DK950411 |
Clone id |
TST38A01NGRL0008_J09 |
Library |
TST38 |
Length |
649 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_J09. 5' end sequence. |
Accession |
DK950411 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
AGCACTGCAGCACCTCTGCTGACTATTCCTCCTGCCGATGAAGGCTCGAGAACTGGTTTA AAGGGCTCGAGTGTAGGTAGTCTACTCAATCGTGCAATGGCTGGTCCAGTTCTCTCTCTT GGTCAGTCAAAGTCATCGTCAAGGGGTGCTGGTTCTGAGTCTACTTATTTGGCAAGCCAG GAGACAACACCTATCACCCGGCAGCTGACTATTTTTTATGGCGGGCAGGCTCATGTTTTT GAAGATGTCTCTCTTGACAAGGCAGAAGCCATCATGGCGTTGGCTGGTTCGACTGGTCGT TCATGGTCAACAGTATATTCTCCACAACCAAAAGCTAGCCTGCCCATTTCCATTACTGAG GGCTCTTTGTCGACATACGACAGAGACAGGGTCAAGGCTGGAAGCAAGCCCAGTTCAGCA ACTTATGCCGACAATAATTCTGGTTTTTCAAATGAGGTTCGTAATGTTTTGAGTAGCTTG CTTCACAAGCATGGCCGGACAGGGGATACTCGTGCCCAGGAACAATCTAGTCAATTTGCT AAGTGGGCAACGGATATGCAAATAGTTGCAGATCATGTTGGAATGAAAGCCGAGGGCACA ACTCAAGTCTCCATCAGGGCTACCAACTCAGATAAGGAGCCTTTTGCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q84MB2 |
Definition |
sp|Q84MB2|TIF8_ARATH Protein TIFY 8 OS=Arabidopsis thaliana |
Align length |
101 |
Score (bit) |
77.0 |
E-value |
8.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LLX7 |
Definition |
tr|B8LLX7|B8LLX7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
141 |
Score (bit) |
112.0 |
E-value |
3.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950411|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_J09, 5' (649 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LLX7|B8LLX7_PICSI Putative uncharacterized protein OS=Picea... 112 3e-23 tr|A9TJF4|A9TJF4_PHYPA Predicted protein OS=Physcomitrella paten... 105 2e-21 tr|A9T6V3|A9T6V3_PHYPA Predicted protein OS=Physcomitrella paten... 103 7e-21 tr|A9NKC7|A9NKC7_PICSI Putative uncharacterized protein OS=Picea... 87 9e-16 tr|B8LL51|B8LL51_PICSI Putative uncharacterized protein OS=Picea... 54 6e-06 tr|A7P5M8|A7P5M8_VITVI Chromosome chr4 scaffold_6, whole genome ... 54 8e-06 tr|A9SKK6|A9SKK6_PHYPA Predicted protein OS=Physcomitrella paten... 51 5e-05 tr|A9U2L0|A9U2L0_PHYPA Predicted protein OS=Physcomitrella paten... 50 2e-04 tr|A9RL24|A9RL24_PHYPA Predicted protein OS=Physcomitrella paten... 50 2e-04 tr|A9SQ55|A9SQ55_PHYPA Predicted protein OS=Physcomitrella paten... 49 3e-04 tr|A9RL25|A9RL25_PHYPA Predicted protein OS=Physcomitrella paten... 48 5e-04 tr|B6TUW6|B6TUW6_MAIZE ZIM motif family protein OS=Zea mays PE=2... 48 6e-04 tr|B4G1J1|B4G1J1_MAIZE Putative uncharacterized protein OS=Zea m... 47 8e-04 tr|B6SNX5|B6SNX5_MAIZE Putative uncharacterized protein OS=Zea m... 47 0.001 tr|B6SLG4|B6SLG4_MAIZE PnFL-2 OS=Zea mays PE=2 SV=1 47 0.001 tr|A2YNP2|A2YNP2_ORYSI Putative uncharacterized protein OS=Oryza... 47 0.001 tr|B3H630|B3H630_ARATH Uncharacterized protein At1g48500.3 OS=Ar... 46 0.002 tr|B3H4G3|B3H4G3_ARATH Uncharacterized protein At1g48500.2 OS=Ar... 46 0.002 tr|B2XVS2|B2XVS2_SOLLC Jasmonate ZIM-domain protein 3 OS=Solanum... 46 0.002 tr|A8MSB0|A8MSB0_ARATH Uncharacterized protein At1g70700.1 OS=Ar... 46 0.002 tr|A7P3T6|A7P3T6_VITVI Chromosome chr1 scaffold_5, whole genome ... 46 0.002 tr|A5C491|A5C491_VITVI Putative uncharacterized protein OS=Vitis... 