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NBDC - LSDB Archive
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DK950405
Clone id TST38A01NGRL0008_J03
Library
Length 601
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_J03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATG
GCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTC
TGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCC
GAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACT
TCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTG
GCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTG
AAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCC
TTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATG
CCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTTATGAGCTTTTGTGTCCCA
GCCACTTTGCATACATAATGAAACAACTTCCCAGTGGTGGCTTCACTGCTTAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 149
Score (bit) 182.0
E-value 1.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950405|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_J03, 5'
         (591 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   177   5e-44
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   177   5e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   176   6e-44
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   176   6e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   176   1e-43
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   175   1e-43
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   175   2e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   175   2e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   175   2e-43
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   174   2e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   174   4e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   174   4e-43
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   173   7e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   173   7e-43
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   173   7e-43
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   171   2e-42

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  182 bits (462), Expect = 1e-45
 Identities = 88/149 (59%), Positives = 108/149 (72%), Gaps = 5/149 (3%)
 Frame = +3

Query: 3   LKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 170
           LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK+VD
Sbjct: 31  LKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVD 90

Query: 171 FMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 347
           +++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ EC 
Sbjct: 91  YLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECK 150

Query: 348 KEYPEAFIRVLGFDAKRQVQVSGFLVQKP 434
           K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 151 KAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  181 bits (460), Expect = 2e-45
 Identities = 80/128 (62%), Positives = 97/128 (75%), Gaps = 1/128 (0%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 230
           SNG RV  M VW P   KK+ETLSYLPPLS E ++K++D+++R  W PC+EF+ + G VY
Sbjct: 50  SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109

Query: 231 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQV 410
           REH H  GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD  RQVQ 
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQC 169

Query: 411 SGFLVQKP 434
             F+V KP
Sbjct: 170 ISFIVAKP 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  181 bits (459), Expect = 2e-45
 Identities = 83/141 (58%), Positives = 101/141 (71%)
 Frame = +3

Query: 12  TTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGW 191
           T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD+++R GW
Sbjct: 38  TRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGW 94

Query: 192 TPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFI 371
            PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K YP+ F 
Sbjct: 95  IPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFN 154

Query: 372 RVLGFDAKRQVQVSGFLVQKP 434
           R++GFD  RQVQ   FL  KP
Sbjct: 155 RIIGFDNTRQVQCISFLTYKP 175


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  178 bits (451), Expect = 2e-44
 Identities = 80/128 (62%), Positives = 94/128 (73%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           SNG RVS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 413
           E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD KRQVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 414 GFLVQKPS 437
            F+  KP+
Sbjct: 170 SFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  178 bits (451), Expect = 2e-44
 Identities = 80/128 (62%), Positives = 94/128 (73%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           SNG RVS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 413
           E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD KRQVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 414 GFLVQKPS 437
            F+  KP+
Sbjct: 170 SFIAYKPT 177


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
          Length = 177

 Score =  178 bits (451), Expect = 2e-44
 Identities = 80/128 (62%), Positives = 94/128 (73%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           SNG RVS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 413
           E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD KRQVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 414 GFLVQKPS 437
            F+  KP+
Sbjct: 170 SFIAYKPT 177


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  177 bits (449), Expect = 3e-44
 Identities = 81/130 (62%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           +NGSRVS M VW+PY+N KFETLSYLPPLS + +AKQ+D++++ GW PCIEFD  G+V R
Sbjct: 51  TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTR 110

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEY-PEAFIRVLGFDAKRQVQV 410
           E     GYYDGRYW MWKLPMFGC D+A+VLREI EC K Y  + +IR LGFD  RQVQ 
Sbjct: 111 EGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQC 170

Query: 411 SGFLVQKPSV 440
           + F+V +P++
Sbjct: 171 ASFIVHQPTL 180


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  177 bits (448), Expect = 5e-44
 Identities = 78/127 (61%), Positives = 97/127 (76%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           SNGSRV  M VW PY NKKFETLSYLP L+ EQ+ K+V+++++  W PC+EF++ G + R
Sbjct: 60  SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKR 119

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 413
            + +  GYYDGRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD  RQVQ  
Sbjct: 120 VYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCI 179

Query: 414 GFLVQKP 434
            F+V KP
Sbjct: 180 SFIVHKP 186


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  177 bits (448), Expect = 5e-44
 Identities = 79/128 (61%), Positives = 94/128 (73%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           SNG +VS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 413
           E+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R++GFD KRQVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 414 GFLVQKPS 437
            F+  KP+
Sbjct: 170 SFIAYKPT 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  176 bits (447), Expect = 6e-44
 Identities = 77/127 (60%), Positives = 96/127 (75%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 233
           SNG RV  M VW P+ N KFETLSYLP L+ EQ+ K+V++++R  W PC+EFD  GS+ R
Sbjct: 44  SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISR 103

Query: 234 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVS 413
           ++    GYYDGRYWVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD  RQVQ  
Sbjct: 104 KYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCI 163

