAGACGCTCACCATGGAGGACATCGCAATGACCGATACAAGCCCTCTTTGGTTTTTGA
TACACATCCTCCATTATGTATCTGTTCTCTGAGATACACAACCACTTTTTGTATAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9J5S3
Definition sp|Q9J5S3|X_HBVOR Protein X OS=Orangutan hepatitis B virus (isolate Somad)
Align length 39
Score (bit) 29.6
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950394|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_I16, 5'
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9J5S3|X_HBVOR Protein X OS=Orangutan hepatitis B virus (isol...    30   7.1  
sp|Q0KEP4|FPG_RALEH Formamidopyrimidine-DNA glycosylase OS=Ralst...    29   9.3  

>sp|Q9J5S3|X_HBVOR Protein X OS=Orangutan hepatitis B virus (isolate
           Somad) GN=X PE=3 SV=1
          Length = 154

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 356 PSVDAHHGGHRNDRYKPSLVFDTHPPLCICSLRYTTTFC 472
           P+V A HG H + R  P   F +  P   C+LR+T+  C
Sbjct: 43  PAVPADHGAHLSLRGLPVCAFSSAGP---CALRFTSARC 78


>sp|Q0KEP4|FPG_RALEH Formamidopyrimidine-DNA glycosylase
           OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337) GN=mutM PE=3 SV=1
          Length = 292

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 300 IERRLSQRIIFILTRHGRYLL*TLTMEDIAMTDTSPL-WFLIHI 428
           +E RL+QR++  + R G+YLL    +E ++     P  W L+H+
Sbjct: 41  LEMRLAQRVVRRIERRGKYLL----LECVSEAAGEPAGWLLVHL 80
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950394|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_I16, 5'
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******