46 0.002 tr|Q3LHL5|Q3LHL5_SOLTU Putative uncharacterized protein PPS1 OS=... 45 0.003 tr|B4FQE1|B4FQE1_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.003 tr|B6T7Q6|B6T7Q6_MAIZE PnFL-2 OS=Zea mays PE=2 SV=1 45 0.004 tr|A8MR24|A8MR24_ARATH Uncharacterized protein At3g17860.2 OS=Ar... 45 0.004 tr|B6T6A9|B6T6A9_MAIZE PnFL-2 OS=Zea mays PE=2 SV=1 45 0.005 tr|B3Y562|B3Y562_TOBAC Jasmonate ZIM-domain protein 2 OS=Nicotia... 45 0.005 tr|A7PDT3|A7PDT3_VITVI Chromosome chr11 scaffold_13, whole genom... 45 0.005 tr|Q76B43|Q76B43_SOLTU Putative uncharacterized protein PPS3 OS=... 44 0.007
>tr|B8LLX7|B8LLX7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 406
Score = 112 bits (279), Expect = 3e-23 Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 10/141 (7%) Frame = +1
Query: 1 STAAP-LLTIPPADEGSRTGLKGSSVGSLLNRA--------MAGPVLSLXXXXXXXXXXX 153 +T P L++ PPADEGSRTGLKGSS+ +LLN A +G LS Sbjct: 197 NTVVPALVSQPPADEGSRTGLKGSSLANLLNNAPSATAARNTSGQSLSAGSSKFLPGNGV 256
Query: 154 XXXTYLASQE-TTPITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSPQP 330 + AS + +RQLTIFY GQAHVF+D++ KA+ I+ALAGS GRSWST YSP+P Sbjct: 257 QESSIQASPKGIASASRQLTIFYAGQAHVFDDINPTKADDILALAGSNGRSWSTTYSPRP 316
Query: 331 KASLPISITEGSLSTYDRDRV 393 +++L TEG++ + +R++V Sbjct: 317 RSTLQSLATEGNVLSVEREKV 337
>tr|A9TJF4|A9TJF4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170416 PE=4 SV=1 Length = 427
Score = 105 bits (262), Expect = 2e-21 Identities = 72/180 (40%), Positives = 91/180 (50%), Gaps = 16/180 (8%) Frame = +1
Query: 13 PLLTIPPADEGSRTGLKGSSVGSLLNRA-----------MAG-----PVLSLXXXXXXXX 144 P L P ADEGSRTGLK S + LL+ A AG P+ Sbjct: 251 PQLDRPAADEGSRTGLKNSVLAGLLDNAGLLHHDRSTPNPAGSSGCPPLAPQNQKTPNHN 310
Query: 145 XXXXXXTYLASQETTPITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSP 324 + Q T +RQLTIFYGGQAHVF+DV DKA+AI+ LAGS GRSWST YSP Sbjct: 311 GGSESMLPSSRQAPTTSSRQLTIFYGGQAHVFDDVPPDKADAILTLAGSNGRSWSTTYSP 370
Query: 325 QPKASLPISITEGSLSTYDRDRVKAGSKPSSATYADNNSGFSNEVRNVLSSLLHKHGRTG 504 +P A S++EGS+S +R+ K S + ++EV+ +L L TG Sbjct: 371 RPAAKPTNSMSEGSMSAVERE------KEHSVQSLGGSLTLTSEVQTLLRGLKQSGPLTG 424
>tr|A9T6V3|A9T6V3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168416 PE=4 SV=1 Length = 430
Score = 103 bits (258), Expect = 7e-21 Identities = 71/175 (40%), Positives = 89/175 (50%), Gaps = 16/175 (9%) Frame = +1
Query: 28 PPADEGSRTGLKGSSVGSLLNRA-----------MAG-----PVLSLXXXXXXXXXXXXX 159 P ADEGSRTGLK S + LL+ A AG P+ Sbjct: 259 PAADEGSRTGLKHSVLAGLLDNAGLLHHDRTAPYPAGSSGCPPLAPQHQKSQNQNGGSES 318
Query: 160 XTYLASQETTPITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSPQPKAS 339 L+ Q + +RQLTIFYGGQAHVF+DV DKA+AI+ LAGS GRSWST SP+P A Sbjct: 319 MIPLSRQAPSTSSRQLTIFYGGQAHVFDDVPPDKADAILTLAGSNGRSWSTTCSPRPAAK 378
Query: 340 LPISITEGSLSTYDRDRVKAGSKPSSATYADNNSGFSNEVRNVLSSLLHKHGRTG 504 S++EGS+S +R+ K S + S+EV+ VL L TG Sbjct: 379 PTTSMSEGSMSAIERE------KEHSVQSLGGSLTLSSEVQTVLRGLKQSGSLTG 427
>tr|A9NKC7|A9NKC7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 401
Score = 87.0 bits (214), Expect = 9e-16 Identities = 59/142 (41%), Positives = 77/142 (54%), Gaps = 12/142 (8%) Frame = +1