Query: 414 GFLVQKP 434
            F+V KP
Sbjct: 164 SFIVHKP 170
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 145
Score (bit) 276.0
E-value 6.0e-73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950405|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_J03, 5'
         (591 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   276   6e-73
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   196   1e-48
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   192   9e-48
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   182   9e-45
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   180   5e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   179   8e-44
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   179   8e-44
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...   177   3e-43
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   177   5e-43
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   177   5e-43
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   176   7e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   176   7e-43
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   176   9e-43
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   176   9e-43

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  276 bits (706), Expect = 6e-73
 Identities = 127/145 (87%), Positives = 138/145 (95%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAKQV++MVR
Sbjct: 29  LKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAKQVEYMVR 88

Query: 183 KGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPE 362
           KGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAECAKEYP 
Sbjct: 89  KGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAECAKEYPT 148

Query: 363 AFIRVLGFDAKRQVQVSGFLVQKPS 437
           AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 149 AFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  196 bits (497), Expect = 1e-48
 Identities = 91/148 (61%), Positives = 112/148 (75%), Gaps = 3/148 (2%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVDFM++
Sbjct: 32  LKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDFMIQ 91

Query: 183 KGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKE 353
           +   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI EC + 
Sbjct: 92  QNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQECKQS 151

Query: 354 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 437
           +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 FPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  192 bits (489), Expect = 9e-48
 Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 3/148 (2%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVDFM++
Sbjct: 32  LKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDFMIQ 91

Query: 183 KGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKE 353
           +   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI EC + 
Sbjct: 92  QNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQECKQS 151

Query: 354 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 437
           +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 FPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  191 bits (486), Expect = 2e-47
 Identities = 87/148 (58%), Positives = 111/148 (75%), Gaps = 3/148 (2%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVD+M++
Sbjct: 67  LKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQ 126

Query: 183 KGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKE 353
           +   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC  +
Sbjct: 127 QNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQ 186

Query: 354 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 437
           +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 187 FPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  191 bits (486), Expect = 2e-47
 Identities = 88/148 (59%), Positives = 109/148 (73%), Gaps = 3/148 (2%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QVD+M++
Sbjct: 37  LKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQVDYMIQ 96

Query: 183 KGWTPCIEFDKIGSVYREHFHGSG---YYDGRYWVMWKLPMFGCQDAAAVLREIAECAKE 353
           +   PCIEFD +G+V R +F GSG   YYDGRYW MWKLPMFGC D++ VLREI EC   
Sbjct: 97  QNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTS 156

Query: 354 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 437
           YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 157 YPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  191 bits (486), Expect = 2e-47
 Identities = 88/148 (59%), Positives = 110/148 (74%), Gaps = 3/148 (2%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQVD+M++
Sbjct: 37  LKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQ 96

Query: 183 KGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKE 353
           +   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC  +
Sbjct: 97  QNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQ 156

Query: 354 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 437
           +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 157 FPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  189 bits (479), Expect = 1e-46
 Identities = 85/148 (57%), Positives = 111/148 (75%), Gaps = 3/148 (2%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQVD+M++
Sbjct: 36  LKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQVDYMIQ 95

Query: 183 KGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKE 353
           +   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI EC  +
Sbjct: 96  QNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTQ 155

Query: 354 YPEAFIRVLGFDAKRQVQVSGFLVQKPS 437
           +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 156 FPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  184 bits (466), Expect = 4e-45
 Identities = 80/128 (62%), Positives = 98/128 (76%), Gaps = 1/128 (0%)
 Frame = +3

Query: 54  SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 230
           SNG RV  M VW P   KK+ETLSYLPPLS E ++K++D+++R  W PC+EF+ + G VY
Sbjct: 50  SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVY 109

Query: 231 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQV 410
           REH H  GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD+ RQVQ 
Sbjct: 110 REHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQC 169

Query: 411 SGFLVQKP 434
             F+V KP
Sbjct: 170 ISFIVSKP 177


>tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small
           chain OS=Populus trichocarpa PE=2 SV=1
          Length = 170

 Score =  182 bits (463), Expect = 9e-45
 Identities = 78/128 (60%), Positives = 97/128 (75%)
 Frame = +3

Query: 51  ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVY 230
           +SNGS+   M  W P +NKKFE LSYLPPLS + IAK++D+M++KGW PC+EFD++GSV 
Sbjct: 41  VSNGSKTFCMKTWNPINNKKFEALSYLPPLSEDSIAKEIDYMMKKGWIPCLEFDEVGSVR 100

Query: 231 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQV 410
           REH    GYYDGRYW +WKLPMFGC D++ VL EI EC K YP+A+IR L FD K Q Q 
Sbjct: 101 REHSRMPGYYDGRYWTLWKLPMFGCTDSSQVLEEIHECKKAYPDAYIRCLAFDNKHQGQC 160

Query: 411 SGFLVQKP 434
             F++QKP
Sbjct: 161 MAFVIQKP 168


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  182 bits (462), Expect = 1e-44
 Identities = 83/145 (57%), Positives = 104/145 (71%)
 Frame = +3

Query: 3   LKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVR 182
           LK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV++M++
Sbjct: 37  LKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQ 96

Query: 183 KGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPE 362
           +   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC K +P 
Sbjct: 97  QKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPG 156

Query: 363 AFIRVLGFDAKRQVQVSGFLVQKPS 437
            F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 157 CFVRVLGFDNVKQVQICGFLVARPN 181