Query: 1 STAAPLLTIPPADEGSRTGLKGSSVGSLLNRAMAGPVLSLXXXXXXXXXXXXXXTYLA-- 174 ST L+ P ADEGSRTG++ + SL+ P + YL+ Sbjct: 254 STMMLPLSTPAADEGSRTGIQVPGLASLITNV---PSSTSDRSTSAAGVSTGGAKYLSRS 310
Query: 175 --SQETTPIT--------RQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSP 324 S+ T P + RQLTIFYGGQAHVF+DV KA+AIMALAGS GRSWST YSP Sbjct: 311 GGSEPTIPKSHQIAASPSRQLTIFYGGQAHVFDDVPPIKADAIMALAGSNGRSWSTTYSP 370
Query: 325 QPKASLPISITEGSLSTYDRDR 390 + + S +GS+ +R++ Sbjct: 371 RRRP----SECDGSIPALEREK 388
>tr|B8LL51|B8LL51_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 484
Score = 54.3 bits (129), Expect = 6e-06 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Frame = +1
Query: 169 LASQETTPITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWS--TVYSPQPKASL 342 +AS P QLTIFY G +V++DV DKA+AIM LAG+ G WS T P ++ Sbjct: 240 VASVSEKPAGAQLTIFYAGSVNVYDDVPADKAQAIMFLAGN-GNFWSGKTATPPSQSPAM 298
Query: 343 PISITEGSLSTYDRDRVKAGSKPSSATYADN 435 PIS+ + + + R G + S+A N Sbjct: 299 PISV---ATNGHARQATPIGPRLSNALSPTN 326
>tr|A7P5M8|A7P5M8_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032593001 PE=4 SV=1 Length = 337
Score = 53.9 bits (128), Expect = 8e-06 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 10/91 (10%) Frame = +1
Query: 19 LTIPPADEGSRTGLKGSSVGSLLNRAMAGPVLSLXXXXXXXXXXXXXX-TYLASQET--- 186 L+ P ADEGSRTG+KGS + S + +G V T++ E+ Sbjct: 246 LSQPAADEGSRTGIKGSGILSSITANASGSVSERNPSGLLPSGNRPKSRTHILEPESSTA 305
Query: 187 ------TPITRQLTIFYGGQAHVFEDVSLDK 261 T +RQ+TIFYGGQAHVF+DV +K Sbjct: 306 PSRLGSTSSSRQMTIFYGGQAHVFDDVHPNK 336
>tr|A9SKK6|A9SKK6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_80668 PE=4 SV=1 Length = 599
Score = 51.2 bits (121), Expect = 5e-05 Identities = 25/41 (60%), Positives = 31/41 (75%) Frame = +1
Query: 190 PITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWST 312 P T QLTIFY G +V++DV DKA+AIM LAGS G +WS+ Sbjct: 253 PRTAQLTIFYAGMVNVYDDVPFDKAQAIMLLAGS-GSTWSS 292
>tr|A9U2L0|A9U2L0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_173329 PE=4 SV=1 Length = 955
Score = 49.7 bits (117), Expect = 2e-04 Identities = 25/49 (51%), Positives = 33/49 (67%) Frame = +1
Query: 190 PITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSPQPKA 336 P T QLTIFY G +V++DV DKA+AI LAGS +WS+ + P+A Sbjct: 302 PRTAQLTIFYAGMVNVYDDVPFDKAQAITLLAGSR-NTWSSNFMNPPQA 349
>tr|A9RL24|A9RL24_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_67560 PE=4 SV=1 Length = 530
Score = 49.7 bits (117), Expect = 2e-04 Identities = 28/51 (54%), Positives = 35/51 (68%) Frame = +1
Query: 190 PITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSPQPKASL 342 P T QLTIFY G +VF+DV LDKA+AIM LAG T + S+ + P AS+ Sbjct: 263 PPTAQLTIFYAGMVNVFDDVPLDKAQAIMLLAG-TDSTCSSNHMNLPGASV 312
>tr|A9SQ55|A9SQ55_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166126 PE=4 SV=1 Length = 484
Score = 48.5 bits (114), Expect = 3e-04 Identities = 24/49 (48%), Positives = 33/49 (67%) Frame = +1
Query: 190 PITRQLTIFYGGQAHVFEDVSLDKAEAIMALAGSTGRSWSTVYSPQPKA 336 P T QLTIFY G ++++DV +DKA+AIM AGS +WS+ P+A Sbjct: 233 PRTAQLTIFYAGMVNLYDDVPVDKAQAIMLFAGSES-TWSSNLMDPPQA 280
|